DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 32278 HDAC4 auaguaaagUAUACGUUG--CAUUUAUGu | | ||||| |||||| uaauaaaaaAAAAGCAACAAUAAAAUACa 2 19 1260 1288 [dm3:X:13157727-13157755:-] 0.4927 121 6 -11.32 -0.1249 MIMAT0005464 dme-miR-iab-4as-3p 32278 HDAC4 auuUGCAUAUGACUUACAUAGg ||| | ||| |||||||| cacACGCA-ACUCAAUGUAUCu 2 20 544 564 [dm3:X:13158451-13158471:-] 0.4545 165 7 -15.25 -0.6140 MIMAT0005509 dme-miR-991 32278 HDAC4 ugaaAG-GUUUGAUGUUGA-AAUu || |||| |::|||| ||| gaaaUCACAAA-UGUAACUAUUAa 2 19 1707 1729 [dm3:X:13157286-13157308:-] 0.5166 123 0 -9.59 -0.8889 MIMAT0005509 dme-miR-991 32278 HDAC4 ugaaagGUUUGAUGUUGA-AAUu ::|| || |||| ||| cugaaaUGAAGUAAAACUAUUAu 2 17 1198 1220 [dm3:X:13157795-13157817:-] 0.4794 120 0 -4.14 -0.9504 MIMAT0005510 dme-miR-992 32278 HDAC4 gaauCAUGGUC-UUUGCACAUGa |||:: | | ||||||| aacuGUAUUUGUACUCGUGUACc 2 19 1431 1453 [dm3:X:13157562-13157584:-] 0.4600 149 7 -14.35 -0.3385 MIMAT0005021 dme-miR-1008 32278 HDAC4 acaUUUGUGUUUUUCG-ACACu :::::|||:|||| |||| gucGGGUGCAAGAAGCAUGUGu 2 19 661 682 [dm3:X:13158333-13158354:-] 0.4453 130 0 -19.33 -0.3092 MIMAT0011784 dme-miR-2279* 32278 HDAC4 uuAAAGUGUG-UGUCUAU-AAAUu |||:::|| |: ||| |||| cuUUUUGUACAAUUUAUAGUUUAg 2 21 881 904 [dm3:X:13158111-13158134:-] 0.4782 123 0 -6.67 -0.5054 MIMAT0011787 dme-miR-2280* 32278 HDAC4 agucaaucgaaccuuCAUUUAa |||||| aaacuauuauuauauGUAAAUa 2 8 1211 1232 [dm3:X:13157783-13157804:-] 0.4794 120 6 -1.98 -0.1520 MIMAT0011790 dme-miR-2282 32278 HDAC4 uaAGAUAAAAAUCGAGUG-GCUa ||||| | | ||||| ||| caUCUAUCUCU--CUCACUCGAu 2 21 213 233 [dm3:X:13158782-13158802:-] 0.4500 125 0 -15.75 -0.2047 MIMAT0012196 dme-miR-2489 32278 HDAC4 ugACGUUUAUGU-UGUAUGUUau | :| |||:| |:|||||| uaUAUAUAUAUAUAUAUACAAaa 3 21 957 979 [dm3:X:13158036-13158058:-] 0.4563 143 0 -8.66 -0.1669 MIMAT0012198 dme-miR-2491 32278 HDAC4 ucgUUGACGUUUCCGUUGU-CGc |::| |||: ||||| || gcaAGUUUCAAGUACAACAUGCu 2 20 906 928 [dm3:X:13158087-13158109:-] 0.4782 123 0 -11.44 -0.7743 MIMAT0012199 dme-miR-2492 32278 HDAC4 aaAC-UUUCGAGAGCUGUUUUGUa || ||| | | |||||||| aaUGAAAAUCGCCACACAAAACAg 2 22 1010 1033 [dm3:X:13157982-13158005:-] 0.4471 156 7 -13.02 -0.3600 MIMAT0012199 dme-miR-2492 32278 HDAC4 aaacuuucGAGAGCUGUUUUGUa :|:|: ||||||| uuguuuuuUUUUUACCAAAACAc 2 16 2018 2040 [dm3:X:13156975-13156997:-] 0.4224 147 7 -7.86 -0.2300 MIMAT0012199 dme-miR-2492 32278 HDAC4 aaacuuucgAGAGCUGUUUUGUa | | |:|||||| auuauuauaUGUAAAUAAAACAc 2 15 1216 1238 [dm3:X:13157777-13157799:-] 0.4861 130 6 -5.09 -0.1196 MIMAT0012199 dme-miR-2492 32278 HDAC4 aaACUUUCGAGAGCUGUUU-UGUa | || || | | ||||| ||| uuUUAACGCACAC-ACAAACACAc 2 22 526 548 [dm3:X:13158467-13158489:-] 0.4545 123 0 -5.59 -0.1443 MIMAT0012201 dme-miR-2493 32278 HDAC4 ugcgGAGCGUGUUUAUGUGUGCc | | |||| | ||||||| uuaaCGCACACACAAACACACGc 2 20 528 550 [dm3:X:13158465-13158487:-] 0.4545 163 7 -23.72 -0.4111 MIMAT0012206 dme-miR-2496* 32278 HDAC4 augcuaccgGAGAGUGUGUGCGUg | | ||||||||| uaacgcacaCACAAACACACGCAa 2 16 529 552 [dm3:X:13158463-13158486:-] 0.4545 151 7 -19.72 -0.5840 MIMAT0012209 dme-miR-2497 