DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 53433 Vhl ugGUCAUGGACUACAUUAUGAGu || ||: || | ||||||| uaCA-UAUAUG-CGCAAUACUCu 2 22 287 307 [dm3:2R:7168206-7168226:+] 0.5825 149 7 -9.47 -0.5254 MIMAT0000364 dme-miR-289 53433 Vhl ucAGCGU-CCGAGGUGAAUUUAUAAAu |:||| | |:: : |: |||||| caUUGCAUUGAUUUUUCUGUAUAUUUa 2 25 178 204 [dm3:2R:7168097-7168123:+] 0.5825 127 6 -10.69 -0.1307 MIMAT0000364 dme-miR-289 53433 Vhl ucagcguccgaggugaauuUAUAAAu |||||| aagucugaaucugaaguacAUAUUUa 2 8 405 430 [dm3:2R:7168324-7168349:+] 0.5050 120 6 -9.79 -0.1164 MIMAT0000388 dme-miR-303 53433 Vhl uggucaaAGGACA-CUUUGGAUUu |: ||| |||||||| uaaauaaUUAUGUAUAAACCUAAu 2 17 236 259 [dm3:2R:7168155-7168178:+] 0.5825 151 7 -10.59 -1.1850 MIMAT0005464 dme-miR-iab-4as-3p 53433 Vhl auuUGCA--UAUGACUUACAUAgg |:|| ||| | |||||| ucuAUGUAAAUAAU-UAUGUAUaa 3 20 230 252 [dm3:2R:7168149-7168171:+] 0.5825 128 0 -7.61 -0.2029 MIMAT0005509 dme-miR-991 53433 Vhl ugAAAGGUUU----GA-UGUUGAAAUu |||||||| :| |:||||||| gaUUUCCAAAUAAUUUAAUAACUUUAa 2 21 65 91 [dm3:2R:7167984-7168010:+] 0.6107 162 7 -16.53 -1.3105 MIMAT0005509 dme-miR-991 53433 Vhl ugaAAGGUUUGAUGUUGAA-AUu || |||| | |||||| || auaUUGCAAAAU-CAACUUAUAa 2 20 578 599 [dm3:2R:7168497-7168518:+] 0.4930 129 0 -10.24 -1.2610 MIMAT0005026 dme-miR-1013 53433 Vhl gcUCAAGCCGUAUGAAAAUa | | |||:: ||||||| guACUCCGGUGCACUUUUAa 2 19 458 477 [dm3:2R:7168377-7168396:+] 0.5050 158 7 -13.38 -0.6103 MIMAT0011784 dme-miR-2279* 53433 Vhl uuaaAGUGUGUGUCUAUAAAUu || | ::| ||||||| ugaaUCUGAAGUACAUAUUUAu 2 19 410 431 [dm3:2R:7168329-7168350:+] 0.5050 150 7 -4.92 -0.5922 MIMAT0011784 dme-miR-2279* 53433 Vhl uuaaagugugugucUAUAAAUu ||||||| auugauuuuucuguAUAUUUAa 2 9 184 205 [dm3:2R:7168103-7168124:+] 0.5825 140 7 -4.90 -1.1824 MIMAT0011787 dme-miR-2280* 53433 Vhl agucaAUCGAACCUUCAUUUAa || || | |||||| cuaugUAUGUUCUAUGUAAAUa 2 18 220 241 [dm3:2R:7168139-7168160:+] 0.5825 121 6 -2.93 -0.3491 MIMAT0011789 dme-miR-2281 53433 Vhl cguuAUGACGUCUAUGUCUAu || || :||||||| aaguUAACGCUCGUACAGAUu 2 18 483 503 [dm3:2R:7168402-7168422:+] 0.4906 149 7 -13.22 -0.2087 MIMAT0011789 dme-miR-2281 53433 Vhl cguuaugacgucuaUGUCUAu |||||| uuucuguauauuuaACAGAUu 2 8 191 211 [dm3:2R:7168110-7168130:+] 0.5825 120 6 -10.98 -0.1462 MIMAT0012197 dme-miR-2490 53433 Vhl aacGUUGGACGAAA---U---AGCGAAgu || |||| ||| | |||||| uucCAUCCUGGUUUUCGAUUUUCGCUUau 3 21 97 125 [dm3:2R:7168016-7168044:+] 0.5825 130 0 -16.45 -0.1176 MIMAT0012200 dme-miR-2493* 53433 Vhl accgacacacacaCACACUcg |||||| uaaugugaaacaaGUGUGAau 3 9 256 276 [dm3:2R:7168175-7168195:+] 0.5825 120 0 -10.56 -0.1103 MIMAT0012208 dme-miR-2497* 53433 Vhl uuGUUGAUG-UAAAACGUUACGAAUg ||::||| ||||||||||||| ugCAGUUACUCCUUUGCAAUGCUUAu 2 24 351 376 [dm3:2R:7168270-7168295:+] 0.5438 182 7 -26.46 -0.4780 MIMAT0012210 