DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 53556 dbo cacguuugcuaaaaGUUGUGu |||||| guugccuuuuacacCAACACu 2 8 1123 1143 [dm3:3L:15824715-15824735:+] 0.4763 120 6 -7.22 -0.1247 MIMAT0000364 dme-miR-289 53556 dbo ucagcguccgaggugaauUUAUAAAu ||||||| uaaacaucacaauggugcAAUAUUUc 2 9 648 673 [dm3:3L:15824240-15824265:+] 0.4615 140 7 -9.11 -0.1043 MIMAT0000388 dme-miR-303 53556 dbo uggucaaaggaCAC-UUUGGAUUu ||| ||||||| aaauaauagaaGUGUUAACCUAAg 2 13 1429 1452 [dm3:3L:15825021-15825044:+] 0.4763 143 7 -12.83 -0.6694 MIMAT0000388 dme-miR-303 53556 dbo uggucaaaggacacuUUGGAUUu ||||||: acaaaaucaaauauuAACCUAGa 2 9 512 534 [dm3:3L:15824104-15824126:+] 0.4615 124 0 -11.49 -0.1162 MIMAT0005482 dme-miR-967 53556 dbo gcgaagaggucucCAUAGAGa ||||||| auuacacgcuuucGUAUCUCa 2 9 1176 1196 [dm3:3L:15824768-15824788:+] 0.4763 140 7 -14.70 -0.9231 MIMAT0005499 dme-miR-983 53556 dbo aguaaucaagcuuugCAUAAUa |||||| ucaaguaacaaauugGUAUUAa 2 8 580 601 [dm3:3L:15824172-15824193:+] 0.4615 120 6 -4.02 -0.1581 MIMAT0005502 dme-miR-985 53556 dbo acgggcugguaaccUUGUAAAc ||||||| cguaguuaaaaaauAACAUUUc 2 9 1374 1395 [dm3:3L:15824966-15824987:+] 0.4763 140 7 -4.72 -0.5849 MIMAT0005509 dme-miR-991 53556 dbo ugaaagGUUUGAUGUUGAAAUu :||: | |||||||| cagccgUAAGAU-CAACUUUAa 2 17 907 927 [dm3:3L:15824499-15824519:+] 0.4615 150 7 -14.07 -0.6108 MIMAT0011784 dme-miR-2279* 53556 dbo uuAAAGUGUGUGUCUAUAAAuu | |:| :|| : |||||| uaUGUUAAGCAAGUAUAUUUua 3 21 405 426 [dm3:3L:15823997-15824018:+] 0.4876 136 0 -4.42 -0.1087 MIMAT0011791 dme-miR-2283 53556 dbo uaACA-GC-AUAAGUAC-UAUAAAAg ||| :| || || | ||||||| acUGUAUGUUAAGCAAGUAUAUUUUa 2 22 401 426 [dm3:3L:15823993-15824018:+] 0.4876 150 7 -7.25 -1.0992 MIMAT0012194 dme-miR-307-as* 53556 dbo gguAGUGUUGGAGGAACUCACu || :|::: : ||||||| auuUCCUAGUUGUGUUGAGUGg 2 20 1391 1412 [dm3:3L:15824983-15825004:+] 0.4763 151 7 -15.04 -0.3142 MIMAT0012196 dme-miR-2489 53556 dbo ugacgUUUAUGUUGUA-UGUUAu |||| ||||| ||||| guccgAAAUUAAACAUCACAAUg 2 18 639 661 [dm3:3L:15824231-15824253:+] 0.4615 133 0 -11.01 -0.3583 MIMAT0012199 dme-miR-2492 53556 dbo aaacuuucgaGAGCUGUUUUGUa || |||||||| aucuaaucgaCUAAACAAAACAu 2 14 194 216 [dm3:3L:15823786-15823808:+] 0.4876 149 7 -12.04 -0.7136 MIMAT0012199 dme-miR-2492 53556 dbo aaacuuucgagagcUGUUUUGUa |||||||| uucuuucgaaaaaaACAAAACAa 2 10 493 515 [dm3:3L:15824085-15824107:+] 0.4615 145 7 -14.33 -1.1982 MIMAT0012208 dme-miR-2497* 53556 dbo uuGUUGA-UGUAAAACGUUAC-GAAUg ||: | | :|||| :||| |||| auCAGGUCAAGUUUUAAGAUGACUUAu 2 24 990 1016 [dm3:3L:15824582-15824608:+] 0.4615 126 0 -10.62 -0.4492 MIMAT0012208 dme-miR-2497* 53556 dbo uuGUUGAUGUAAAACGUUA-CGAAUg ||||| | || ||| ||||| acCAACUCGAAUU---AAUCGCUUAg 2 24 1050 1072 [dm3:3L:15824642-15824664:+] 