32278 HDAC4 gaCGUUU--GUAAC-AUUUACAACa | ||| ::||| ||||||||| gaGAAAAUUUGUUGUUAAAUGUUGc 2 21 1050 1074 [dm3:X:13157941-13157965:-] 0.4623 162 7 -11.77 -0.3470 MIMAT0012214 dme-miR-2500* 32278 HDAC4 ccauaacauauacacacaAGGAAUg |||||| aacagaaacuaaaaacuaUCCUUAa 2 8 1674 1698 [dm3:X:13157317-13157341:-] 0.5126 120 6 -6.49 -0.1749 MIMAT0012215 dme-miR-2500 32278 HDAC4 gacuccaggUGUGUGUUUUAGg | |:|||||||| gcaacaauaAAAUACAAAAUCa 2 14 1273 1294 [dm3:X:13157721-13157742:-] 0.4927 153 7 -11.91 -1.1942 MIMAT0012216 dme-miR-2501 32278 HDAC4 aaucggguccgugaggUUUGAAUg ||||||| agauaugagaaaaaaaAAACUUAa 2 9 817 840 [dm3:X:13158175-13158198:-] 0.4108 140 7 -7.48 -0.9901 MIMAT0012531 dme-miR-10-3p 32278 HDAC4 uuuggAGAGAUCUUGGCUUAAAc | | || | ||||||| aggaaUAUAUAUAUACGAAUUUu 2 19 1870 1892 [dm3:X:13157123-13157145:-] 0.4056 150 7 -7.63 -0.6847 MIMAT0000332 dme-miR-274 32278 HDAC4 uaaugggcaaucacagccAGUGUUUu ||||||| ccuuaaaaaaaaaugaaaUCACAAAu 2 9 1693 1718 [dm3:X:13157297-13157322:-] 0.5166 140 7 -10.10 -0.9550 MIMAT0000332 dme-miR-274 32278 HDAC4 uaauggGCAAUCACAGCCAG-UGUUUu || || | :| || ||||| guguaaCGAUAACGAUGUUCAACAAAu 2 21 1169 1195 [dm3:X:13157820-13157846:-] 0.4794 120 0 -8.91 -0.3974 MIMAT0000332 dme-miR-274 32278 HDAC4 uaaugggcaaucacagccaGUGUUUu |||||| uuauuauauguaaauaaaaCACAAAa 2 8 1217 1242 [dm3:X:13157773-13157798:-] 0.4861 120 6 -12.45 -0.1888 MIMAT0000334 dme-miR-92a 32278 HDAC4 uauccggcccuguuCACGUUAc ||||||| aaaaaauauauauuGUGCAAUa 2 9 978 999 [dm3:X:13158016-13158037:-] 0.4861 140 7 -7.06 -1.1798 MIMAT0000355 dme-miR-210 32278 HDAC4 aucggcgACAGUGUGCGUGUu | |:| ||||||| agagguaUUUUA-ACGCACAc 2 15 519 538 [dm3:X:13158477-13158496:-] 0.4545 144 7 -12.38 -0.4319 MIMAT0000358 dme-miR-92b 32278 HDAC4 cguccggcccugAUCACGUUAa | ||||||| aaaaaauauauaUUGUGCAAUa 2 11 978 999 [dm3:X:13158016-13158037:-] 0.4861 142 7 -7.77 -1.1798 MIMAT0000391 dme-miR-305 32278 HDAC4 gucUCGUGGAC-UACUUCAUGUUa ||::| | | |||||||| uuuAGUGCAAGUUUCAAGUACAAc 2 21 900 923 [dm3:X:13158092-13158115:-] 0.4782 151 7 -12.90 -0.4855 MIMAT0000402 dme-miR-310 32278 HDAC4 uuuccggcccuUCACACGUUAu | |||||||| aaaaaauauauAUUGUGCAAUa 2 12 978 999 [dm3:X:13158016-13158037:-] 0.4861 147 7 -10.81 -1.1798 MIMAT0000403 dme-miR-311 32278 HDAC4 aguccggccacUUACACGUUAu | |||||||| aaaaaauauauAUUGUGCAAUa 2 12 978 999 [dm3:X:13158016-13158037:-] 0.4861 147 7 -10.69 -1.1780 MIMAT0000404 dme-miR-312 32278 HDAC4 aguccggcagaguuCACGUUAu ||||||| aaaaaauauauauuGUGCAAUa 2 9 978 999 [dm3:X:13158016-13158037:-] 0.4861 140 7 -9.31 -1.1762 MIMAT0000405 dme-miR-313 32278 HDAC4 agcccgacacuuuuCACGUUAu ||||||| aaaaaauauauauuGUGCAAUa 2 9 978 999 [dm3:X:13158016-13158037:-] 0.4861 140 7 -9.31 -1.1744 MIMAT0000407 dme-miR-315 32278 HDAC4 cgaaagacucGUUGUUAGUUUu ||| ||||||| caauaaaauaCAA-AAUCAAAg 2 13 1277 1297 [dm3:X:13157718-13157738:-] 0.4927 146 7 -8.38 -0.7894 MIMAT0000413 dme-miR-iab-4-3p 32278 HDAC4 caaugcAUAUGACUUCCAUAUGGc ||||| | | ||||||| aucuuaUAUAC-GUAUGUAUACCu 2 19 1079 1101 [dm3:X:13157914-13157936:-] 0.4980 160 7 -14.19 -0.8464 MIMAT0005463 