dme-miR-2498* 53433 Vhl guUUUUAUU---CGUAUUGUCG-GAAAu ||| |:: |||||: ||| |||| acAAAUUGGCUUGCAUAG-AGCUCUUUa 2 23 135 161 [dm3:2R:7168054-7168080:+] 0.5825 123 0 -15.85 -0.9376 MIMAT0012215 dme-miR-2500 53433 Vhl gacuccagGUGU-GUGUUUUAGg :|:| ::||||||| aacucaaaUAUAUUGCAAAAUCa 2 15 569 591 [dm3:2R:7168488-7168510:+] 0.4930 145 7 -8.73 -1.1338 MIMAT0012216 dme-miR-2501 53433 Vhl aaucggguccgugagguUUGAAUg |||||| aaauauauugcaaaaucAACUUAu 2 8 574 597 [dm3:2R:7168493-7168516:+] 0.4930 120 6 -8.63 -0.2197 MIMAT0012217 dme-miR-2501* 53433 Vhl uuUCUUUCAAACUAACGU-UCUCa | ||| || | ||||| |||| guACAAA-UUGGCUUGCAUAGAGc 2 22 133 155 [dm3:2R:7168052-7168074:+] 0.5825 131 0 -12.41 -0.5234 MIMAT0000338 dme-miR-277 53433 Vhl acagcAUGGUCUAUCACGUAAau |||:| | |||||| ugggcUACUA-CCAUUGCAUUga 3 19 167 188 [dm3:2R:7168086-7168107:+] 0.5825 128 0 -9.14 -0.1841 MIMAT0000347 dme-miR-283 53433 Vhl ucuuaauggucgacUAUAAAu |||||| auugauuuuucuguAUAUUUa 2 8 184 204 [dm3:2R:7168103-7168123:+] 0.5825 120 6 -7.82 -0.1281 MIMAT0000347 dme-miR-283 53433 Vhl ucuuaauggucgacUAUAAAu |||||| ugaaucugaaguacAUAUUUa 2 8 410 430 [dm3:2R:7168329-7168349:+] 0.5050 120 6 -7.13 -0.1187 MIMAT0000391 dme-miR-305 53433 Vhl gucucgUGGACU---ACUUCAUGUua ::|||| ||||||||| uuauaaGUCUGAAUCUGAAGUACAua 3 18 401 426 [dm3:2R:7168320-7168345:+] 0.5050 140 0 -16.93 -0.1354 MIMAT0000391 dme-miR-305 53433 Vhl gucucguggacuacuuCAUGUUa |||||| uucgcuuauuacuuauGUACAAa 2 8 117 139 [dm3:2R:7168036-7168058:+] 0.5825 120 6 -8.49 -0.1643 MIMAT0000407 dme-miR-315 53433 Vhl cgaaagacuCGUUGUUAGUUuu |||| |||||| aaauauauuGCAA-AAUCAAcu 3 14 574 594 [dm3:2R:7168493-7168513:+] 0.4930 131 0 -5.96 -0.1479 MIMAT0000413 dme-miR-iab-4-3p 53433 Vhl caaugcauaugacuuccAUAUGGc |||||| auauuuaacagauuucuUAUACCu 2 8 198 221 [dm3:2R:7168117-7168140:+] 0.5825 120 6 -6.54 -0.1157 MIMAT0005474 dme-miR-960 53433 Vhl cgaUACGU-UAGAC-C-UUAUGAGu || || || || | ||||||| uacAUACAUAUAUGCGCAAUACUCu 2 20 283 307 [dm3:2R:7168202-7168226:+] 0.5825 152 7 -11.61 -0.5290 MIMAT0005477 dme-miR-963 53433 Vhl cuuUGUUGGACUAUA-AAUGG-AACa |||| :||: | |||| ||| uuuACAAGUUGGGCUACUACCAUUGc 2 22 158 183 [dm3:2R:7168077-7168102:+] 0.5825 120 0 -14.75 -0.9449 MIMAT0005477 dme-miR-963 53433 Vhl cuUUGUUGGACUAUAAAUGGA-ACa ||||: :| | | ||||| || uuAACAGAUUUCU-UAUACCUAUGu 2 23 202 225 [dm3:2R:7168121-7168144:+] 0.5825 120 0 -10.34 -1.2381 MIMAT0005486 dme-miR-970 53433 Vhl uaucggcgcacACAGAAUAcu | |||||| uauuuaacagaUUUCUUAUac 3 11 199 219 [dm3:2R:7168118-7168138:+] 0.5825 122 0 -2.23 -0.1022 MIMAT0005504 dme-miR-987 53433 Vhl guAGUUAGGUCUGAUAAAUGAAAu || | :| :|| | ||||| uuUCCAAAUAAUUUAAUAACUUUa 2 23 67 90 [dm3:2R:7167986-7168009:+] 0.6107 122 0 -8.12 -0.1101 MIMAT0005507 dme-miR-137 53433 Vhl gaUGCACAUAAGAGUUCG--UUAu ||||||: || ||||| ||| cuACGUGUG-UCGCAAGCCUAAUu 