0.4615 123 0 -11.05 -0.7084 MIMAT0012209 dme-miR-2497 53556 dbo gacguUUGUAACAUUUACAACa ||:| | ||||||||| aacuuAAUA-UCUAAAUGUUGc 2 18 432 452 [dm3:3L:15824024-15824044:+] 0.4876 159 7 -11.42 -0.3768 MIMAT0012209 dme-miR-2497 53556 dbo gacguuuguaACAUUUACAACa || |||||||| ccauugcugaUG-AAAUGUUGu 2 13 24 44 [dm3:3L:15823616-15823636:+] 0.4560 146 7 -12.77 -0.2848 MIMAT0012209 dme-miR-2497 53556 dbo gaCGUUUGU-AACAUUU-ACAACa |:: ||| || |||| ||||| agGUGCACAUUUAUAAACUGUUGu 2 21 1210 1233 [dm3:3L:15824802-15824825:+] 0.4763 131 0 -12.38 -0.9314 MIMAT0012213 dme-miR-2499 53556 dbo augccugcacUUACAGUAGGCGUa || :||||||| cacuucuacuAACAAUAUCCGCAa 2 15 160 183 [dm3:3L:15823752-15823775:+] 0.4876 142 7 -12.59 -0.9626 MIMAT0012215 dme-miR-2500 53556 dbo gacuccaggUG-UGUGUUUUAGg || | |||||||| ucgaaaaaaACAAAACAAAAUCa 2 14 498 520 [dm3:3L:15824090-15824112:+] 0.4615 148 7 -10.86 -1.2161 MIMAT0012215 dme-miR-2500 53556 dbo gacuccaggUGUGU-GUUUUAGg |:|:| ||||||: aaaauaaaaAUAUAUCAAAAUU- 2 14 1491 1512 [dm3:3L:15825083-15825104:+] 0.4763 132 0 -6.05 -0.3611 MIMAT0012215 dme-miR-2500 53556 dbo gacuccagguGUGUGUUUUAGg :|: ||||||: aacaauuauuUAUUCAAAAUUa 2 13 1148 1169 [dm3:3L:15824740-15824761:+] 0.4763 128 0 -5.28 -0.2267 MIMAT0012216 dme-miR-2501 53556 dbo aaucggguccgugagguUUGAAUg |||||| aaguauauuuuauaaauAACUUAa 2 8 415 438 [dm3:3L:15824007-15824030:+] 0.4876 120 6 -7.56 -0.1460 MIMAT0000109 dme-miR-4 53556 dbo aguuaccaacAGAUCGAAAUa | |||||||| uuauuuauauUAUAGCUUUAa 2 12 1305 1325 [dm3:3L:15824897-15824917:+] 0.4763 147 7 -7.44 -1.1779 MIMAT0012531 dme-miR-10-3p 53556 dbo uuuggagagaucuuggCUUAAAc |||||| accgaauaauugcaaaGAAUUUa 2 8 761 783 [dm3:3L:15824353-15824375:+] 0.4615 120 6 -9.16 -0.1152 MIMAT0000319 dme-miR-263a 53556 dbo cacuuaagaaggucacGGUAAUUg ||||||| caagcuuaaaaaaaaaCCAUUAAg 2 9 809 832 [dm3:3L:15824401-15824424:+] 0.4615 140 7 -7.78 -0.6057 MIMAT0000334 dme-miR-92a 53556 dbo uauccggcccUGUU--CACGUUAc |||| ||||||| auuaaacaucACAAUGGUGCAAUa 2 13 646 669 [dm3:3L:15824238-15824261:+] 0.4615 147 7 -8.73 -0.4700 MIMAT0000338 dme-miR-277 53556 dbo acaGCAUGGUCUAUCACGUAAAu :| |: ||| | |||||| ugaUGAAUAAGA-AUAGCAUUUa 2 21 1270 1291 [dm3:3L:15824862-15824883:+] 0.4763 122 6 -8.73 -0.1391 MIMAT0000351 dme-miR-124 53556 dbo gaaccGUAAGUGGCGC-ACGGAAu ||||: |: :| |||||| caacaCAUUUUCUUUGUUGCCUUu 2 19 1108 1131 [dm3:3L:15824700-15824723:+] 0.4512 126 6 -15.06 -0.5455 MIMAT0000352 dme-miR-79 53556 dbo uaCGA--AACCAUUAGAUCGAAAu ||| || || | ||||||| aaGCUUAUUUAUAUUAUAGCUUUa 2 21 1301 1324 [dm3:3L:15824893-15824916:+] 0.4763 155 7 -11.97 -1.1951 MIMAT0000358 dme-miR-92b 53556 dbo cguccggcccUGAUCACGUUAa | |:||||||| uaaacaucacAAUGGUGCAAUa 2 13 648 669 [dm3:3L:15824240-15824261:+] 