DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 43782 NfI gccccgcucUCU-UACUAUUCc ||| ||||||| cuuuuuuuuAGAUUUGAUAAGu 2 13 578 599 [dm3:4:290477-290498:-] 0.4351 143 7 -8.19 -0.7949 MIMAT0000343 dme-miR-280 43782 NfI auAGUAAAGUAUACG-UUGCAUUUAUGu |:| | || || | ||| ||||||| auUUAAUACAGAUCCAAACUUAAAUACu 2 26 622 649 [dm3:4:290427-290454:-] 0.4100 172 7 -8.50 -0.5175 MIMAT0000364 dme-miR-289 43782 NfI ucaGCGUCCGAGGUGAA-UUUAUAAAu | || :|:: :|| ||||||| uuaCACAAUUUUUUUUUCUAAUAUUUa 2 24 600 626 [dm3:4:290450-290476:-] 0.4239 150 7 -7.42 -1.0037 MIMAT0000364 dme-miR-289 43782 NfI ucagcguccgaGGUGAAU-UUAUAAAu | |: || ||||||| uacuuuuagaaCAAUAUAUAAUAUUUc 2 16 981 1007 [dm3:4:290069-290095:-] 0.4152 146 7 -5.04 -0.6955 MIMAT0005482 dme-miR-967 43782 NfI gcgaagaggucuCCAUAGAGa |||||||| acaagcgauuucGGUAUCUCa 2 10 545 565 [dm3:4:290511-290531:-] 0.3936 145 7 -15.68 -0.1761 MIMAT0005499 dme-miR-983 43782 NfI aguaaUCAAGCUUUG-CAUAAUa | | :|| || |||||| gucagACUAUGACACAGUAUUAa 2 18 1060 1082 [dm3:4:289994-290016:-] 0.4412 121 6 -9.23 -0.5105 MIMAT0005500 dme-miR-984 43782 NfI uuUAAGGUUGGCAUAAAUGGAGu ||||: || || ||||||| agAUUCU--CC-UACUUACCUCc 2 22 954 973 [dm3:4:290103-290122:-] 0.3891 156 7 -14.77 -0.1914 MIMAT0005502 dme-miR-985 43782 NfI acGGGC---UGGUAACCUUGUAAAc |||| |:|| | ||||||| gaCCCGUAAAUCA-UCAAACAUUUu 2 21 1577 1600 [dm3:4:289476-289499:-] 0.3485 149 7 -16.38 -0.3634 MIMAT0005517 dme-miR-997 43782 NfI acUUUGAGGAA-GCUC-AAACCc ||||| :|| : || ||||| aaAAACUAUUUAUAAGAUUUGGc 2 20 2004 2026 [dm3:4:289050-289072:-] 0.4470 126 0 -9.86 -0.7344 MIMAT0005018 dme-miR-1005 43782 NfI gacGCUUAAUUUCUAA-GGUCu || |||:|| ||| |||| acaCGUAUUGAA-AUUCCCAGg 2 19 1031 1051 [dm3:4:290025-290045:-] 0.4412 128 0 -14.38 -0.1932 MIMAT0005021 dme-miR-1008 43782 NfI acAUUUG-UGUUUUUCG-ACACu ||:|: :|||||||| |||| gaUAGAUGGCAAAAAGCAUGUGc 2 20 1965 1987 [dm3:4:289089-289111:-] 0.4337 138 0 -15.07 -0.4550 MIMAT0005021 dme-miR-1008 43782 NfI acAUUUGUGUUUU---UCGACACu || :|:||:| :|||||| acUAUUUAUAAGAUUUGGCUGUGa 2 20 2008 2031 [dm3:4:289045-289068:-] 0.4470 134 6 -14.86 -0.1676 MIMAT0005026 dme-miR-1013 43782 NfI gcUCAAGCC----GUA--UGAAAAUa | ||||| ||| ||||||| uuAUUUCGGAUAUCAUGAACUUUUAu 2 19 660 685 [dm3:4:290391-290416:-] 0.4100 148 7 -12.26 -0.5291 MIMAT0005026 dme-miR-1013 43782 NfI gcucaagccguAUGAAAAUa |||||||| cucccuauuuuUACUUUUAg 2 10 970 989 [dm3:4:290087-290106:-] 0.3891 145 7 -5.73 -0.6162 MIMAT0005028 dme-miR-1015 43782 NfI gacguucuCUCUACAGGGUCCu || || ||||||| cacguauuGAAAU-UCCCAGGc 2 15 1032 1052 [dm3:4:290024-290044:-] 0.4412 148 7 -15.98 -0.2752 MIMAT0011784 dme-miR-2279* 43782 NfI uuAAAGUGUGUGUCUAUAAAUu |||::||||: ||||||| ccUUUUGCACAU--AUAUUUAa 2 21 109 128 [dm3:4:290948-290967:-] 0.4067 165 7 -11.24 -0.7684 MIMAT0011784 dme-miR-2279* 43782 NfI uuAAAGUGUGUG---UC----UAUAAAUu |||:||:||: || ||||||| uaUUUUACGCAUGUAAGCUACAUAUUUAa 2 21 1245 1273 [dm3:4:289803-289831:-] 0.3748 150 7 -14.20 -0.5777 MIMAT0011784 dme-miR-2279* 43782 NfI uuAAAGUGUGUGUCUAUAAAUu |||: : : | ||||||| aaUUUUUUUUUCUAAUAUUUAa 2 21 606 627 [dm3:4:290449-290470:-] 0.4239 148 7 -6.18 -1.0371 MIMAT0011784 dme-miR-2279* 43782 NfI uuAAAGUGUGUGUCUAUAAAUu | |:| |:: : ||||||| aaUAUUAAAUG-GCAUAUUUAa 2 21 1321 1341 [dm3:4:289735-289755:-] 0.3447 146 7 -6.34 -0.1700 MIMAT0011785 dme-miR-2279 43782 NfI uuUAUUUAUAGAAGCG-CACUUu ||||: || || || ||||| uuAUAAG-AU-UUGGCUGUGAAu 2 21 2013 2033 [dm3:4:289043-289063:-] 0.4470 124 0 -10.59 -0.5739 MIMAT0011787 dme-miR-2280* 43782 NfI aguCAAUCG-AACCUUCA-UUUAa || | : || ||||| |||| gauGUCAAUAUUAGAAGUCAAAUa 2 20 244 267 [dm3:4:290809-290832:-] 0.3955 122 0 -4.87 -0.8197 MIMAT0011789 dme-miR-2281 43782 NfI cgUUAUGACGUCUAUGUCUAu ||||:| :| |||||||| cuAAUAUU-UA-AUACAGAUc 2 20 617 635 [dm3:4:290441-290459:-] 0.4239 159 7 -11.65 -0.6705 MIMAT0011791 dme-miR-2283 43782 NfI uaacagcaUAAG--UACUAUAAAAg |||| || ||||||| caaccaaaAUUCUAAUCAUAUUUUa 2 16 1227 1251 [dm3:4:289825-289849:-] 0.3709 154 7 -4.57 -0.3538 MIMAT0012199 dme-miR-2492 43782 NfI aaACUUUCGAGAGC-UGUUUUGUa || :||:|| | |||||||| auUGUGAGUUCCAGAACAAAACAa 2 22 1905 1928 [dm3:4:289148-289171:-] 0.4203 164 7 -17.37 -0.7975 MIMAT0012204 dme-miR-2495 43782 NfI ucaGUCGGGUUAACUUCACGGu |||::| | | ||||||| auaCAGUUCUAAU-AAGUGCCu 2 20 1648 1668 [dm3:4:289408-289428:-] 0.3630 157 7 -18.93 -0.7393 MIMAT0012208 dme-miR-2497* 43782 NfI uuguUGAUGUAA-AACGUUACGAAUg |:||: || || :|||||||| uauuAUUAUUUUAUUUUAAUGCUUAa 2 22 1275 1300 [dm3:4:289776-289801:-] 0.3748 168 7 -12.55 -1.1067 MIMAT0012216 dme-miR-2501 43782 NfI aaucggguccgugAGGUUUGAAUg |||||||||| uauuuaauacagaUCCAAACUUAa 2 12 621 644 [dm3:4:290432-290455:-] 0.4100 155 7 -17.16 -0.5183 MIMAT0000113 dme-miR-8 43782 NfI cuguagaaAUGGACUGUCAUAAu ||: |||||||| agucagacUAUGACACAGUAUUa 2 16 1059 1081 [dm3:4:289995-290017:-] 0.4412 147 7 -13.00 -0.6750 MIMAT0000391 dme-miR-305 43782 NfI gucUCGUGGACU--ACUUCAUGUUa | :|::| | | |||||||| uauAAUAUUUCAAUUCAAGUACAAa 2 21 997 1021 [dm3:4:290055-290079:-] 0.4412 151 7 -10.07 -1.0269 MIMAT0000391 dme-miR-305 43782 NfI gucucguggacUAC-UUCAUGUUa ||| ||||||| acaaauauaaaAUGUUAGUACAAu 2 13 1931 1954 [dm3:4:289122-289145:-] 0.4203 143 7 -11.96 -0.8753 MIMAT0000407 dme-miR-315 43782 NfI cgaaagacucguuGUUAGUUUu |||||||| gcuaaauuuuuuuCAAUCAAAa 2 10 1831 1852 [dm3:4:289224-289245:-] 0.3630 145 7 -10.11 -0.3415 MIMAT0005474 dme-miR-960 43782 NfI cgaUACGUUAGACCUUAU-GAGu |||::| | | |||| ||| aagAUGUGAGC-GAAAUAUCUCc 2 20 772 793 [dm3:4:290283-290304:-] 0.4142 121 0 -6.35 -0.2890 MIMAT0005476 dme-miR-962 43782 NfI cuGUCGUAG-UUAAAGAGAUGGAAUa |||:| | ||| ||||||| auCAGUAACUAAUAAGAGUACCUUAa 2 24 68 93 [dm3:4:290983-291008:-] 0.4412 154 7 -12.95 -0.5636 MIMAT0005476 dme-miR-962 43782 NfI cugucGUAGUU-AAAGAGAUG-GAAUa :|| || | | ||||| |||| uacccUAUAAAGUAUAUCUACUCUUAa 2 21 362 388 [dm3:4:290688-290714:-] 0.3495 127 0 -11.15 -0.2778 MIMAT0005483 dme-miR-1002 43782 NfI agcgggaaacauAGGUGAUGAAUu ||: ||||||| uguaucaaagauUCUCCUACUUAc 2 13 946 969 [dm3:4:290107-290130:-] 0.3891 148 7 -10.59 -0.1134 MIMAT0005493 dme-miR-977 43782 NfI aaucugUUGCACUUAUAGAGu |:|| |||||||| gaugugAGCG-AAAUAUCUCc 2 16 774 793 [dm3:4:290283-290302:-] 0.4142 149 7 -12.80 -0.2062 MIMAT0005501 dme-miR-927 43782 NfI ccaUUUCG-CAUCCUUAAGAUUu ||||| |||||||| cacAAAGCAACCAAAAUUCUAAu 2 20 1220 1242 [dm3:4:289834-289856:-] 0.3709 146 7 -9.43 -0.4757 MIMAT0005504 dme-miR-987 43782 NfI guaguuAGGUCUGAUAAAUGAAAu ||| |:| |||||||| cuuaccUCCCUAUU-UUUACUUUu 2 19 965 987 [dm3:4:290089-290111:-] 0.3891 156 7 -10.39 -0.6584 MIMAT0005507 dme-miR-137 43782 NfI gaUGCACAUAAGAGUUCGUUAu |:| | || :|:||||||| aaAUG-GCAUAUUUAAGCAAUa 2 21 1327 1347 [dm3:4:289729-289749:-] 0.3447 158 7 -14.32 -0.5980 MIMAT0005516 dme-miR-252 43782 NfI gaggacgccguGAUCAUGAAUc :| ||||||| cugcuaauaauUUUGUACUUAu 2 12 879 900 [dm3:4:290176-290197:-] 0.3891 143 7 -10.59 -0.5434 MIMAT0005520 dme-miR-1000 43782 NfI ugacgacacugucCUGUUAUa ||||||| uauauuuaaguuuGACAAUAa 2 9 120 140 [dm3:4:290936-290956:-] 0.4067 140 7 -7.35 -0.9296 MIMAT0005016 dme-miR-1003 43782 NfI gacacuUAUACAUUUACACUCu |||| |:||||||| aauaauAUAUCAAGAUGUGAGc 2 17 761 782 [dm3:4:290294-290315:-] 0.4142 160 7 -12.52 -0.1236 MIMAT0005017 dme-miR-1004 43782 NfI gacacucccuucaCUACACUCu |||||||| aauaauauaucaaGAUGUGAGc 2 10 761 782 [dm3:4:290294-290315:-] 0.4142 145 7 -12.76 -0.1299 MIMAT0005024 dme-miR-1011 43782 NfI gacGCUCGCUAA-ACUUGGUUAUu :|| | || | |||||||| ucaUGAACUUUUAUUAACCAAUAa 2 21 672 695 [dm3:4:290381-290404:-] 0.4100 155 7 -10.32 -0.9104 MIMAT0005024 dme-miR-1011 43782 NfI gacgcUCGCUAAACUUGGUUAUu | | | | |||||||| cucuuAACCAAUAAAACCAAUAg 2 19 382 404 [dm3:4:290672-290694:-] 0.3674 150 7 -9.66 -0.1580

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G123174 NfI Drosophila melanogaster 43782

