DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 50253 CG12821 auAGUAAAG---UAUACGUUGCAUUU-AUGu |::|||| |||| |||: |||| ||| auUUGUUUCGCUAUAUACAAUAUAAAUUACc 2 26 1466 1496 [dm3:2R:3723549-3723579:+] 0.5634 144 0 -8.41 -1.2099 MIMAT0005491 dme-miR-975 50253 CG12821 uaUGUCCUACAUCCUUCACAAAu ||| | ||: ||||||||| uaACAUUAGGUGUGAAGUGUUUg 2 22 859 881 [dm3:2R:3722942-3722964:+] 0.5143 169 7 -18.79 -0.4019 MIMAT0005026 dme-miR-1013 50253 CG12821 gcucaagccguaUGAAAAUa ||||||| aaaauuaaaucgACUUUUAu 2 9 660 679 [dm3:2R:3722743-3722762:+] 0.6319 140 7 -7.78 -0.8294 MIMAT0005026 dme-miR-1013 50253 CG12821 gcucaagccguaUGAAAAUa ||||||| aaaauuaaaucgACUUUUAu 2 9 603 622 [dm3:2R:3722743-3722762:+] 0.6319 140 7 -7.78 -0.5850 MIMAT0011784 dme-miR-2279* 50253 CG12821 uuaaaGU-GUGUGUCUA-UAAAUu || ||||::||| ||||| cagcaCAUCACAUGGAUAAUUUAa 2 18 207 230 [dm3:2R:3722290-3722313:+] 0.4910 132 0 -14.83 -0.7778 MIMAT0011784 dme-miR-2279* 50253 CG12821 uuaAAG-UGUGUGUCUAUAA-AUu ||| | : ||| ||||| || cgaUUCGAAGGACACAUAUUAUAu 2 20 943 966 [dm3:2R:3723026-3723049:+] 0.5155 122 0 -8.15 -0.2658 MIMAT0011784 dme-miR-2279* 50253 CG12821 uuaaaGU-GUGUGUCUA-UAAAUu || ||||::||| ||||| cagcaCAUCACAUGGAUAAUUUAa 2 18 150 173 [dm3:2R:3722290-3722313:+] 0.4910 132 0 -14.83 -0.9597 MIMAT0012196 dme-miR-2489 50253 CG12821 ugacguuuaUGUUGUAUGUUAu :| |:||||||| auuuguuucGCUAUAUACAAUa 2 14 1466 1487 [dm3:2R:3723549-3723570:+] 0.5634 149 7 -11.56 -1.2605 MIMAT0012202 dme-miR-2494* 50253 CG12821 aaGGGUUAGACCACGUGAAUg ||: || || ||||||| gaCCUUAU-UG--GCACUUAa 2 20 1304 1321 [dm3:2R:3723387-3723404:+] 0.4982 146 7 -14.13 -0.6681 MIMAT0012208 dme-miR-2497* 50253 CG12821 uuGUUGAUGUAAAACGU------UA-CGAAUg ||||||| || ||| || ||||| uuCAACUAC-UUAGGCAUUAUUUAUCGCUUAa 2 24 309 339 [dm3:2R:3722392-3722422:+] 0.5158 120 0 -15.84 -0.7755 MIMAT0012208 dme-miR-2497* 50253 CG12821 uuGUUGAUGUAAAACGU------UA-CGAAUg ||||||| || ||| || ||||| uuCAACUAC-UUAGGCAUUAUUUAUCGCUUAa 2 24 252 282 [dm3:2R:3722392-3722422:+] 0.5158 120 0 -15.84 -0.9577 MIMAT0012209 dme-miR-2497 50253 CG12821 gacguuUGUAACAUUUACAAca :||||| ||||||| ggaaucGCAUUGAAAAUGUUua 3 17 576 597 [dm3:2R:3722716-3722737:+] 0.6319 148 0 -11.05 -0.1325 MIMAT0012215 dme-miR-2500 50253 CG12821 gacUCCAGGUGUGUGUUUUAGg | ||::|: ::||||||: aaaAUGUUUAUUUGCAAAAUUa 2 20 588 609 [dm3:2R:3722728-3722749:+] 0.6319 143 0 -10.13 -0.1927 MIMAT0000105 dme-miR-1 50253 CG12821 gagGUAU-GAAGAAAUGUAAGGu :||| | || ||||||| gagUAUAUCCAAUUAACAUUCCa 2 20 970 992 [dm3:2R:3723053-3723075:+] 0.4921 150 7 -14.45 -1.0078 MIMAT0000109 dme-miR-4 50253 CG12821 aguUACCAA-CAGA--------UCGAAAUa |||||| |||| ||||||| acuAUGGUUAGUCUUCGAAGUAAGCUUUAa 