dme-miR-iab-4as-5p 32278 HDAC4 gccaUAUGGAAGUCAUAUGCAUu | |:||| | |||||||| gccgAGAUCUU-A-UAUACGUAu 2 20 1073 1093 [dm3:X:13157922-13157942:-] 0.5165 155 7 -14.63 -0.7599 MIMAT0005467 dme-miR-190 32278 HDAC4 guUGGUU-C-UUAUAGUUUGUA-UAGa ||:|| | | |: ::||||| ||| ccACUAACGUACUGGUGAACAUCAUCa 2 23 606 632 [dm3:X:13158383-13158409:-] 0.4677 124 0 -8.44 -0.4095 MIMAT0005476 dme-miR-962 32278 HDAC4 cugUCGUAGUUAAAGAG--AUGGAAUa | :: |:|| || | ||||||| caaAUUGGCGAUCUCCCCUUACCUUAc 2 23 1970 1996 [dm3:X:13157019-13157045:-] 0.3748 153 7 -12.32 -0.1435 MIMAT0005490 dme-miR-974 32278 HDAC4 uuAUGAUGAAGAAACGAGCGAa |::|::| : ||||||| guUGUUGUUGUGGCGCUCGCUu 2 21 155 176 [dm3:X:13158839-13158860:-] 0.5909 148 7 -16.01 -0.1394 MIMAT0005497 dme-miR-981 32278 HDAC4 acguccaaagcagcUGUUGCUu ||||||| caagaaaaauaagcACAACGAg 2 9 1603 1624 [dm3:X:13157391-13157412:-] 0.4718 140 7 -10.98 -0.1034 MIMAT0005501 dme-miR-927 32278 HDAC4 ccauuucgcaUCCUUAAGAUuu | |||||||| cuauuauuuaAAGAAUUCUAua 3 13 927 948 [dm3:X:13158067-13158088:-] 0.4523 132 0 -7.77 -0.1004 MIMAT0005507 dme-miR-137 32278 HDAC4 gaugcacauaagagUUCGUUau |||||| uuuuaauaaaaaaaAAGCAAca 3 9 1257 1278 [dm3:X:13157737-13157758:-] 0.4927 120 0 -4.23 -0.2507 MIMAT0005513 dme-miR-994 32278 HDAC4 uagugccgaugauaaAGGAAUc |||||| agaaacuaaaaacuaUCCUUAa 2 8 1677 1698 [dm3:X:13157317-13157338:-] 0.5126 120 6 -7.91 -0.1716 MIMAT0005016 dme-miR-1003 32278 HDAC4 gacacUUAUAC---AUUUACACUCu | |:|| |||||||||| uauauAUUGUGCAAUAAAUGUGAGa 2 18 984 1008 [dm3:X:13158007-13158031:-] 0.4861 156 7 -18.98 -1.0837 MIMAT0005017 dme-miR-1004 32278 HDAC4 gacacucCCUUCACUACACUCu | || ||||||| auauuguGCAAUAAAUGUGAGa 2 16 987 1008 [dm3:X:13158007-13158028:-] 0.4861 143 7 -15.11 -1.0812 MIMAT0005019 dme-miR-1006 32278 HDAC4 gaUACUUAU-UCUUUA-GCUUAAAu | ||||| | | || ||||||| uuAGGAAUAUAUAUAUACGAAUUUu 2 22 1868 1892 [dm3:X:13157123-13157147:-] 0.4056 163 7 -10.62 -0.6884 MIMAT0005019 dme-miR-1006 32278 HDAC4 gauACUUAUUCUUUAGCU-UAAAu || | ||| ||||| |||| aguUGUAGAAGUCAUCGAGAUUUu 2 21 471 494 [dm3:X:13158521-13158544:-] 0.4545 132 0 -10.13 -0.4226 MIMAT0005027 dme-miR-1014 32278 HDAC4 gacguuuacuuuuACUUAAAa ||||||| uuuuuaucuuuccUGAAUUUg 2 9 2000 2020 [dm3:X:13156995-13157015:-] 0.3748 140 7 -3.11 -0.2113

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score HDAC4 RAID00079374 dme-miR-92a-3p miRNA MIMAT0000334 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID00128831 dme-miR-10-3p miRNA MIMAT0012531 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID00210884 dme-miR-1003-3p miRNA MIMAT0005016 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID00320446 dme-miR-87-3p miRNA MIMAT0000361 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID00415111 dme-miR-932-5p miRNA MIMAT0005479 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID00715030 dme-miR-210-3p miRNA MIMAT0000355 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID00919380 dme-miR-311-3p miRNA MIMAT0000403 HDAC4 mRNA 32278 Prediction 0.2381 HDAC4 RAID01055942 dme-miR-974-5p miRNA MIMAT0005490 