2 21 377 399 [dm3:2R:7168296-7168318:+] 0.5050 122 0 -20.95 -0.6651 MIMAT0005511 dme-miR-929 53433 Vhl guuagacUGAG-GCAAUCCCUc | || : ||||||| ggcggguAAUCAUCUUAGGGAc 2 15 29 50 [dm3:2R:7167948-7167969:+] 0.5719 141 7 -12.76 -0.3157 MIMAT0005519 dme-miR-999 53433 Vhl ucugugucaGAAUGUCAAUUGu :||| ||||||| acuuuuaaaUUUAAAGUUAACg 2 14 470 491 [dm3:2R:7168389-7168410:+] 0.5050 153 7 -10.78 -0.7369 MIMAT0005016 dme-miR-1003 53433 Vhl gacACUUA-UACAUUUACACUcu || || | ||||||| uuaUGUAUAAACCUAAUGUGAaa 3 20 243 265 [dm3:2R:7168162-7168184:+] 0.5825 126 0 -8.63 -0.1731 MIMAT0005017 dme-miR-1004 53433 Vhl gacacucccuucACUACACUcu | |||||| uauguauaaaccUAAUGUGAaa 3 11 244 265 [dm3:2R:7168163-7168184:+] 0.5825 122 0 -5.25 -0.1781 MIMAT0005023 dme-miR-1010 53433 Vhl gacGUUUAC-CUUGCUAUC-CACUUu | |||| ||| | || ||||| aacCUAAUGUGAAACA-AGUGUGAAu 2 22 252 276 [dm3:2R:7168171-7168195:+] 0.5825 122 0 -10.56 -1.1055

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Vhl RAID00143031 dme-miR-375-3p miRNA MIMAT0005472 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID00309404 dme-miR-970-3p miRNA MIMAT0005486 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID00462954 dme-miR-1013-3p miRNA MIMAT0005026 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID00552851 dme-miR-987-5p miRNA MIMAT0005504 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID00642879 dme-miR-283-5p miRNA MIMAT0000347 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID00861283 dme-miR-963-5p miRNA MIMAT0005477 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID00881696 dme-miR-1004-3p miRNA MIMAT0005017 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID01126122 dme-miR-315-5p miRNA MIMAT0000407 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID01197533 dme-miR-929-3p miRNA MIMAT0005511 Vhl mRNA 53433 Prediction 0.2202 Vhl RAID01215035 dme-miR-277-3p miRNA MIMAT0000338 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID01320368 dme-miR-1003-3p miRNA MIMAT0005016 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID01510118 dme-miR-999-3p miRNA MIMAT0005519 Vhl mRNA 53433 Prediction 0.2202 Vhl RAID01626313 dme-miR-303-5p miRNA MIMAT0000388 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID01743325 dme-miR-1010-3p miRNA MIMAT0005023 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID02116609 dme-miR-960-5p miRNA MIMAT0005474 Vhl mRNA 53433 Prediction 0.2202 Vhl RAID02413872 dme-miR-iab-4-3p miRNA MIMAT0000413 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID02490775 dme-miR-305-5p miRNA MIMAT0000391 Vhl mRNA 53433 Prediction 0.2202 Vhl RAID02723799 dme-miR-137-3p miRNA MIMAT0005507 Vhl mRNA 53433 Prediction 0.1828 Vhl RAID03631473 dme-miR-991-3p miRNA MIMAT0005509 Vhl mRNA 53433 Prediction 0.1828