0.4615 148 7 -10.53 -0.4700 MIMAT0000391 dme-miR-305 53556 dbo guCUCGUGGACU-ACUUCA-UGUUa |||| |: | | |||| |||| aaGAGCUCUAAAGUCAAGUAACAAa 2 22 567 591 [dm3:3L:15824159-15824183:+] 0.4615 124 0 -12.79 -0.9879 MIMAT0000402 dme-miR-310 53556 dbo uuuccggcccUUCACACGUUAu || ||||||| uaaacaucacAAUGGUGCAAUa 2 13 648 669 [dm3:3L:15824240-15824261:+] 0.4615 144 7 -10.48 -0.4700 MIMAT0000403 dme-miR-311 53556 dbo aguccggccacUUA-CACGUUAu ||| ||||||| uuaaacaucacAAUGGUGCAAUa 2 12 647 669 [dm3:3L:15824239-15824261:+] 0.4615 146 7 -10.97 -0.4733 MIMAT0000404 dme-miR-312 53556 dbo aguccgGCAGAGUU--CACGUUAu | || ||| ||||||| auuaaaCAUCACAAUGGUGCAAUa 2 17 646 669 [dm3:3L:15824238-15824261:+] 0.4615 151 7 -11.81 -0.4600 MIMAT0000404 dme-miR-312 53556 dbo agUCCGGCAGAGUUCACGU-UAu || :: |:|:|:||||| || uuAGUUUAUUUUAGGUGCACAUu 2 21 1198 1220 [dm3:3L:15824790-15824812:+] 0.4763 128 0 -13.58 -0.6600 MIMAT0000405 dme-miR-313 53556 dbo agcccgacacUUUUCACGUUAu || :||||||| uaaacaucacAAUGGUGCAAUa 2 13 648 669 [dm3:3L:15824240-15824261:+] 0.4615 148 7 -10.48 -0.4700 MIMAT0000406 dme-miR-314 53556 dbo ggCUUGAAUAACCGAGCUUAu |||: | ||||||| cuGAAUGAACCAACUCGAAUu 2 20 1042 1062 [dm3:3L:15824634-15824654:+] 0.4615 143 7 -14.94 -0.5636 MIMAT0000407 dme-miR-315 53556 dbo cgaaagacUCGUUGUUAGUUUu | ||| ||||||| aaaaacaaAACAA-AAUCAAAu 2 15 503 523 [dm3:3L:15824095-15824115:+] 0.4615 148 7 -6.65 -0.9695 MIMAT0000407 dme-miR-315 53556 dbo cgaaagacucguuguUAGUUUu |||||| uaaaaauaaaaauauAUCAAAa 2 8 1489 1510 [dm3:3L:15825081-15825102:+] 0.4763 120 6 -6.11 -0.2637 MIMAT0005467 dme-miR-190 53556 dbo guugGUUCUUAUAGUUUGUAUAGa :|| |||| |||:||||| uauaUAAAAAUA-AAAAUAUAUCa 2 21 1485 1507 [dm3:3L:15825077-15825099:+] 0.4763 150 0 -8.73 -0.1060 MIMAT0005506 dme-miR-989 53556 dbo caAGGUGAUGCAGUGUAGUGu |||: |: ||||||| ugUCCGAAAUUAAACAUCACa 2 20 638 658 [dm3:3L:15824230-15824250:+] 0.4615 147 7 -17.94 -0.9241 MIMAT0005019 dme-miR-1006 53556 dbo gauaCUUAUU--CUUUAGCUUAAAu |||||| | || |||||| aaccGAAUAAUUGCAA-AGAAUUUa 2 20 760 783 [dm3:3L:15824352-15824375:+] 0.4615 128 6 -8.63 -0.1024 MIMAT0005024 dme-miR-1011 53556 dbo gacgcucGCUAAACUUGG-UUAUu :|| |||||| |||| gacuauaUGAAGUGAACCGAAUAa 2 17 746 769 [dm3:3L:15824338-15824361:+] 0.4615 124 0 -14.21 -0.9103 MIMAT0005027 dme-miR-1014 53556 dbo gacguUUACUUUUACUUAAAa ||| : || |||||| cgaauAAUUGCAAAGAAUUUa 2 17 763 783 [dm3:3L:15824355-15824375:+] 0.4615 128 6 -7.31 -0.1107 MIMAT0005030 dme-miR-1017 53556 dbo ccuacucaaacccaucUCGAAAg |||||| agcuuauuuauauuauAGCUUUa 2 8 1302 1324 [dm3:3L:15824894-15824916:+] 0.4763 120 6 -4.91 -0.1389

DNA & RNA Element - miRecords Gene Name miRNA Species miRNA Mature ID miRNA Regulation Target Site Position Pubmed ID dbo Drosophila melanogaster dme-miR-8 NA NA 20005803

