DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 42750 wda auaGUAAAGUAUACGUUGCAUUUAUgu || ||| | | |: |||||| aaaCAAUUC-UUU---AUAUAAAUAau 3 25 107 129 [dm3:3R:19081087-19081109:-] 0.5586 126 0 -3.74 -0.1419 MIMAT0000388 dme-miR-303 42750 wda uggucaaaggacacuuUGGAUUu |||||| uaacauuuuacccaauACCUAAa 2 8 366 388 [dm3:3R:19080828-19080850:-] 0.3890 120 6 -10.59 -0.1250 MIMAT0005502 dme-miR-985 42750 wda acgggcUGGUAACCUUGUAAAc | :|| ||||||| uuuuuuAAUAUAUUAACAUUUu 2 17 353 374 [dm3:3R:19080842-19080863:-] 0.3890 144 7 -4.72 -0.9966 MIMAT0005521 dme-miR-1001 42750 wda acuaggAACCCUCAAAUGGGu || | ||||||| aauauaUUAACAUUUUACCCa 2 16 359 379 [dm3:3R:19080837-19080857:-] 0.3890 143 7 -10.06 -1.2615 MIMAT0011791 dme-miR-2283 42750 wda uaacagcauaaguacuAUAAAAg |||||| auguuugaaaauaauuUAUUUUg 2 8 51 73 [dm3:3R:19081143-19081165:-] 0.6483 120 6 -2.02 -0.3881 MIMAT0012199 dme-miR-2492 42750 wda aaacUUUCGAGAGCUGUUUUGua ||| | | :|||||| accuAAAAAUGU--GCAAAACua 3 20 382 402 [dm3:3R:19080814-19080834:-] 0.3956 124 0 -6.33 -0.1305 MIMAT0012200 dme-miR-2493* 42750 wda accGACACACACA-CACACUcg :||| | | |||||| uuaUUGUUACUAUCGUGUGAaa 3 19 88 109 [dm3:3R:19081107-19081128:-] 0.6483 125 0 -8.64 -0.2313 MIMAT0012531 dme-miR-10-3p 42750 wda uuuggaGAGAUCUUGGCUUAAAc | :| |||:||||||| gacgagCAUUCGAAUCGAAUUUc 2 18 314 336 [dm3:3R:19080880-19080902:-] 0.3890 161 7 -14.57 -0.7566 MIMAT0012531 dme-miR-10-3p 42750 wda uuuggagAGAUCUUGGCUUAAAc |: || |||||||| uugaaagUUCAG-CCCGAAUUUa 2 17 10 31 [dm3:3R:19081185-19081206:-] 0.6483 146 7 -11.78 -1.1601 MIMAT0000334 dme-miR-92a 42750 wda uauccGGCCCUGUUCACGUUac || | | |||||| caauaCCUAAAAAUGUGCAAaa 3 18 378 399 [dm3:3R:19080817-19080838:-] 0.3956 125 0 -8.56 -0.1317 MIMAT0000352 dme-miR-79 42750 wda uaCGAAACCAUUAG----AUCGAAAu | ||| |||| ||||||| uuGAUUUAACAAUCCUGGUAGCUUUc 2 21 134 159 [dm3:3R:19081057-19081082:-] 0.4516 147 7 -7.43 -0.3412 MIMAT0000352 dme-miR-79 42750 wda uacgaaaccaUUAGAUC-GAAAu |||:||| |||| guucagcccgAAUUUAGACUUUc 2 13 16 38 [dm3:3R:19081178-19081200:-] 0.6483 120 0 -7.46 -1.1184 MIMAT0000358 dme-miR-92b 42750 wda cguccggcccugauCACGUUaa |||||| caauaccuaaaaauGUGCAAaa 3 9 378 399 [dm3:3R:19080817-19080838:-] 0.3956 120 0 -8.56 -0.1317 MIMAT0000402 dme-miR-310 42750 wda uuuccGGCCCUUCACACGUUau || || ||||||| caauaCCUAAAAAUGUGCAAaa 3 18 378 399 [dm3:3R:19080817-19080838:-] 0.3956 133 0 -9.82 -0.1317 MIMAT0000403 