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID01296202 dme-miR-33-5p miRNA MIMAT0000342 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID01303097 dme-miR-313-3p miRNA MIMAT0000405 HDAC4 mRNA 32278 Prediction 0.2381 HDAC4 RAID01306924 dme-miR-190-5p miRNA MIMAT0005467 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID01309975 dme-miR-972-3p miRNA MIMAT0005488 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID01387239 dme-miR-31b-5p miRNA MIMAT0000389 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID01388859 dme-miR-92b-3p miRNA MIMAT0000358 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID01456956 dme-miR-iab-4-3p miRNA MIMAT0000413 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID01552110 dme-miR-961-5p miRNA MIMAT0005475 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID01631923 dme-mir-2a-2 miRNA MI0000118 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID01693830 dme-miR-305-5p miRNA MIMAT0000391 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID01784268 dme-miR-31a-5p miRNA MIMAT0000400 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID01856984 dme-miR-315-5p miRNA MIMAT0000407 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID01970063 dme-miR-137-3p miRNA MIMAT0005507 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID02060874 dme-miR-992-3p miRNA MIMAT0005510 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID02152390 dme-miR-iab-8-5p miRNA MIMAT0005463 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID02230727 dme-miR-1000-5p miRNA MIMAT0005520 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID02259952 dme-miR-2c-3p miRNA MIMAT0000411 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID02421558 dme-miR-1004-3p miRNA MIMAT0005017 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID02593601 dme-miR-274-5p miRNA MIMAT0000332 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID02612182 dme-mir-iab-4 miRNA MI0000432 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID02714169 dme-miR-1014-3p miRNA MIMAT0005027 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID02742518 dme-miR-310-3p miRNA MIMAT0000402 HDAC4 mRNA 32278 Prediction 0.2381 HDAC4 RAID02834088 dme-miR-1006-3p miRNA MIMAT0005019 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID02931293 dme-miR-999-3p miRNA MIMAT0005519 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID03113401 dme-miR-927-5p miRNA MIMAT0005501 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID03162691 dme-miR-312-3p miRNA MIMAT0000404 HDAC4 mRNA 32278 Prediction 0.2381 HDAC4 RAID03260945 dme-miR-277-3p miRNA MIMAT0000338 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID03322583 dme-miR-994-5p miRNA MIMAT0005513 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID03458419 dme-miR-981-3p miRNA MIMAT0005497 HDAC4 mRNA 32278 Prediction 0.2202 HDAC4 RAID03711195 dme-miR-985-3p miRNA MIMAT0005502 HDAC4 mRNA 32278 Prediction 0.1828 HDAC4 RAID03766833 dme-miR-962-5p miRNA MIMAT0005476 HDAC4 mRNA 32278 Prediction 0.2202