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dbo RAID00040184 dme-miR-92a-3p miRNA MIMAT0000334 dbo mRNA 53556 Prediction 0.2202 dbo RAID00076579 dme-miR-310-3p miRNA MIMAT0000402 dbo mRNA 53556 Prediction 0.2202 dbo RAID00472474 dme-miR-977-3p miRNA MIMAT0005493 dbo mRNA 53556 Prediction 0.1828 dbo RAID00477789 dme-miR-969-5p miRNA MIMAT0005485 dbo mRNA 53556 Prediction 0.1828 dbo RAID00500199 dme-miR-991-3p miRNA MIMAT0005509 dbo mRNA 53556 Prediction 0.1828 dbo RAID00663223 dme-miR-989-3p miRNA MIMAT0005506 dbo mRNA 53556 Prediction 0.2202 dbo RAID00785665 dme-miR-4-3p miRNA MIMAT0000109 dbo mRNA 53556 Prediction 0.2202 dbo RAID00819455 dme-miR-971-3p miRNA MIMAT0005487 dbo mRNA 53556 Prediction 0.1828 dbo RAID00955523 dme-miR-994-5p miRNA MIMAT0005513 dbo mRNA 53556 Prediction 0.1828 dbo RAID00965449 dme-miR-1006-3p miRNA MIMAT0005019 dbo mRNA 53556 Prediction 0.2202 dbo RAID00978668 dme-miR-1014-3p miRNA MIMAT0005027 dbo mRNA 53556 Prediction 0.2202 dbo RAID01130281 dme-miR-92b-3p miRNA MIMAT0000358 dbo mRNA 53556 Prediction 0.2202 dbo RAID01132007 dme-miR-284-3p miRNA MIMAT0000348 dbo mRNA 53556 Prediction 0.1828 dbo RAID01160385 dme-miR-263a-5p miRNA MIMAT0000319 dbo mRNA 53556 Prediction 0.1828 dbo RAID01273122 dme-miR-8-3p miRNA MIMAT0000113 dbo mRNA 53556 Prediction 0.1828 dbo RAID01351301 dme-miR-79-3p miRNA MIMAT0000352 dbo mRNA 53556 Prediction 0.2202 dbo RAID01544116 dme-miR-190-5p miRNA MIMAT0005467 dbo mRNA 53556 Prediction 0.1828 dbo RAID01808628 dme-miR-967-5p miRNA MIMAT0005482 dbo mRNA 53556 Prediction 0.1828 dbo RAID01893239 dme-miR-14-3p miRNA MIMAT0000120 dbo mRNA 53556 Prediction 0.1828 dbo RAID01896818 dme-miR-1017-3p miRNA MIMAT0005030 dbo mRNA 53556 Prediction 0.2202 dbo RAID02042556 dme-miR-315-5p miRNA MIMAT0000407 dbo mRNA 53556 Prediction 0.2202 dbo RAID02058301 dme-miR-124-3p miRNA MIMAT0000351 dbo mRNA 53556 Prediction 0.1828 dbo RAID02138542 dme-miR-277-3p miRNA MIMAT0000338 dbo mRNA 53556 Prediction 0.2455 dbo RAID02245240 dme-miR-1011-3p miRNA MIMAT0005024 dbo mRNA 53556 Prediction 0.1828 dbo RAID02344481 dme-miR-985-3p miRNA MIMAT0005502 dbo mRNA 53556 Prediction 0.1828 dbo RAID02460736 dme-miR-314-3p miRNA MIMAT0000406 dbo mRNA 53556 Prediction 0.2202 dbo RAID02498082 dme-miR-10-3p miRNA MIMAT0012531 dbo mRNA 53556 Prediction 0.1828 dbo RAID02882398 dme-miR-313-3p miRNA MIMAT0000405 dbo mRNA 53556 Prediction 0.2202 dbo RAID03301468 dme-miR-312-3p miRNA MIMAT0000404 dbo mRNA 53556 Prediction 0.2202 dbo RAID03408619 dme-miR-305-5p miRNA MIMAT0000391 dbo mRNA 53556 Prediction 0.1828 dbo RAID03721715 dme-miR-311-3p miRNA MIMAT0000403 dbo mRNA 53556 Prediction 0.2202