DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 31037 CG3711 uggucauggacuacaUUAUGAGu ||||||| uucacgcauucugcaAAUACUCu 2 9 363 385 [dm3:X:818484-818506:-] 0.7568 140 7 -12.52 -0.7632 MIMAT0000336 dme-miR-276* 31037 CG3711 gcAUC-CUUGAGAUAUGGAGCGAc |:| ||: |:| | ||||||| auUGGAGAGAUUUCUCCCUCGCUu 2 22 224 247 [dm3:X:818622-818645:-] 0.7568 160 7 -19.04 -0.4745 MIMAT0000343 dme-miR-280 31037 CG3711 auaguaaaGUAUACGUUGCAUUUA-UGu |: ||| | | ||||| || uuaaggacCGAAUGGACCUUAAAUCACg 2 20 579 606 [dm3:X:817641-817668:-] 0.5422 123 0 -12.21 -0.5965 MIMAT0000343 dme-miR-280 31037 CG3711 auaguaaaGUAUACGUUGCAUUUA-UGu |: ||| | | ||||| || uuaaggacCGAAUGGACCUUAAAUCACg 2 20 1201 1228 [dm3:X:817641-817668:-] 0.5422 123 0 -12.21 -0.4647 MIMAT0005502 dme-miR-985 31037 CG3711 acgGGCUGGUAACCUUGUAAAc |||| ::| ||||||| aaaCCGAAUGUCUAAACAUUUc 2 20 737 758 [dm3:X:817436-817457:-] 0.5322 155 7 -11.80 -0.8687 MIMAT0005502 dme-miR-985 31037 CG3711 acgggcUGGUAACCUUGUAAAc |: || ||||||| cauuucAUAAUACUAACAUUUg 2 17 753 774 [dm3:X:817420-817441:-] 0.5222 144 7 -9.14 -0.5355 MIMAT0005502 dme-miR-985 31037 CG3711 acgGGCUGGUAACCUUGUAAAc |||| ::| ||||||| aaaCCGAAUGUCUAAACAUUUc 2 20 1359 1380 [dm3:X:817436-817457:-] 0.5322 155 7 -11.80 -0.7339 MIMAT0005502 dme-miR-985 31037 CG3711 acgggcUGGUAACCUUGUAAAc |: || ||||||| cauuucAUAAUACUAACAUUUg 2 17 1375 1396 [dm3:X:817420-817441:-] 0.5222 144 7 -9.14 -0.4100 MIMAT0011784 dme-miR-2279* 31037 CG3711 uuAAAGUGUGUGUCUAUAAAUu |||:| |: |:|||||| cgUUUUA---AUUGGUAUUUAa 2 21 899 917 [dm3:X:817277-817295:-] 0.5802 136 6 -8.73 -0.2618 MIMAT0011784 dme-miR-2279* 31037 CG3711 uuAAAGUGUGUGUCUAUAAAUu |||:| |: |:|||||| cgUUUUA---AUUGGUAUUUAa 2 21 1521 1539 [dm3:X:817277-817295:-] 0.5802 136 6 -8.73 -0.1861 MIMAT0011786 dme-miR-2280 31037 CG3711 uaUAAAAUAACGGUUCGAUUCu || |||| |||||||| gaAUGUUAU----AAGCUAAGg 2 21 952 969 [dm3:X:817225-817242:-] 0.5102 151 7 -13.93 -0.9388 MIMAT0011786 dme-miR-2280 31037 CG3711 uaUAAAAUAACGGUUCGAUUCu || |||| |||||||| gaAUGUUAU----AAGCUAAGg 2 21 1574 1591 [dm3:X:817225-817242:-] 0.5102 151 7 -13.93 -0.8108 MIMAT0011788 dme-miR-2281* 31037 CG3711 aacGUAGACGUCGACGUCU-AUUa |||:|| | |||||| ||| uaaCAUUUGGA-AUGCAGACUAAc 2 21 766 788 [dm3:X:817406-817428:-] 0.5222 130 0 -15.31 -0.7503 MIMAT0011788 dme-miR-2281* 31037 CG3711 aacGUAGACGUCGACGUCU-AUUa |||:|| | |||||| ||| uaaCAUUUGGA-AUGCAGACUAAc 2 21 1388 1410 [dm3:X:817406-817428:-] 0.5222 130 0 -15.31 -0.6114 MIMAT0011789 dme-miR-2281 31037 CG3711 cgUUAUGACGUCUAUGUCUAu ||||: || |||||||| ucAAUAU--CA-AUACAGAUa 2 20 600 617 [dm3:X:818252-818269:-] 0.7776 154 7 -15.52 -1.1791 MIMAT0012194 dme-miR-307-as* 31037 CG3711 ggUAGUGUUGGAGGAACUCACu | || : | |:||||||| ccAGCAGGCGCGCUUUGAGUGa 2 21 294 315 [dm3:X:817932-817953:-] 0.5422 152 7 -22.49 -0.4986 MIMAT0012194 dme-miR-307-as* 31037 CG3711 ggUAGUGUUGGAGGAACUCACu | || : | |:||||||| ccAGCAGGCGCGCUUUGAGUGa 2 21 916 937 [dm3:X:817932-817953:-] 0.5422 152 7 -22.49 -0.3699 MIMAT0012215 dme-miR-2500 31037 CG3711 gaCUCC-AGG--UGU-GUGUUU-UAGg |||| |:| ||| |||||| ||| ugGAGGCUUCAGACAUCACAAAGAUCu 2 21 426 452 [dm3:X:818417-818443:-] 0.7568 129 0 -19.28 -0.7897 MIMAT0000112 dme-miR-7 31037 CG3711 uguuGUUUUA-GUGAUCAGAAGGu |:||:| |: :||||||| ucucCGAAGUCCGAGGGUCUUCCc 2 20 817 840 [dm3:X:817354-817377:-] 0.5512 154 7 -20.13 -0.2183 MIMAT0000112 dme-miR-7 31037 CG3711 uguuGUUUUA-GUGAUCAGAAGGu |:||:| |: :||||||| ucucCGAAGUCCGAGGGUCUUCCc 2 20 1439 1462 [dm3:X:817354-817377:-] 0.5512 154 7 -20.13 -0.1534 MIMAT0000113 dme-miR-8 31037 CG3711 cuGUAGAAAUG-GACUGUCAUAAu | ||| ||: | ||||||| acCCUCUAUAUGCACUCAGUAUUa 2 22 360 383 [dm3:X:817864-817887:-] 0.5422 152 7 -10.88 -0.9555 MIMAT0000113 dme-miR-8 31037 CG3711 cuGUAGAAAUG-GACUGUCAUAAu | ||| ||: | ||||||| acCCUCUAUAUGCACUCAGUAUUa 2 22 982 1005 [dm3:X:817864-817887:-] 0.5422 152 7 -10.88 -0.8236 MIMAT0000319 dme-miR-263a 31037 CG3711 cacuuaagaaggucacGGUAAUUg ||||||| guuauaagcuaaggaaCCAUUAAa 2 9 956 979 [dm3:X:817215-817238:-] 0.5102 140 7 -9.82 -1.0118 MIMAT0000319 dme-miR-263a 31037 CG3711 cacuuaagaaggucacGGUAAUUg ||||||| guuauaagcuaaggaaCCAUUAAa 2 9 1578 1601 [dm3:X:817215-817238:-] 0.5102 140 7 -9.82 -0.8945 MIMAT0000332 dme-miR-274 31037 CG3711 uaaUG-GGCAAUCACAGCC---AGUGUUUu || |:| :| || | ||||||| cagACGCUGGAGGCUUCAGACAUCACAAAg 2 24 419 448 [dm3:X:818421-818450:-] 0.7568 141 7 -16.49 -0.8613 MIMAT0000342 dme-miR-33 31037 CG3711 guuacgcuGAUGUUACGUGGa | | |||||||| guauuaacCAAGAAUGCACCu 2 14 378 398 [dm3:X:817849-817869:-] 0.5422 149 7 -13.94 -0.6194 MIMAT0000342 dme-miR-33 31037 CG3711 guuacgcuGAUGUUACGUGGa | | |||||||| guauuaacCAAGAAUGCACCu 2 14 1000 1020 [dm3:X:817849-817869:-] 0.5422 149 7 -13.94 -0.4806 MIMAT0000351 dme-miR-124 31037 CG3711 gaACCGUAAGU--GGCGCACGGAAu ||| : ||: |:|:||||||| uuUGGAGAUCGAUCUGUGUGCCUUu 2 22 46 70 [dm3:X:818919-818943:-] 0.7357 160 7 -26.41 -0.6488 MIMAT0000356 dme-miR-285 31037 CG3711 cgugacuaaagcUUACCACGAu | ||||||| ----------aaACUGGUGCUg 2 11 1 12 [dm3:X:818235-818246:-] 0.7776 142 7 -11.83 -0.3747 MIMAT0000356 dme-miR-285 31037 CG3711 cgUGACUAAAG-CUU---ACCACGAu || ||| || ||| ||||||| auACAGAUAUCUGAAAACUGGUGCUg 2 21 609 634 [dm3:X:818235-818260:-] 0.7776 158 7 -19.22 -0.4329 MIMAT0000356 dme-miR-285 31037 CG3711 cgugacuaAAGCUUACCACGAu || | ||||||| cugcgacaUUAGCCUGGUGCUa 2 15 94 115 [dm3:X:818874-818895:-] 0.7357 146 7 -14.63 -0.7043 MIMAT0000361 dme-miR-87 31037 CG3711 guGUGGACUUUAAAACG-AGUu || :|||:|| |||| ||| ccCA-UUGAGAUAUUGCAUCAg 