2 19 887 916 [dm3:2R:3722970-3722999:+] 0.5143 144 7 -17.55 -1.0415 MIMAT0000114 dme-miR-9a 50253 CG12821 agUAUGUCG-AUCUAUUGGUUUcu ||||| : || || |||||| auAUACAAUAUAAAUUACCAAAaa 3 22 1478 1501 [dm3:2R:3723561-3723584:+] 0.5634 148 0 -11.33 -0.5175 MIMAT0012531 dme-miR-10-3p 50253 CG12821 uuuggagagaucuuGGCUUAAAc ::|||||| -------------uUUGAAUUUa 2 10 1 10 [dm3:2R:3722084-3722093:+] 0.6688 125 6 -4.45 -0.1042 MIMAT0012531 dme-miR-10-3p 50253 CG12821 uuuggagagaucuuGGCUUAAAc ::|||||| -------------uUUGAAUUUa 2 10 1 10 [dm3:2R:3722084-3722093:+] 0.6688 125 6 -4.45 -0.1610 MIMAT0012531 dme-miR-10-3p 50253 CG12821 uuuggagaGAUCUUGGCUUAAAc :|| ||:||| ||| uugcaaaaUUA-AAUCGACUUUu 2 16 599 620 [dm3:2R:3722739-3722760:+] 0.6319 121 0 -6.21 -0.1071 MIMAT0000338 dme-miR-277 50253 CG12821 acagcauggucuaucACGUAAAu ||||||| ugagccgcuuugcuuUGCAUUUu 2 9 489 511 [dm3:2R:3722572-3722594:+] 0.5158 140 7 -9.85 -0.7412 MIMAT0000338 dme-miR-277 50253 CG12821 acagcauggucuaucACGUAAAu ||||||| ugagccgcuuugcuuUGCAUUUu 2 9 432 454 [dm3:2R:3722572-3722594:+] 0.5158 140 7 -9.85 -0.9343 MIMAT0000342 dme-miR-33 50253 CG12821 guuACGCUGAUGU-UACGUGGa | || :|| | |||||| aauUUCGUUUAAAGCUGCACCa 2 19 1413 1434 [dm3:2R:3723496-3723517:+] 0.5634 121 6 -12.45 -0.1332 MIMAT0000351 dme-miR-124 50253 CG12821 gaaccGUAAGUG-GCGCA-CGGAAu ::| ||| |||| ||||| uguacUGUACACAAGCGUGGCCUUg 2 19 463 487 [dm3:2R:3722546-3722570:+] 0.5158 121 0 -18.65 -0.1046 MIMAT0000351 dme-miR-124 50253 CG12821 gaaccGUAAGUG-GCGCA-CGGAAu ::| ||| |||| ||||| uguacUGUACACAAGCGUGGCCUUg 2 19 406 430 [dm3:2R:3722546-3722570:+] 0.5158 121 0 -18.65 -0.1788 MIMAT0000356 dme-miR-285 50253 CG12821 cguGACUAAAGCUUACCACGAu :||| ||: | ||||| | --uUUGAAUUU-AUUGGUGGUu 2 20 1 19 [dm3:2R:3722084-3722102:+] 0.6688 125 0 -9.88 -0.1014 MIMAT0000392 dme-miR-9c 50253 CG12821 agAUGUCG-AUCUUAUGGUUUcu |||| : || | ||||||| uaUACAAUAUAAAUUACCAAAaa 3 21 1479 1501 [dm3:2R:3723562-3723584:+] 0.5634 143 0 -8.58 -0.5175 MIMAT0000395 dme-miR-9b 50253 CG12821 guAUGUCGAUUUUAGUGGUUUcu |||| : ||||:|||||| uaUACAAUAUAAAUUACCAAAaa 3 22 1479 1501 [dm3:2R:3723562-3723584:+] 0.5634 153 0 -15.52 -0.5105 MIMAT0000409 dme-miR-317 50253 CG12821 ugaccUAUGGUGGUCGACACAAGu || :|| :| ||||||| gugucAUCUCAAUAUAUGUGUUCa 2 20 1382 1405 [dm3:2R:3723465-3723488:+] 0.5634 155 7 -17.76 -1.2481 MIMAT0000412 dme-miR-iab-4-5p 50253 CG12821 aguccuaUGUAA---GU-CAUAUGCa ||||| || ||||||| cgauuuaACAUUAGACAGGUAUACGc 2 16 426 451 [dm3:2R:3722509-3722534:+] 0.5158 149 7 -14.24 -0.3358 MIMAT0000412 dme-miR-iab-4-5p 50253 CG12821 aguccUAUGUAAG-UCAUAUGCa | |:|| | | |||||| aacaaACAUAUACGACUAUACGa 