DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 43734 CstF-50 cacgUUUGCUAAAAGUU-GUGu |::| :| ||||| ||| acagAGGCUGUAUUCAACCACa 2 18 145 166 [dm3:3R:27561480-27561501:-] 0.7706 121 0 -11.58 -1.0830 MIMAT0005500 dme-miR-984 43734 CstF-50 uuuaagguuggcauaaAUGGAGu |||||| aacuuauucauuuuagUACCUCc 2 8 18 40 [dm3:3R:27561606-27561628:-] 0.7271 120 6 -9.50 -0.2742 MIMAT0005502 dme-miR-985 43734 CstF-50 acggGCUGGUAACCUUGUAAAc :|:|:: || || |||| ----UGGCUG-UGCAAGAUUUu 2 19 1 17 [dm3:3R:27561629-27561645:-] 0.7271 120 0 -5.59 -0.1785 MIMAT0005508 dme-miR-990 43734 CstF-50 ccgguUGAGUC--UUGCC-ACUUa | |||| ||||| |||| caaauAAUCAGUAAACGGAUGAAg 2 17 359 382 [dm3:3R:27561264-27561287:-] 0.6391 123 0 -14.76 -0.7667 MIMAT0005509 dme-miR-991 43734 CstF-50 ugaaaGGUUUGAUGUUGAAAUu :|:|| || ||||||| accaaUCGAA-UAAAACUUUAa 2 18 387 407 [dm3:3R:27561239-27561259:-] 0.4592 155 7 -11.58 -1.2684 MIMAT0005509 dme-miR-991 43734 CstF-50 ugaaaGGUUUGAUGUUGAAAUu :|:|| || ||||||| accaaUCGAA-UAAAACUUUAa 2 18 15 35 [dm3:3R:27561239-27561259:-] 0.4592 155 7 -11.58 -1.2207 MIMAT0005021 dme-miR-1008 43734 CstF-50 acauuuguguUUUUCGACACu :::||||||| guuuaucuguGGGAGCUGUGu 2 12 64 84 [dm3:3R:27561562-27561582:-] 0.7271 143 7 -13.41 -0.4319 MIMAT0005021 dme-miR-1008 43734 CstF-50 acauuuguguuuuUCGACACu :|||||| ------------uGGCUGUGc 2 9 1 9 [dm3:3R:27561637-27561645:-] 0.7271 124 6 -9.51 -0.1723 MIMAT0012216 dme-miR-2501 43734 CstF-50 aaucgGGUCCGUGAGGUUUGAAug ||| |: : |||||| cuacaCCAAUCGAAUAAAACUUua 3 20 383 406 [dm3:3R:27561240-27561263:-] 0.4592 127 0 -10.79 -0.2035 MIMAT0012216 dme-miR-2501 43734 CstF-50 aaucggguccgugagguUUGAAUg |||||| uggcugugcaagauuuuAACUUAu 2 8 1 24 [dm3:3R:27561622-27561645:-] 0.7271 120 6 -11.80 -0.2126 MIMAT0012216 dme-miR-2501 43734 CstF-50 aaucgGGUCCGUGAGGUUUGAAug ||| |: : |||||| cuacaCCAAUCGAAUAAAACUUua 3 20 11 34 [dm3:3R:27561240-27561263:-] 0.4592 127 0 -10.79 -0.1806 MIMAT0012217 dme-miR-2501* 43734 CstF-50 uuucuuucaaacuaACGUUCUca ||||||| --------uggcugUGCAAGAuu 3 10 1 15 [dm3:3R:27561631-27561645:-] 0.7271 125 0 -8.72 -0.1295 MIMAT0000333 dme-miR-275 43734 CstF-50 gcgcgcgaUGAAGUCCAUGGAcu |:||:| |||||| acuuauucAUUUUA-GUACCUcc 3 16 19 40 [dm3:3R:27561606-27561627:-] 0.7271 133 0 -10.90 -0.2099 MIMAT0000334 dme-miR-92a 43734 CstF-50 uauccggcccuguuCACGUUac |||||| ---------uggcuGUGCAAga 3 9 1 13 [dm3:3R:27561633-27561645:-] 0.7271 120 0 -11.00 -0.5580 MIMAT0000358 dme-miR-92b 43734 CstF-50 cguccggccCUGAUCACGUUaa |:|| |||||| --------uGGCU-GUGCAAga 3 14 1 13 [dm3:3R:27561633-27561645:-] 0.7271 127 0 -11.01 -0.5304 MIMAT0000393 dme-miR-306 43734 CstF-50 aacucUCAGU-GAUUCAUGGAcu | ||| :| ||||||| aacuuAUUCAUUUUAGUACCUcc 3 18 18 40 [dm3:3R:27561606-27561628:-] 0.7271 136 0 -13.14 -0.2213 MIMAT0000396 dme-let-7 43734 CstF-50 ugAUAUGUUGGAUGAUGGAGu ||| || ::|| |||||| cuUAUUCAUUUUAGUACCUCc 2 20 20 40 [dm3:3R:27561606-27561626:-] 0.7271 139 6 -14.69 -0.2695 