dme-miR-311 42750 wda aguccggccacUUACACGUUau ||||||||| caauaccuaaaAAUGUGCAAaa 3 12 378 399 [dm3:3R:19080817-19080838:-] 0.3956 135 0 -12.63 -0.1330 MIMAT0000404 dme-miR-312 42750 wda aguccggcagagUUCACGUUau | |||||| caauaccuaaaaAUGUGCAAaa 3 11 378 399 [dm3:3R:19080817-19080838:-] 0.3956 122 0 -8.56 -0.1317 MIMAT0000405 dme-miR-313 42750 wda agcccgacACUUUU-CACGUUau | |||| |||||| ccaauaccUAAAAAUGUGCAAaa 3 15 377 399 [dm3:3R:19080817-19080839:-] 0.3956 133 0 -7.20 -0.1317 MIMAT0005504 dme-miR-987 42750 wda guaguuaggUCUGAUAAAUGAAAu | |: |||||:||| uauguuugaAAAUAAUUUAUUUUg 2 16 50 73 [dm3:3R:19081143-19081166:-] 0.6483 139 0 -6.52 -0.1089 MIMAT0005019 dme-miR-1006 42750 wda gauaCUUAUUCUUUAGCUUAAAu | || | |||||||||| acgaGCAUUCG-AAUCGAAUUUc 2 20 315 336 [dm3:3R:19080880-19080901:-] 0.3890 157 7 -11.89 -0.7566 MIMAT0005019 dme-miR-1006 42750 wda gauACUUAU-UCUUUAGCUUAAAu |||| : |: ||||||| gguUGAAAGUUCAGCCCGAAUUUa 2 21 8 31 [dm3:3R:19081185-19081208:-] 0.6483 143 7 -13.21 -1.1582 MIMAT0005027 dme-miR-1014 42750 wda gacguuuacuuuuaCUUAAAa |||||| ugaaaguucagcccGAAUUUa 2 8 11 31 [dm3:3R:19081185-19081205:-] 0.6483 120 6 -5.01 -0.1407

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score wda RAID00311526 dme-miR-985-3p miRNA MIMAT0005502 wda mRNA 42750 Prediction 0.1828 wda RAID00447781 dme-miR-10-3p miRNA MIMAT0012531 wda mRNA 42750 Prediction 0.1828 wda RAID00834995 dme-miR-313-3p miRNA MIMAT0000405 wda mRNA 42750 Prediction 0.1828 wda RAID01302270 dme-miR-312-3p miRNA MIMAT0000404 wda mRNA 42750 Prediction 0.1828 wda RAID01706111 dme-miR-311-3p miRNA MIMAT0000403 wda mRNA 42750 Prediction 0.1828 wda RAID02011959 dme-miR-981-3p miRNA MIMAT0005497 wda mRNA 42750 Prediction 0.1828 wda RAID02106710 dme-miR-92a-3p miRNA MIMAT0000334 wda mRNA 42750 Prediction 0.1828 wda RAID02110422 dme-miR-310-3p miRNA MIMAT0000402 wda mRNA 42750 Prediction 0.1828 wda RAID02999799 dme-miR-1006-3p miRNA MIMAT0005019 wda mRNA 42750 Prediction 0.2202 wda RAID03013390 dme-miR-1014-3p miRNA MIMAT0005027 wda mRNA 42750 Prediction 0.2202 wda RAID03179977 dme-miR-92b-3p miRNA MIMAT0000358 wda mRNA 42750 Prediction 0.1828 wda RAID03370741 dme-miR-79-3p miRNA MIMAT0000352 wda mRNA 42750 Prediction 0.2202 wda RAID03537820 dme-miR-987-5p miRNA MIMAT0005504 wda mRNA 42750 Prediction 0.1828 wda RAID03580564 dme-miR-1001-5p miRNA MIMAT0005521 wda mRNA 42750 Prediction 0.1828