2 18 1320 1342 [dm3:2R:3723403-3723425:+] 0.5634 124 6 -9.41 -0.1410 MIMAT0000412 dme-miR-iab-4-5p 50253 CG12821 aguccuaUGUAA---GU-CAUAUGCa ||||| || ||||||| cgauuuaACAUUAGACAGGUAUACGc 2 16 369 394 [dm3:2R:3722509-3722534:+] 0.5158 149 7 -14.24 -0.5061 MIMAT0005471 dme-miR-958 50253 CG12821 uuuCAUCUUAUC--UUCU-UAGAGu | | |||:| |:|| ||||| cucGGAAAAUGGCUAGGAUAUCUCg 2 20 824 848 [dm3:2R:3722907-3722931:+] 0.5143 122 0 -11.77 -0.1140 MIMAT0005480 dme-miR-965 50253 CG12821 uuccccUUUUCGAUAUGCGAAu :| || ||||||||| acauuaGACAGGUAUACGCUUa 2 17 433 454 [dm3:2R:3722516-3722537:+] 0.5158 160 7 -16.40 -0.7738 MIMAT0005480 dme-miR-965 50253 CG12821 uuccccUUUUCGAUAUGCGAAu :| || ||||||||| acauuaGACAGGUAUACGCUUa 2 17 376 397 [dm3:2R:3722516-3722537:+] 0.5158 160 7 -16.40 -0.9598 MIMAT0005483 dme-miR-1002 50253 CG12821 agcgGGAAACAUAGG---UGAUGAAUu |:|| |||:| |||||||| uaagCUUUAAUAUUCCGAACUACUUAg 2 21 907 933 [dm3:2R:3722990-3723016:+] 0.5149 159 7 -17.68 -0.1734 MIMAT0005483 dme-miR-1002 50253 CG12821 agcgggaaacauAGGUGAUGAAUu || |||||||| uagugaauacauUCAACUACUUAg 2 13 298 321 [dm3:2R:3722381-3722404:+] 0.5034 152 7 -13.08 -0.4115 MIMAT0005483 dme-miR-1002 50253 CG12821 agcgggaaacauAGGUGAUGAAUu || |||||||| uagugaauacauUCAACUACUUAg 2 13 241 264 [dm3:2R:3722381-3722404:+] 0.5034 152 7 -13.08 -0.5939 MIMAT0005484 dme-miR-968 50253 CG12821 guuggGAAAUUA----CCUAUGAUGAAu ||||||| || ||||||| guaagCUUUAAUAUUCCGA-ACUACUUa 2 20 906 932 [dm3:2R:3722989-3723015:+] 0.5149 152 7 -14.06 -0.3617 MIMAT0005484 dme-miR-968 50253 CG12821 guugggaAAUUACCUA---UGAUGAAu | ||| || ||||||| cgcuuagUGAAUACAUUCAACUACUUa 2 18 294 320 [dm3:2R:3722377-3722403:+] 0.5034 144 7 -12.92 -0.7344 MIMAT0005484 dme-miR-968 50253 CG12821 guugggaAAUUACCUA---UGAUGAAu | ||| || ||||||| cgcuuagUGAAUACAUUCAACUACUUa 2 18 237 263 [dm3:2R:3722377-3722403:+] 0.5034 144 7 -12.92 -0.9220 MIMAT0005503 dme-miR-986 50253 CG12821 agUCAGUGU-UGCGAUAA-GCUCu :| |||| |: |||| |||| aaGGACACAUAUUAUAUUGCGAGu 2 21 950 973 [dm3:2R:3723033-3723056:+] 0.5155 123 0 -13.76 -0.9171 MIMAT0005504 dme-miR-987 50253 CG12821 guagUUAGGUCUGAUAAA-UGAAAu | | : |:: |||| ||||| caagAUUAUUGGUGAUUUCACUUUa 2 21 1110 1134 [dm3:2R:3723193-3723217:+] 0.4330 120 0 -9.74 -0.3354 MIMAT0005506 dme-miR-989 50253 CG12821 caaGGUGAUGCAGUGUAGUGu |:: :| |||||||| cacCUGAAGCAGCACAUCACa 2 19 198 218 [dm3:2R:3722281-3722301:+] 0.4910 146 7 -18.46 -0.3721 MIMAT0005506 dme-miR-989 50253 CG12821 caaGGUGAUGCAGUGUAGUGu |:: :| |||||||| cacCUGAAGCAGCACAUCACa 2 19 141 161 [dm3:2R:3722281-3722301:+] 0.4910 146 7 -18.46 -0.5470 MIMAT0005518 dme-miR-998 50253 CG12821 cucGACUUAGAGUACCACGAu :|||||:| ||||| | --uUUGAAUUUAUUGGUGGUu 2 19 1 19 [dm3:2R:3722084-3722102:+] 0.6688 134 0 -14.97 -0.1004 MIMAT0005519 dme-miR-999 50253 CG12821 ucUGUGUC-A--GAAUGUCAAUUgu |||::| | :||| |||||| ucACAUGGAUAAUUUA-AGUUAAaa 3 21 214 237 [dm3:2R:3722297-3722320:+] 0.4910 132 0 -8.66 -0.1123 MIMAT0005519 dme-miR-999 50253 CG12821 ucUGUGUC-A--GAAUGUCAAUUgu |||::| | :||| |||||| ucACAUGGAUAAUUUA-AGUUAAaa 3 21 157 180 [dm3:2R:3722297-3722320:+] 0.4910 132 0 -8.66 -0.1882 MIMAT0005019 dme-miR-1006 50253 CG12821 gauacuuauucuuuAGCUUAAAu |:|||||| -------------uUUGAAUUUa 2 10 1 10 [dm3:2R:3722084-3722093:+] 0.6688 129 6 -6.34 -0.1042 MIMAT0005019 dme-miR-1006 50253 CG12821 gauAC-UUAUUCUUUAGCUUAAAu || || | ||||||| ||| auuUGCAAAAUUAAAUCGACUUUu 2 21 597 620 [dm3:2R:3722737-3722760:+] 0.6319 135 0 -7.13 -0.1049 MIMAT0005019 dme-miR-1006 50253 CG12821 gauacuuauucuuuAGCUUAAAu |:|||||| -------------uUUGAAUUUa 2 10 1 10 [dm3:2R:3722084-3722093:+] 0.6688 129 6 -6.34 -0.1610 MIMAT0005027 dme-miR-1014 50253 CG12821 gacguuuacuuuuACUUAAAa ||||||| -----------uuUGAAUUUa 2 9 1 10 [dm3:2R:3722084-3722093:+] 0.6688 140 7 -3.11 -1.1491 MIMAT0005027 dme-miR-1014 50253 CG12821 gacguuuacuuuuACUUAAAa ||||||| -----------uuUGAAUUUa 2 9 1 10 [dm3:2R:3722084-3722093:+] 0.6688 140 7 -3.11 -1.2180

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Atg10 RAID00073972 dme-miR-311-3p miRNA MIMAT0000403 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID00301189 dme-miR-124-3p miRNA MIMAT0000351 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID00425734 dme-miR-33-5p miRNA MIMAT0000342 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID00482713 dme-miR-972-3p miRNA MIMAT0005488 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID00498270 dme-miR-313-3p miRNA MIMAT0000405 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID00561181 dme-miR-92b-3p miRNA MIMAT0000358 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID00723129 dme-miR-285-3p miRNA MIMAT0000356 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID00795291 dme-miR-968-5p miRNA MIMAT0005484 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID00990059 dme-mir-281-1 miRNA MI0000366 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID01159255 dme-miR-986-5p miRNA MIMAT0005503 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID01180687 dme-miR-1002-5p miRNA MIMAT0005483 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID01303976 dme-miR-965-3p miRNA MIMAT0005480 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID01325595 dme-miR-317-3p miRNA MIMAT0000409 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID01350000 