DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43476 Trc8 auAGUAAAGUAUACGUUGCAUUU-AUGu |::|||::| | : |: |||| ||| ccUUGUUUUGU-UUUUAUUUAAAUUACc 2 26 710 736 [dm3:3R:25324628-25324654:-] 0.5584 127 0 -3.74 -1.2517 MIMAT0000344 dme-miR-281-1* 43476 Trc8 ugACA--GCUGCCUGUCG-AGAGAa ||| |||| | :|| ||||| uuUGUAGCGACCCAAGGCUUCUCUa 2 21 136 160 [dm3:3R:25325204-25325228:-] 0.5199 123 0 -16.45 -0.5508 MIMAT0000344 dme-miR-281-1* 43476 Trc8 ugACA--GCUGCCUGUCG-AGAGAa ||| |||| | :|| ||||| uuUGUAGCGACCCAAGGCUUCUCUa 2 21 136 160 [dm3:3R:25325204-25325228:-] 0.5199 123 0 -16.45 -0.4804 MIMAT0005465 dme-miR-954 43476 Trc8 uguguguuGCGUUGUG-GGUCu ||:||||| |||| aaucuauuCGUAACACACCAGc 2 14 180 201 [dm3:3R:25325163-25325184:-] 0.5199 125 0 -19.66 -0.4182 MIMAT0005465 dme-miR-954 43476 Trc8 uguguguuGCGUUGUG-GGUCu ||:||||| |||| aaucuauuCGUAACACACCAGc 2 14 180 201 [dm3:3R:25325163-25325184:-] 0.5199 125 0 -19.66 -0.3573 MIMAT0005500 dme-miR-984 43476 Trc8 uuUAAGGUUGGCAUAAAUGGAgu :||:: |:: | |||||| uuGUUUUUAUUUAAAUUACCUau 3 22 717 739 [dm3:3R:25324625-25324647:-] 0.5584 133 0 -6.13 -0.1397 MIMAT0005502 dme-miR-985 43476 Trc8 acgggcUGGUAACCUUGUAAAc || || ||||||| gcaaaaACGAU--AAACAUUUu 2 17 510 529 [dm3:3R:25324835-25324854:-] 0.5584 141 7 -7.59 -1.0519 MIMAT0005502 dme-miR-985 43476 Trc8 acgggcugguaaccUUGUAAac |||||| cggaaaauacagaaAACAUUaa 3 9 779 800 [dm3:3R:25324564-25324585:-] 0.5776 120 0 -5.29 -0.1354 MIMAT0005517 dme-miR-997 43476 Trc8 acUUUGA-GGAAGCUCAAACcc |||:| | |: |||||| uuAAAUUAGCAUUAAGUUUGca 3 20 389 410 [dm3:3R:25324898-25324919:-] 0.5584 134 0 -8.63 -0.1628 MIMAT0005517 dme-miR-997 43476 Trc8 acUUUGA-GGAAGCUCAAACcc |||:| | |: |||||| uuAAAUUAGCAUUAAGUUUGca 3 20 445 466 [dm3:3R:25324898-25324919:-] 0.5584 134 0 -8.63 -0.1306 MIMAT0011784 dme-miR-2279* 43476 Trc8 uuaaaGUGUGUGUCUAUAAAUu :|:::||: |||||| uuaccUAUGUACGUUUAUUUAg 2 18 732 753 [dm3:3R:25324611-25324632:-] 0.5680 125 6 -10.72 -0.1281 MIMAT0011784 dme-miR-2279* 43476 Trc8 uuaaagugugugucuAUAAAUu |||||| uccuuguuuuguuuuUAUUUAa 2 8 709 730 [dm3:3R:25324634-25324655:-] 0.5584 120 6 -1.97 -0.2605 MIMAT0011787 dme-miR-2280* 43476 Trc8 agucaaUCGAACCUUCAUUUAa ||:| |||||||| uaaucaAGUUACCAAGUAAAUc 2 17 554 575 [dm3:3R:25324789-25324810:-] 0.5584 152 7 -8.51 -0.9231 MIMAT0012199 dme-miR-2492 43476 Trc8 aaACUUUCGA-GAG-CUGUUUUGUa ||||| | | | |||||| | guUGAAACAUACACACACAAAAAAa 2 22 361 385 [dm3:3R:25324923-25324947:-] 0.6443 123 0 -5.84 -0.2269 MIMAT0012199 dme-miR-2492 43476 Trc8 aaacuuUCGAGAGCUGUUUUGUa ||:| |||||||| aaaucuAGUUAAAAACAAAACAc 2 18 571 593 [dm3:3R:25324771-25324793:-] 0.5584 149 7 -10.30 -0.9861 MIMAT0012199 dme-miR-2492 43476 Trc8 aaACUUUCGA-GAG-CUGUUUUGUa ||||| | | | |||||| | guUGAAACAUACACACACAAAAAAa 2 22 417 441 [dm3:3R:25324923-25324947:-] 0.6443 123 0 -5.84 -0.1848 MIMAT0012199 dme-miR-2492 43476 Trc8 aaacuuucgagagcugUUUUGUa |||||| gaagcggaaaauacagAAAACAu 2 8 775 797 [dm3:3R:25324567-25324589:-] 0.5776 120 6 -8.08 -0.2026 MIMAT0012201 dme-miR-2493 43476 Trc8 ugcggAGCGUGUUUAUGUGUGcc |:| | | |||||||| aaaugUUG-AAACAUACACACac 3 19 357 378 [dm3:3R:25324930-25324951:-] 0.6443 136 0 -14.87 -0.4063 MIMAT0012201 dme-miR-2493 43476 