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score NfI RAID00211471 dme-miR-977-3p miRNA MIMAT0005493 NfI mRNA 43782 Prediction 0.2202 NfI RAID00264098 dme-miR-1015-3p miRNA MIMAT0005028 NfI mRNA 43782 Prediction 0.1828 NfI RAID00272649 dme-miR-927-5p miRNA MIMAT0005501 NfI mRNA 43782 Prediction 0.2202 NfI RAID00307043 dme-miR-1002-5p miRNA MIMAT0005483 NfI mRNA 43782 Prediction 0.2202 NfI RAID00610861 dme-miR-968-5p miRNA MIMAT0005484 NfI mRNA 43782 Prediction 0.1828 NfI RAID00668829 dme-miR-1006-3p miRNA MIMAT0005019 NfI mRNA 43782 Prediction 0.1828 NfI RAID00685531 dme-miR-1014-3p miRNA MIMAT0005027 NfI mRNA 43782 Prediction 0.1828 NfI RAID00816917 dme-miR-375-3p miRNA MIMAT0005472 NfI mRNA 43782 Prediction 0.1828 NfI RAID00984541 dme-miR-970-3p miRNA MIMAT0005486 NfI mRNA 43782 Prediction 0.1828 NfI RAID00993767 dme-miR-8-3p miRNA MIMAT0000113 NfI mRNA 43782 Prediction 0.2202 NfI RAID01107627 dme-miR-1013-3p miRNA MIMAT0005026 NfI mRNA 43782 Prediction 0.1828 NfI RAID01109666 dme-miR-964-5p miRNA MIMAT0005478 NfI mRNA 43782 Prediction 0.1828 NfI RAID01136716 dme-miR-1005-3p miRNA MIMAT0005018 NfI mRNA 43782 Prediction 0.1828 NfI RAID01219454 dme-miR-987-5p miRNA MIMAT0005504 NfI mRNA 43782 Prediction 0.2202 NfI RAID01250168 dme-miR-190-5p miRNA MIMAT0005467 NfI mRNA 43782 Prediction 0.1828 NfI RAID01280518 dme-miR-283-5p miRNA MIMAT0000347 NfI mRNA 43782 Prediction 0.1828 NfI RAID01542329 dme-miR-1004-3p miRNA MIMAT0005017 NfI mRNA 43782 Prediction 0.2202 NfI RAID01555366 dme-miR-967-5p miRNA MIMAT0005482 NfI mRNA 43782 Prediction 0.1828 NfI RAID01664944 dme-miR-1000-5p miRNA MIMAT0005520 NfI mRNA 43782 Prediction 0.2202 NfI RAID01764840 dme-miR-315-5p miRNA MIMAT0000407 NfI mRNA 43782 Prediction 0.2202 NfI RAID01918763 dme-miR-962-5p miRNA MIMAT0005476 NfI mRNA 43782 Prediction 0.2202 NfI RAID01931754 dme-miR-252-5p miRNA MIMAT0005516 NfI mRNA 43782 Prediction 0.2202 NfI RAID01949113 dme-miR-1003-3p miRNA MIMAT0005016 NfI mRNA 43782 Prediction 0.2202 NfI RAID01950338 dme-miR-1011-3p miRNA MIMAT0005024 NfI mRNA 43782 Prediction 0.2202 NfI RAID02013585 dme-miR-1008-3p miRNA MIMAT0005021 NfI mRNA 43782 Prediction 0.1828 NfI RAID02036476 dme-miR-985-3p miRNA MIMAT0005502 NfI mRNA 43782 Prediction 0.1828 NfI RAID02202636 dme-miR-2c-3p miRNA MIMAT0000411 NfI mRNA 43782 Prediction 0.1828 NfI RAID02681774 dme-mir-2a-2 miRNA MI0000118 NfI mRNA 43782 Prediction 0.1828 NfI RAID02789001 dme-miR-960-5p miRNA MIMAT0005474 NfI mRNA 43782 Prediction 0.1828 NfI RAID02957751 dme-miR-984-5p miRNA MIMAT0005500 NfI mRNA 43782 Prediction 0.1828 NfI RAID03152114 dme-miR-305-5p miRNA MIMAT0000391 NfI mRNA 43782 Prediction 0.2202 NfI RAID03394908 dme-miR-137-3p miRNA MIMAT0005507 NfI mRNA 43782 Prediction 0.2202 NfI RAID03475009 dme-miR-263b-5p miRNA MIMAT0000362 NfI mRNA 43782 Prediction 0.1828