dme-miR-9a-5p miRNA MIMAT0000114 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID01796079 dme-mir-iab-4 miRNA MI0000432 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID01895346 dme-miR-310-3p miRNA MIMAT0000402 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID01902742 dme-miR-1014-3p miRNA MIMAT0005027 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID02023729 dme-miR-1006-3p miRNA MIMAT0005019 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID02116671 dme-miR-999-3p miRNA MIMAT0005519 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID02168727 dme-miR-4-3p miRNA MIMAT0000109 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID02236569 dme-miR-958-3p miRNA MIMAT0005471 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID02269220 dme-miR-284-3p miRNA MIMAT0000348 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID02313554 dme-miR-312-3p miRNA MIMAT0000404 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID02441173 dme-miR-277-3p miRNA MIMAT0000338 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID02468584 dme-miR-975-5p miRNA MIMAT0005491 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID02585097 dme-miR-9c-5p miRNA MIMAT0000392 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID02760294 dme-miR-977-3p miRNA MIMAT0005493 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID02881703 dme-miR-1-3p miRNA MIMAT0000105 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID02948288 dme-miR-962-5p miRNA MIMAT0005476 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID02969030 dme-miR-79-3p miRNA MIMAT0000352 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID03277121 dme-miR-9b-5p miRNA MIMAT0000395 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID03334294 dme-miR-92a-3p miRNA MIMAT0000334 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID03359307 dme-miR-10-3p miRNA MIMAT0012531 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID03367317 dme-miR-987-5p miRNA MIMAT0005504 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID03638325 dme-miR-263a-5p miRNA MIMAT0000319 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID03660132 dme-miR-989-3p miRNA MIMAT0005506 Atg10 mRNA 50253 Prediction 0.2202 Atg10 RAID03696168 dme-miR-1013-3p miRNA MIMAT0005026 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID03722077 dme-miR-1017-3p miRNA MIMAT0005030 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID03910713 dme-miR-998-3p miRNA MIMAT0005518 Atg10 mRNA 50253 Prediction 0.1828 Atg10 RAID04047278 dme-miR-iab-4-5p miRNA MIMAT0000412 Atg10 mRNA 50253 Prediction 0.1828