DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 32581 kat80 ucagcguccgaggUGAAU-UUAUAAau |:||: |||||| uaguuauuuaaugAUUUGUAAUAUUaa 3 14 367 393 [dm3:X:16161121-16161147:-] 0.5634 128 0 -5.70 -0.2997 MIMAT0000364 dme-miR-289 32581 kat80 ucagcGUCCGAGGUGAAU---UUA-UAAAu ::||| ::| ||| ||| |||| aaaaaUGGGCCUUAGUUAUUUAAUGAUUUg 2 22 355 384 [dm3:X:16161130-16161159:-] 0.5688 120 0 -10.76 -1.2750 MIMAT0000388 dme-miR-303 32581 kat80 ugGUCAAAGGACACUUUGGAUUu :| || ||| | |||||| auUAUUUACCU---AUACCUAAg 2 22 422 441 [dm3:X:16161073-16161092:-] 0.5139 121 6 -11.11 -0.1102 MIMAT0005500 dme-miR-984 32581 kat80 uuUAAGGUUGGCAUAAAUGGAgu || :||: ||||||||| auAUAAUAAU--UAUUUACCUau 3 22 414 434 [dm3:X:16161080-16161100:-] 0.5501 138 0 -11.20 -0.1452 MIMAT0005521 dme-miR-1001 32581 kat80 acuaggaacccucAAAUGGGu ||||||: uauauaauaauuaUUUACCUa 2 9 413 433 [dm3:X:16161081-16161101:-] 0.5501 124 0 -8.95 -0.3809 MIMAT0011784 dme-miR-2279* 32581 kat80 uuaAAGUGUG-UGUCUAUAAAUu ||:|:|: |:| |||||| uaaUUUAUAUAAUAAUUAUUUAc 2 20 408 430 [dm3:X:16161084-16161106:-] 0.5501 130 6 -6.79 -0.1615 MIMAT0011784 dme-miR-2279* 32581 kat80 uuaaaguguGUGUCUAUAAAUu | :|| |||||| aaaaugggcCUUAGUUAUUUAa 2 14 356 377 [dm3:X:16161137-16161158:-] 0.5688 121 6 -6.18 -0.1211 MIMAT0012196 dme-miR-2489 32581 kat80 ugACGUUU-AUGUUGUAUGUUAu |||||| || :|||:||| uaUGCAAACUAAUUUAUAUAAUa 2 21 399 421 [dm3:X:16161093-16161115:-] 0.5748 147 0 -13.57 -0.1420 MIMAT0000111 dme-miR-6 32581 kat80 uuUUUCUUGUCGGU-GACA-CUAu || | |:| ||| |||| ||| gcAACGCAUAUCCAGCUGUAGAUg 2 21 3 26 [dm3:X:16161488-16161511:-] 0.5733 127 0 -12.32 -0.1427 MIMAT0012531 dme-miR-10-3p 32581 kat80 uuUGGA-GAGAUCUUGGCUUAAAc |::| :| |: || | ||||| uaAUUUGUUAUGCAAACUAAUUUa 2 22 391 414 [dm3:X:16161100-16161123:-] 0.5748 124 0 -3.14 -0.1029 MIMAT0000337 dme-miR-276a 32581 kat80 ucUCGUGCCAUACUUCA-AGGAu | :||| || ||| |||| ugAUUACGAAAUCCAGUGUCCUg 2 21 102 124 [dm3:X:16161390-16161412:-] 0.5743 120 0 -13.59 -0.2482 MIMAT0000354 dme-miR-276b 32581 kat80 ucUCGUGCCAUAAUUCA-AGGAu | :||| || ||| |||| ugAUUACGAAAUCCAGUGUCCUg 2 21 102 124 [dm3:X:16161390-16161412:-] 0.5743 120 0 -13.58 -0.2482 MIMAT0000362 dme-miR-263b 32581 kat80 cacuuaaGAGGGUC-ACGGUUc |||: || |||||| uuugucgCUCUAAGCUGCCAAa 2 15 138 159 [dm3:X:16161355-16161376:-] 0.5743 122 6 -14.53 -0.8559 MIMAT0000408 dme-miR-316 32581 kat80 gcggucauucgccuUUUUCUgu |||||| auuugaaaauauauAAAAGAaa 3 9 449 470 [dm3:X:16161044-16161065:-] 0.5139 120 0 -7.74 -0.3549 MIMAT0000413 dme-miR-iab-4-3p 32581 kat80 caaugcauaugacuuccAUAUGGc |||||| uauaauaauuauuuaccUAUACCu 2 8 415 438 [dm3:X:16161076-16161099:-] 0.5501 120 6 -6.54 -0.1716 MIMAT0005019 dme-miR-1006 32581 kat80 gauacuuAUUCUUUAGCUUAAAu || | || | ||||| aauuuguUAUGCAAACUAAUUUa 2 17 392 414 [dm3:X:16161100-16161122:-] 0.5748 124 0 -2.70 -0.1009

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score kat80 RAID00162883 dme-miR-6-3p miRNA MIMAT0000111 kat80 mRNA 32581 Prediction 0.1828 kat80 RAID00401296 dme-miR-1006-3p miRNA MIMAT0005019 kat80 mRNA 32581 Prediction 0.1828 kat80 RAID01398860 dme-mir-307a miRNA MI0000418 kat80 mRNA 32581 Prediction 0.1828 kat80 RAID01634703 dme-miR-316-5p miRNA MIMAT0000408 kat80 mRNA 32581 Prediction 0.1828 kat80 RAID01735845 dme-miR-10-3p miRNA MIMAT0012531 kat80 mRNA 32581 Prediction 0.1828 kat80 RAID02716051 dme-miR-263b-5p miRNA MIMAT0000362 kat80 mRNA 32581 Prediction 0.2202 kat80 RAID03060718 dme-miR-iab-4-3p miRNA MIMAT0000413 kat80 mRNA 32581 Prediction 0.1828 kat80 RAID03240990 dme-miR-276a-3p miRNA MIMAT0000337 kat80 mRNA 32581 Prediction 0.1828 kat80 RAID03329119 dme-miR-305-5p miRNA MIMAT0000391 kat80 mRNA 32581 Prediction 0.1828 kat80 RAID03455580 dme-miR-276b-3p miRNA MIMAT0000354 kat80 mRNA 32581 Prediction 0.1828