DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005464 dme-miR-iab-4as-3p 326115 CG31033 auuugCAUAUGACUUACAUAGg ||||:| | |||||| auauaGUAUGCAAAUUGUAUCa 2 18 163 184 [dm3:3R:25653098-25653119:-] 0.5542 133 6 -13.29 -0.1696 MIMAT0005488 dme-miR-972 326115 CG31033 cggaUUUAUAAGCAUAACAUgu | :| ||| ||||||| guacAUGUUUUCCUAUUGUAaa 3 19 206 227 [dm3:3R:25653055-25653076:-] 0.5542 142 0 -7.14 -0.2531 MIMAT0005491 dme-miR-975 326115 CG31033 uauguccuacauccuUCACAAau |||||| uguaucaauucauauAGUGUUag 3 9 178 200 [dm3:3R:25653082-25653104:-] 0.5542 120 0 -5.71 -0.1407 MIMAT0005509 dme-miR-991 326115 CG31033 ugaaagguuugaUGUUGAAAUu ||||||||| gucgacguuuuaACAACUUUAc 2 11 113 134 [dm3:3R:25653148-25653169:-] 0.5542 150 7 -10.71 -0.8656 MIMAT0010206 dme-miR-995* 326115 CG31033 gcGUCGA-GGGUGU-A-UUAAGCCc | ||| : ||:| | ||||||| auCUGCUGUACAUAGUAAAUUCGGu 2 21 90 114 [dm3:3R:25653168-25653192:-] 0.5542 149 7 -16.60 -0.8611 MIMAT0005026 dme-miR-1013 326115 CG31033 gcUCAAGCCGUAUG-AAAAUa | |||||: || ||||| uaAAUUCGGUCGACGUUUUAa 2 19 105 125 [dm3:3R:25653157-25653177:-] 0.5542 126 0 -10.41 -1.0745 MIMAT0011784 dme-miR-2279* 326115 CG31033 uuaaagugugugucuAUAAAUu |||||| uuuacuugauuauuuUAUUUAu 2 8 130 151 [dm3:3R:25653131-25653152:-] 0.5542 120 6 -3.47 -0.1039 MIMAT0011787 dme-miR-2280* 326115 CG31033 agUCAAUCGA-ACCU-UCAUUUAa | | ||| | | ||||||| gcAAUCUGCUGUACAUAGUAAAUu 2 21 87 110 [dm3:3R:25653172-25653195:-] 0.5277 142 7 -10.16 -0.4425 MIMAT0011791 dme-miR-2283 326115 CG31033 uaacagcauaaguacuAUAAAAg |||||| aacaacuuuacuugauUAUUUUa 2 8 124 146 [dm3:3R:25653136-25653158:-] 0.5542 120 6 -4.14 -0.2626 MIMAT0012199 dme-miR-2492 326115 CG31033 aaacuuucgaGAGCUGUUUUGua ||| ||||||| uugcucuauaCUC-ACAAAACca 3 14 48 69 [dm3:3R:25657322-25657343:-] 0.5304 131 0 -11.24 -0.1390 MIMAT0012209 dme-miR-2497 326115 CG31033 gacguuuguaacauUUACAACa ||||||| ----------cccuAAUGUUGc 2 9 1 12 [dm3:3R:25653270-25653281:-] 0.5953 140 7 -6.34 -0.2781 MIMAT0000114 dme-miR-9a 326115 CG31033 aguAUGUCGAUCUAUUGGUUUcu ||:| : | | ||||||| cucUAUACUCACAAAACCAAAac 3 21 51 73 [dm3:3R:25657318-25657340:-] 0.5304 140 0 -8.07 -0.1412 MIMAT0000332 dme-miR-274 326115 CG31033 uaaugGGCAAUCACA-GCCAGUGUUUu |:|||: | | : ||||||| ccuugCUGUUGCUCUAUACUCACAAAa 2 22 40 66 [dm3:3R:25657325-25657351:-] 0.5304 152 7 -14.28 -1.0248 MIMAT0000335 dme-miR-219 326115 CG31033 guuCUUAACGCA-AACCU-GUUAGu |::|||| | | || ||||| auuGGGUUGCAUAUACGAGCAAUCu 2 21 251 275 [dm3:3R:25653007-25653031:-] 0.5542 123 0 -11.57 -0.2275 MIMAT0000391 dme-miR-305 326115 CG31033 gucUCGUGGACUACUUCAUGUua ||:::: | ||||||| uauAGUGUUAGUCUAAGUACAug 3 21 190 212 [dm3:3R:25653070-25653092:-] 0.5542 132 0 -10.38 -0.1770 MIMAT0000392 dme-miR-9c 326115 CG31033 agAUGUCGAUCUUAUGGUUUcu ||:| : | || |||||| ucUAUACUCACAAAACCAAAac 