Trc8 ugcggAGCGUGUUUAUGUGUGcc |:| | | |||||||| aaaugUUG-AAACAUACACACac 3 19 413 434 [dm3:3R:25324930-25324951:-] 0.6443 136 0 -14.87 -0.3409 MIMAT0012206 dme-miR-2496* 43476 Trc8 augcuaccggaGAGUGUGUGCGUg | :|||||| || aaauguugaaaCAUACACACACAa 2 14 357 380 [dm3:3R:25324928-25324951:-] 0.6443 121 0 -15.80 -0.1051 MIMAT0012208 dme-miR-2497* 43476 Trc8 uuGUUGAUGUAAAACGUUACGAAUg :|||| || || ||||||| uaUAACU-CACGCAGCUAUGCUUAa 2 24 276 299 [dm3:3R:25325065-25325088:-] 0.5199 157 7 -16.38 -0.9773 MIMAT0012209 dme-miR-2497 43476 Trc8 gacguuuguaacaUUUACAACa |||||||| aaagucgauucaaAAAUGUUGa 2 10 344 365 [dm3:3R:25324943-25324964:-] 0.7301 145 7 -8.35 -1.3314 MIMAT0012209 dme-miR-2497 43476 Trc8 gacguuuguaacaUUUACAACa |||||||| aaagucgauucaaAAAUGUUGa 2 10 400 421 [dm3:3R:25324943-25324964:-] 0.7301 145 7 -8.35 -1.3218 MIMAT0000319 dme-miR-263a 43476 Trc8 cacuuaagaaggucacgGUAAUUg |||||| aaaaaaaauuaaauuagCAUUAAg 2 8 381 404 [dm3:3R:25324904-25324927:-] 0.5584 120 6 -5.54 -0.2399 MIMAT0000319 dme-miR-263a 43476 Trc8 cacuuaagaaggucacgGUAAUUg |||||| aaaaaaaauuaaauuagCAUUAAg 2 8 437 460 [dm3:3R:25324904-25324927:-] 0.5584 120 6 -5.54 -0.1967 MIMAT0000319 dme-miR-263a 43476 Trc8 cacuuaagaaggucacgGUAAUUg |||||| gcggaaaauacagaaaaCAUUAAa 2 8 778 801 [dm3:3R:25324563-25324586:-] 0.5776 120 6 -8.87 -0.5598 MIMAT0000332 dme-miR-274 43476 Trc8 uaaugggcaaucacagccaGUGUUUu |||||| aaauguugaaacauacacaCACAAAa 2 8 357 382 [dm3:3R:25324926-25324951:-] 0.6443 120 6 -13.97 -0.5007 MIMAT0000332 dme-miR-274 43476 Trc8 uaaugggcaaucacagccaGUGUUUu |||||| aaauguugaaacauacacaCACAAAa 2 8 413 438 [dm3:3R:25324926-25324951:-] 0.6443 120 6 -13.97 -0.4268 MIMAT0000341 dme-miR-279 43476 Trc8 aauuacucaCACCUAGAUCAGu || |||||||: aguuaccaaGUAAAUCUAGUUa 2 14 560 581 [dm3:3R:25324783-25324804:-] 0.5584 133 0 -11.76 -0.2119 MIMAT0000349 dme-miR-281-2* 43476 Trc8 ugACA--GCUGCCUAUCG-AGAGAa ||| |||| | :|| ||||| uuUGUAGCGACCCAAGGCUUCUCUa 2 21 136 160 [dm3:3R:25325204-25325228:-] 0.5199 123 0 -15.35 -0.5508 MIMAT0000349 dme-miR-281-2* 43476 Trc8 ugACA--GCUGCCUAUCG-AGAGAa ||| |||| | :|| ||||| uuUGUAGCGACCCAAGGCUUCUCUa 2 21 136 160 [dm3:3R:25325204-25325228:-] 0.5199 123 0 -15.35 -0.4804 MIMAT0000355 dme-miR-210 43476 Trc8 aucgGCGAC--AGUGUGCGUGUu :|:|| ||:|| |||| aaaaUGUUGAAACAUACACACAc 2 18 356 378 [dm3:3R:25324930-25324952:-] 0.6443 120 0 -15.43 -0.1615 MIMAT0000355 dme-miR-210 43476 Trc8 aucgGCGAC--AGUGUGCGUGUu :|:|| ||:|| |||| aaaaUGUUGAAACAUACACACAc 2 18 412 434 [dm3:3R:25324930-25324952:-] 0.6443 120 0 -15.43 -0.1302 MIMAT0000359 dme-miR-286 43476 Trc8 ucgugcucacaagccAGAUCAGu ||||||: aaguuaccaaguaaaUCUAGUUa 2 9 559 581 [dm3:3R:25324783-25324805:-] 0.5584 124 0 -11.66 -0.2139 MIMAT0000407 dme-miR-315 43476 Trc8 cgaaagACUC-GUUGUU-AGUUUu |||| |:|:|| ||||| cggcaaUGAGACGAUAAUUCAAAc 2 17 283 306 [dm3:3R:25325002-25325025:-] 0.5199 127 0 -13.38 -0.4906 MIMAT0000407 dme-miR-315 43476 Trc8 cgaaagACUC-GUUGUU-AGUUUu |||| |:|:|| ||||| cggcaaUGAGACGAUAAUUCAAAc 2 17 339 362 [dm3:3R:25325002-25325025:-] 0.5199 127 0 -13.38 -0.4125 MIMAT0000408 dme-miR-316 43476 Trc8 gcggUCAUUCGCC-UUUUUCUGu ||| :|| |||||| | guuaAGUUUAUGGUAAAAAGUCg 2 19 328 350 [dm3:3R:25324958-25324980:-] 0.7301 121 0 -11.73 -0.1247 MIMAT0000413 dme-miR-iab-4-3p 43476 Trc8 caAUGCAUAUGACUU-CCAUAUGGc |:| || ||| || |||||| uaUGCUUA-ACUAAAUUAUAUACCa 2 23 291 314 [dm3:3R:25325050-25325073:-] 0.5199 127 6 -7.52 -0.1229 MIMAT0005486 dme-miR-970 43476 Trc8 uaucgGCGCA--CACA-GAAUACu :|||| |||| |||||| uucugUGCGUUAGUGUACUUAUGu 2 17 99 122 [dm3:3R:25325242-25325265:-] 0.5199 127 6 -18.90 -0.6284 MIMAT0005486 dme-miR-970 43476 Trc8 uaucgGCGCA--CACA-GAAUACu :|||| |||| |||||| uucugUGCGUUAGUGUACUUAUGu 2 17 99 122 [dm3:3R:25325242-25325265:-] 0.5199 127 6 -18.90 -0.5548 MIMAT0005515 dme-miR-996 43476 Trc8 ucugcUCGUAC-UUUAGAUCAGu | || | |||||||||: aaguuACCAAGUAAAUCUAGUUa 2 18 559 581 [dm3:3R:25324783-25324805:-] 0.5584 144 0 -12.97 -0.2119 MIMAT0005516 dme-miR-252 43476 Trc8 gaGGACGCCGUGAU--CAUGAAUc :|||: ||::|| ||||||| guUCUGU-GCGUUAGUGUACUUAu 2 21 98 120 [dm3:3R:25325244-25325266:-] 0.5199 157 7 -19.39 -0.4653 MIMAT0005516 dme-miR-252 43476 Trc8 gaGGACGCCGUGAU--CAUGAAUc :|||: ||::|| ||||||| guUCUGU-GCGUUAGUGUACUUAu 2 21 98 120 [dm3:3R:25325244-25325266:-] 0.5199 157 7 -19.39 -0.4004 MIMAT0005519 dme-miR-999 43476 Trc8 ucUGUGUCA-GAAUGUCAAUUgu || ||| | :|||||| uuACCAAGUAAAUCUAGUUAAaa 3 21 562 584 [dm3:3R:25324780-25324802:-] 0.5584 127 0 -8.75 -0.1367

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trc8 RAID00109731 dme-miR-210-3p miRNA MIMAT0000355 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID00184193 dme-miR-999-3p miRNA MIMAT0005519 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID00677984 dme-miR-315-5p miRNA MIMAT0000407 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID00809135 dme-miR-963-5p miRNA MIMAT0005477 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID01003129 dme-miR-985-3p miRNA MIMAT0005502 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID01149328 dme-miR-263a-5p miRNA MIMAT0000319 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID01244378 dme-miR-996-3p miRNA MIMAT0005515 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID01552904 dme-miR-252-5p miRNA MIMAT0005516 Trc8 mRNA 43476 Prediction 0.2381 Trc8 RAID02035188 dme-miR-279-3p miRNA MIMAT0000341 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID02227330 dme-miR-980-3p miRNA MIMAT0005496 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID02521707 dme-miR-274-5p miRNA MIMAT0000332 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID02628610 dme-miR-33-5p miRNA MIMAT0000342 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID02632766 dme-miR-286-3p miRNA MIMAT0000359 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID02647030 dme-mir-iab-4 miRNA MI0000432 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID03166708 dme-miR-iab-4-3p miRNA MIMAT0000413 Trc8 mRNA 43476 Prediction 0.2202 Trc8 RAID03196777 dme-miR-971-3p miRNA MIMAT0005487 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID03588685 dme-miR-281-2-5p miRNA MIMAT0000349 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID03884149 dme-miR-316-5p miRNA MIMAT0000408 Trc8 mRNA 43476 Prediction 0.1828 Trc8 RAID04045040 dme-miR-970-3p miRNA MIMAT0005486 Trc8 mRNA 43476 Prediction 0.1828