MIMAT0000402 dme-miR-310 43734 CstF-50 uuuccggcccuucACACGUUau ||||||| ---------uggcUGUGCAAga 3 10 1 13 [dm3:3R:27561633-27561645:-] 0.7271 125 0 -9.88 -0.5580 MIMAT0000403 dme-miR-311 43734 CstF-50 aguccggccACUUACACGUUau ||: ||||||| ---------UGGCUGUGCAAga 3 14 1 13 [dm3:3R:27561633-27561645:-] 0.7271 133 0 -10.22 -0.5580 MIMAT0000404 dme-miR-312 43734 CstF-50 aguccggcagaguuCACGUUau |||||| ---------uggcuGUGCAAga 3 9 1 13 [dm3:3R:27561633-27561645:-] 0.7271 120 0 -13.30 -0.5544 MIMAT0000405 dme-miR-313 43734 CstF-50 agcccgacacuuuuCACGUUau |||||| ---------uggcuGUGCAAga 3 9 1 13 [dm3:3R:27561633-27561645:-] 0.7271 120 0 -12.90 -0.5544 MIMAT0000406 dme-miR-314 43734 CstF-50 ggcuugaauaaccgAGCUUAu |||||| ugaagcuacaccaaUCGAAUa 2 8 378 398 [dm3:3R:27561248-27561268:-] 0.4592 120 6 -11.39 -0.1086 MIMAT0000406 dme-miR-314 43734 CstF-50 ggcuugaauaaccgAGCUUAu |||||| ugaagcuacaccaaUCGAAUa 2 8 6 26 [dm3:3R:27561248-27561268:-] 0.4592 120 6 -11.39 -0.1373 MIMAT0005485 dme-miR-969 43734 CstF-50 uuuuGAACGAAUCACCUUGAg :|||| | |||||||| ucgcUUUGC-UCGUGGAACUc 2 18 205 224 [dm3:3R:27561422-27561441:-] 0.7706 159 7 -21.68 -0.1508 MIMAT0005487 dme-miR-971 43734 CstF-50 agUGACAUUCUUCAUUGUGGUu || | | |||| |||||| --AC-GGAUGAAGCUACACCAa 2 21 1 19 [dm3:3R:27561255-27561273:-] 0.5076 130 6 -16.06 -0.2349 MIMAT0005024 dme-miR-1011 43734 CstF-50 gacGCUCGC-UAAACUUGGUUAuu ||: :| | | |||||| --aCGGAUGAAGCUACACCAAUcg 3 21 1 22 [dm3:3R:27561252-27561273:-] 0.5076 123 0 -12.40 -0.1460

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CstF-50 RAID00102195 dme-miR-1011-3p miRNA MIMAT0005024 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID00782722 dme-miR-969-5p miRNA MIMAT0005485 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID00915471 dme-let-7-5p miRNA MIMAT0000396 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID01270789 dme-miR-991-3p miRNA MIMAT0005509 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID01506809 dme-miR-310-3p miRNA MIMAT0000402 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID01982977 dme-miR-311-3p miRNA MIMAT0000403 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID02417873 dme-miR-312-3p miRNA MIMAT0000404 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID02452730 dme-miR-306-5p miRNA MIMAT0000393 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID02483966 dme-miR-92b-3p miRNA MIMAT0000358 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID02866822 dme-miR-313-3p miRNA MIMAT0000405 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID02962483 dme-miR-275-3p miRNA MIMAT0000333 CstF-50 mRNA 43734 Prediction 0.1828 CstF-50 RAID03097862 dme-miR-971-3p miRNA MIMAT0005487 CstF-50 mRNA 43734 Prediction 0.2202 CstF-50 RAID03323067 dme-miR-314-3p miRNA MIMAT0000406 CstF-50 mRNA 43734 Prediction 0.2202 CstF-50 RAID03383904 dme-miR-92a-3p miRNA MIMAT0000334 CstF-50 mRNA 43734 Prediction 0.1828