3 21 52 73 [dm3:3R:25657318-25657339:-] 0.5304 140 0 -9.57 -0.1412 MIMAT0000395 dme-miR-9b 326115 CG31033 guAUGUCGAUUUUAGUGGUUUcu ||:| || | | |||||| ucUAUA-CUCACAAAACCAAAac 3 22 52 73 [dm3:3R:25657318-25657339:-] 0.5304 135 0 -7.20 -0.1385 MIMAT0000402 dme-miR-310 326115 CG31033 uuUCCGGCCCUUCAC-ACGUUAu || | | | |||| |||||| gaAGUCAGAGCAGUGCUGCAAUc 2 21 70 92 [dm3:3R:25653190-25653212:-] 0.5277 132 6 -13.67 -0.3357 MIMAT0000403 dme-miR-311 326115 CG31033 agUCCGGCCAC-UUAC-ACGUUAu | |:| | | |:|| |||||| agAAGUCAGAGCAGUGCUGCAAUc 2 21 69 92 [dm3:3R:25653190-25653213:-] 0.5277 123 6 -14.83 -0.3303 MIMAT0000412 dme-miR-iab-4-5p 326115 CG31033 agucCU-AUGUAAGUCAUAUGCa || ||: || |||||| acuuGAUUAUUUUAUUUAUACGu 2 19 133 155 [dm3:3R:25653127-25653149:-] 0.5542 121 6 -11.66 -0.1229 MIMAT0005463 dme-miR-iab-4as-5p 326115 CG31033 gccauAUGGAAGUCAUAUGCAUu ||::|| |||||||: uugauUAUUUUAUUUAUACGUGa 2 19 135 157 [dm3:3R:25653125-25653147:-] 0.5542 142 0 -13.51 -0.2913 MIMAT0005504 dme-miR-987 326115 CG31033 guaGUUAGGUCUGAU-AAAUGAAau |: |::| || | ||||||| cgaCGUUUUA-ACAACUUUACUUga 3 22 115 138 [dm3:3R:25653144-25653167:-] 0.5542 134 0 -8.59 -0.3383

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Atg16 RAID00633105 dme-miR-991-3p miRNA MIMAT0005509 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID00665759 dme-miR-274-5p miRNA MIMAT0000332 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID00723263 dme-miR-9a-5p miRNA MIMAT0000114 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID01038076 dme-miR-310-3p miRNA MIMAT0000402 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID01327535 dme-miR-311-3p miRNA MIMAT0000403 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID01794023 dme-mir-iab-4 miRNA MI0000432 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID01822242 dme-miR-305-5p miRNA MIMAT0000391 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID02333126 dme-miR-9c-5p miRNA MIMAT0000392 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID02367518 dme-miR-263a-5p miRNA MIMAT0000319 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID02375379 dme-miR-987-5p miRNA MIMAT0005504 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID02737123 dme-miR-219-5p miRNA MIMAT0000335 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID02885093 dme-miR-976-3p miRNA MIMAT0005492 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID03130709 dme-miR-iab-8-5p miRNA MIMAT0005463 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID03150228 dme-miR-iab-4-5p miRNA MIMAT0000412 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID03736942 dme-miR-965-3p miRNA MIMAT0005480 Atg16 mRNA 326115 Prediction 0.1828 Atg16 RAID03930056 dme-miR-9b-5p miRNA MIMAT0000395 Atg16 mRNA 326115 Prediction 0.1828