DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43611 CG2218 auAGUAAAGUAUACGUUGCAUUUAUGu ||| | | | | ||| ||||||: uaUCACUAC-UCU-CAA--UAAAUAUa 2 26 626 648 [dm3:3R:26251133-26251155:-] 0.4649 134 0 -7.29 -0.2041 MIMAT0000343 dme-miR-280 43611 CG2218 auaGUAAAGUAUACGUUGCAUUU-AUGu || ||| || :|: |||| ||| uacCAAUUC-UACCUAGAAUAAAGUACa 2 25 364 390 [dm3:3R:26251391-26251417:-] 0.5627 122 0 -10.22 -1.2643 MIMAT0000388 dme-miR-303 43611 CG2218 uggucaaAGGACACUUUGGAUUu | | | |||||||| aauaaagUACAAUAAAACCUAAg 2 17 380 402 [dm3:3R:26251379-26251401:-] 0.5627 148 7 -12.58 -1.0390 MIMAT0005464 dme-miR-iab-4as-3p 43611 CG2218 auuugcauaUGACUUACAUAGg :| | ||||||| cccgauucgGCAGUAUGUAUCa 2 14 207 228 [dm3:3R:26251553-26251574:-] 0.6044 145 7 -10.82 -0.8371 MIMAT0005517 dme-miR-997 43611 CG2218 acUUUGAGGAAGCUCAAACCc | |:||| | ||||||| auAUAUUCC-AC-AGUUUGGc 2 20 434 452 [dm3:3R:26251329-26251347:-] 0.5055 147 7 -13.22 -0.4002 MIMAT0005517 dme-miR-997 43611 CG2218 acuuugaggaaGCUCAAACCc :|||||||| gauugccgcaaUGAGUUUGGu 2 11 40 60 [dm3:3R:26251721-26251741:-] 0.5242 146 7 -15.93 -0.2156 MIMAT0012196 dme-miR-2489 43611 CG2218 ugacGUUUAUGUUGUAUGUUAu | |: |:|| :|||||| cuacCUAGAAUAAAGUACAAUa 2 19 372 393 [dm3:3R:26251388-26251409:-] 0.5627 142 6 -9.61 -0.3019 MIMAT0012199 dme-miR-2492 43611 CG2218 aaACUU-UCGAGAGCUGUUUUGUa | || | | | |:|||||| ucUCAAUAAAUAUAAAUAAAACAa 2 22 635 658 [dm3:3R:26251123-26251146:-] 0.4649 132 6 -5.82 -0.5286 MIMAT0012215 dme-miR-2500 43611 CG2218 gacuCCAG-GUGU--GUGUUUUAGg |||| || | |:||||||| gucuGGUCGCAGAAUCGCAAAAUCg 2 19 148 172 [dm3:3R:26251609-26251633:-] 0.5568 156 7 -18.15 -0.1520 MIMAT0000109 dme-miR-4 43611 CG2218 aguuACCAACA-GAUCGAAAUa | ||||| | |||||| guuuUAGUUGUAAUUGCUUUAu 2 18 536 557 [dm3:3R:26251224-26251245:-] 0.5205 128 6 -12.65 -0.1136 MIMAT0000109 dme-miR-4 43611 CG2218 agUUACCAACAGAUCGAAAUa ||| || | ||||| | gaAAUUGUCGAAAAGCUUAAa 2 20 504 524 [dm3:3R:26251257-26251277:-] 0.5232 123 0 -8.59 -0.1040 MIMAT0000391 dme-miR-305 43611 CG2218 gucucGUGGA-C-UACUUCAUGUUa :|||| | || |||||||| aauucUACCUAGAAUAAAGUACAAu 2 19 368 392 [dm3:3R:26251389-26251413:-] 0.5627 160 7 -16.43 -1.2306 MIMAT0000396 dme-let-7 43611 CG2218 ugAUAUGU-UGG--AUGAUGGAgu ||| || ||| | |||||| uaUAUUCAUACCAAUUCUACCUag 3 20 356 379 [dm3:3R:26251402-26251425:-] 0.5627 137 0 -12.94 -0.1665 MIMAT0005483 dme-miR-1002 43611 CG2218 agcGGGAAACAUAGGUGAUG-AAUu |||| | || |||| ||| agcCCCUAGGCCUCGUCUACGUUAg 2 22 102 126 [dm3:3R:26251655-26251679:-] 0.5826 121 0 -15.62 -0.5228 MIMAT0005492 dme-miR-976 43611 CG2218 cguaacUACUAUUGAUU-AGGUu || | | |||| |||| aguacaAUAAAACCUAAGUCCAa 2 17 385 407 [dm3:3R:26251374-26251396:-] 0.5627 120 0 -8.09 -1.1069 MIMAT0005520 dme-miR-1000 43611 CG2218 ugacgacacuguccUGUUAUa |||||| accuagaauaaaguACAAUAa 2 8 374 394 [dm3:3R:26251387-26251407:-] 0.5627 120 6 -6.16 -0.1265

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG2218 RAID00372671 dme-miR-137-3p miRNA MIMAT0005507 CG2218 mRNA 43611 Prediction 0.1828 CG2218 RAID00427072 dme-miR-190-5p miRNA MIMAT0005467 CG2218 mRNA 43611 Prediction 0.2202 CG2218 RAID00439780 dme-miR-1000-5p miRNA MIMAT0005520 CG2218 mRNA 43611 Prediction 0.2202 CG2218 RAID00773354 dme-miR-305-5p miRNA MIMAT0000391 CG2218 mRNA 43611 Prediction 0.2202 CG2218 RAID00787470 dme-miR-4-3p miRNA MIMAT0000109 CG2218 mRNA 43611 Prediction 0.1828 CG2218 RAID01056709 dme-miR-316-5p miRNA MIMAT0000408 CG2218 mRNA 43611 Prediction 0.2202 CG2218 RAID01099499 dme-miR-997-5p miRNA MIMAT0005517 CG2218 mRNA 43611 Prediction 0.1828 CG2218 RAID01833314 dme-miR-976-3p miRNA MIMAT0005492 CG2218 mRNA 43611 Prediction 0.1828 CG2218 RAID02264732 dme-miR-303-5p miRNA MIMAT0000388 CG2218 mRNA 43611 Prediction 0.1828 CG2218 RAID02301168 dme-let-7-5p miRNA MIMAT0000396 CG2218 mRNA 43611 Prediction 0.1828 CG2218 RAID02443681 dme-miR-1002-5p miRNA MIMAT0005483 CG2218 mRNA 43611 Prediction 0.1828 CG2218 RAID03415626 dme-miR-992-3p miRNA MIMAT0005510 CG2218 mRNA 43611 Prediction 0.1828