2 20 186 206 [dm3:X:818041-818061:-] 0.5130 129 0 -14.82 -0.5764 MIMAT0000361 dme-miR-87 31037 CG3711 guGUGGACUUUAAAACG-AGUu || :|||:|| |||| ||| ccCA-UUGAGAUAUUGCAUCAg 2 20 808 828 [dm3:X:818041-818061:-] 0.5130 129 0 -14.82 -0.4327 MIMAT0000365 dme-bantam 31037 CG3711 uuaguCGAAAGUUUUACUAG-AGu ||| ||||: ||||| || aguacGCUCUCAAGCUGAUCGUCa 2 19 465 488 [dm3:X:818381-818404:-] 0.7568 134 0 -18.28 -0.6622 MIMAT0000391 dme-miR-305 31037 CG3711 gucucguggacuacUUCAUGUUa |||||||| uuauacuaauacccAAGUACAAc 2 10 847 869 [dm3:X:817325-817347:-] 0.5802 145 7 -10.74 -0.6643 MIMAT0000391 dme-miR-305 31037 CG3711 gucucguggacuacUUCAUGUUa |||||||| uuauacuaauacccAAGUACAAc 2 10 1469 1491 [dm3:X:817325-817347:-] 0.5802 145 7 -10.74 -0.5277 MIMAT0005469 dme-miR-956 31037 CG3711 uuaCCUAAUCUCA----CCAGAGCUUu | |||:|: | |||||||| aucGUAUUGGGCUUCUCUGUCUCGAAa 2 21 417 443 [dm3:X:817804-817830:-] 0.5422 147 7 -16.83 -0.8725 MIMAT0005469 dme-miR-956 31037 CG3711 uuaCCUAAUCUCA----CCAGAGCUUu | |||:|: | |||||||| aucGUAUUGGGCUUCUCUGUCUCGAAa 2 21 1039 1065 [dm3:X:817804-817830:-] 0.5422 147 7 -16.83 -0.7349 MIMAT0005474 dme-miR-960 31037 CG3711 cgaUACGUUAGAC-CUUAUGAGu | ||| |||| ||||||| uucACGCAUUCUGCAAAUACUCu 2 20 363 385 [dm3:X:818484-818506:-] 0.7568 162 7 -15.10 -0.7559 MIMAT0005483 dme-miR-1002 31037 CG3711 agcGGGAAACAUAGG--UGA-UGAAUu | :|| | || | ||| ||||| uaaCAUUUGGAAUGCAGACUAACUUAu 2 22 766 792 [dm3:X:817402-817428:-] 0.5222 120 0 -8.70 -0.7078 MIMAT0005483 dme-miR-1002 31037 CG3711 agcGGGAAACAUAGG--UGA-UGAAUu | :|| | || | ||| ||||| uaaCAUUUGGAAUGCAGACUAACUUAu 2 22 1388 1414 [dm3:X:817402-817428:-] 0.5222 120 0 -8.70 -0.5695 MIMAT0005484 dme-miR-968 31037 CG3711 guUGGGAA-AUUACCUAUGA-UGAAu || :|| |||| | ||| |||| uaACAUUUGGAAUGCAGACUAACUUa 2 23 766 791 [dm3:X:817403-817428:-] 0.5222 129 0 -13.14 -1.0941 MIMAT0005484 dme-miR-968 31037 CG3711 guUGGGAA-AUUACCUAUGA-UGAAu || :|| |||| | ||| |||| uaACAUUUGGAAUGCAGACUAACUUa 2 23 1388 1413 [dm3:X:817403-817428:-] 0.5222 129 0 -13.14 -0.9939 MIMAT0005506 dme-miR-989 31037 CG3711 caaggugaugcagUGUAGUGu ||||||| cuggaggcuucagACAUCACa 2 9 425 445 [dm3:X:818424-818444:-] 0.7568 140 7 -12.88 -0.9510 MIMAT0005506 dme-miR-989 31037 CG3711 caaGGUGAUGCAGUGUAG-UGu |::||:|| :||||| || uccCUGCUGCGCUACAUCUACu 2 19 260 281 [dm3:X:818588-818609:-] 0.7568 130 0 -19.64 -0.3123 MIMAT0005514 dme-miR-995 31037 CG3711 uucggcuuaguacACCACGAu ||||||| ---------aaacUGGUGCUg 2 9 1 12 [dm3:X:818235-818246:-] 0.7776 140 7 -11.95 -0.3747 MIMAT0005514 dme-miR-995 31037 CG3711 uucgGCU-UAGU-ACACCACGAu ||| ||:| ||||||| ucugCGACAUUAGCCUGGUGCUa 2 18 93 115 [dm3:X:818874-818896:-] 0.7357 147 7 -18.85 -0.7080 MIMAT0005514 dme-miR-995 31037 CG3711 uucGGCUUAGUACACCACGAu |:||| | ||||||| uauCUGAA--AACUGGUGCUg 2 19 616 634 [dm3:X:818235-818253:-] 0.7776 147 7 -17.04 -0.4265 MIMAT0005518 dme-miR-998 31037 CG3711 cucgacuuagaguACCACGAu ||||||| ---------aaacUGGUGCUg 2 9 1 12 [dm3:X:818235-818246:-] 0.7776 140 7 -14.36 -0.3747 MIMAT0005518 dme-miR-998 31037 CG3711 cucGACUUAGAGUACCACGAu ||||| | ||||||| uauCUGAA-AAC-UGGUGCUg 2 19 616 634 [dm3:X:818235-818253:-] 0.7776 146 7 -18.36 -0.3991 MIMAT0005518 dme-miR-998 31037 CG3711 cucgacUUAGAGUACCACGAu | | | ||||||| ugcgacAUUAGCCUGGUGCUa 2 16 95 115 [dm3:X:818874-818894:-] 0.7357 143 7 -14.67 -0.7117

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG3711 RAID00015806 dme-miR-956-3p miRNA MIMAT0005469 CG3711 mRNA 31037 Prediction 0.2202 CG3711 RAID00217828 dme-miR-303-5p miRNA MIMAT0000388 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID00319978 dme-miR-989-3p miRNA MIMAT0005506 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID00383514 dme-miR-1002-5p miRNA MIMAT0005483 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID00614694 dme-miR-995-3p miRNA MIMAT0005514 CG3711 mRNA 31037 Prediction 0.2202 CG3711 RAID00743570 dme-miR-960-5p miRNA MIMAT0005474 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID00790414 dme-miR-87-3p miRNA MIMAT0000361 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID01277887 dme-miR-962-5p miRNA MIMAT0005476 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID01312331 dme-miR-33-5p miRNA MIMAT0000342 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID01401738 dme-miR-124-3p miRNA MIMAT0000351 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID01559053 dme-miR-125-5p miRNA MIMAT0000397 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID01586032 dme-miR-274-5p miRNA MIMAT0000332 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID02251137 dme-miR-285-3p miRNA MIMAT0000356 CG3711 mRNA 31037 Prediction 0.2202 CG3711 RAID02561148 dme-miR-7-5p miRNA MIMAT0000112 CG3711 mRNA 31037 Prediction 0.2202 CG3711 RAID02770660 dme-miR-305-5p miRNA MIMAT0000391 CG3711 mRNA 31037 Prediction 0.2202 CG3711 RAID02785020 dme-miR-4-3p miRNA MIMAT0000109 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID03319255 dme-miR-985-3p miRNA MIMAT0005502 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID03326049 dme-miR-263a-5p miRNA MIMAT0000319 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID03368613 dme-miR-8-3p miRNA MIMAT0000113 CG3711 mRNA 31037 Prediction 0.2202 CG3711 RAID03375121 dme-miR-968-5p miRNA MIMAT0005484 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID03471266 dme-bantam-3p miRNA MIMAT0000365 CG3711 mRNA 31037 Prediction 0.1828 CG3711 RAID03910337 dme-miR-998-3p miRNA MIMAT0005518 CG3711 mRNA 31037 Prediction 0.2202