DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005482 dme-miR-967 36460 Fsn gcgaagaggucuccAUAGAGa |||||| uguacauuuguauuUAUCUCa 2 8 57 77 [dm3:2R:9108710-9108730:-] 0.4900 120 6 -7.73 -0.2211 MIMAT0005488 dme-miR-972 36460 Fsn cggAUUUAU--AAGC---AUAACAUGu | |||| |||| | |||||| uagUUAAUAGUUUCGUUUUUUUGUACa 2 20 121 147 [dm3:2R:9108640-9108666:-] 0.5468 125 6 -14.94 -0.4121 MIMAT0005500 dme-miR-984 36460 Fsn uuUAAGGU-UGGC-AUAAAUGGAGu || :|| |: | ||||||||: cuAUCUCACAUGGCAAUUUACCUUa 2 22 202 226 [dm3:2R:9108561-9108585:-] 0.6036 139 0 -14.53 -0.1356 MIMAT0005510 dme-miR-992 36460 Fsn gaaucaUGGUCU--UUGCACAUGa |::||: | :|||||| ggauccAUUAGGUUAUUGUGUACa 2 17 39 62 [dm3:2R:9108725-9108748:-] 0.4900 131 6 -14.15 -0.1746 MIMAT0011786 dme-miR-2280 36460 Fsn uaUAAAAUAAC--GGUUCGAUUCu |||||:||| ::| |||||| gcAUUUUGUUGAUUUACGCUAAGc 2 21 155 178 [dm3:2R:9108609-9108632:-] 0.6036 143 6 -14.95 -0.1051 MIMAT0012215 dme-miR-2500 36460 Fsn gacuccAGGUGUGUGUUUUAGg |:: :::|||||||: uucguuUUUUUGUACAAAAUUa 2 17 132 153 [dm3:2R:9108634-9108655:-] 0.6036 136 0 -8.67 -0.1902 MIMAT0000114 dme-miR-9a 36460 Fsn aguauGUCGAUCU-AUUGGUUUcu :||:|| | ||||||| uaccuUAGUUAUACGAACCAAAug 3 19 220 243 [dm3:2R:9108544-9108567:-] 0.6036 137 0 -12.41 -0.1830 MIMAT0000334 dme-miR-92a 36460 Fsn uauccggcccuguuCACGUUac |||||| aaugaucgcugauuGUGCAAgu 3 9 291 312 [dm3:2R:9108475-9108496:-] 0.5685 120 0 -11.99 -0.1171 MIMAT0000338 dme-miR-277 36460 Fsn acAGCAUGGUCUAUCACGUAAAu |:|||| | || ||||||| uuUUGUACAAAAUUAUGCAUUUu 2 22 139 161 [dm3:2R:9108626-9108648:-] 0.6036 169 7 -13.60 -1.2042 MIMAT0000358 dme-miR-92b 36460 Fsn cguCCGGC-CCUGAUCACGUUaa | :|| ||:| |||||| aauGAUCGCUGAUU-GUGCAAgu 3 20 291 312 [dm3:2R:9108475-9108496:-] 0.5685 128 0 -13.59 -0.1084 MIMAT0000391 dme-miR-305 36460 Fsn gucucguggacuacuuCAUGUUa |||||| auaguuucguuuuuuuGUACAAa 2 8 127 149 [dm3:2R:9108638-9108660:-] 0.6036 120 6 -9.29 -0.4173 MIMAT0000392 dme-miR-9c 36460 Fsn agauGUCGAUCU-UAUGGUUUcu :||:|| | : |||||| accuUAGUUAUACGAACCAAAug 3 19 221 243 [dm3:2R:9108544-9108566:-] 0.6036 133 0 -11.50 -0.1830 MIMAT0000395 dme-miR-9b 36460 Fsn guauGUCGAUUUUAGUGGUUUcu :||:|| | |||||| accuUAGUUAUACGAACCAAAug 3 20 221 243 [dm3:2R:9108544-9108566:-] 0.6036 135 0 -12.07 -0.1847 MIMAT0000402 dme-miR-310 36460 Fsn uuuCCGGCCCUUCACACGUUau | :|| :| ||||||| aauGAUCGCUGAUUGUGCAAgu 3 20 291 312 [dm3:2R:9108475-9108496:-] 0.5685 135 0 -11.56 -0.1171 MIMAT0000403 dme-miR-311 36460 Fsn aguCCGGCCACUUACACGUUau | :|| ||| ||||||| aauGAUCGCUGAUUGUGCAAgu 3 20 291 312 [dm3:2R:9108475-9108496:-] 0.5685 147 0 -15.84 -0.1137 MIMAT0000404 dme-miR-312 36460 Fsn aguCCGGCAGAGU-UCACGUUau | :|| || | |||||| aauGAUCG-CUGAUUGUGCAAgu 3 20 291 312 [dm3:2R:9108475-9108496:-] 0.5685 124 0 -11.67 -0.1171 MIMAT0000405 dme-miR-313 36460 Fsn agccCGACACUUUUCACGUUau |||| | |||||| gaucGCUG---AUUGUGCAAgu 3 19 294 312 [dm3:2R:9108475-9108493:-] 0.5685 122 0 -10.81 -0.1148 MIMAT0000412 dme-miR-iab-4-5p 36460 Fsn aguccuAUGUAAGUCAUAUGCa ||| || : |||||| gcaauuUACCUUAGUUAUACGa 2 17 214 235 [dm3:2R:9108552-9108573:-] 0.6036 128 6 -11.30 -0.1845 MIMAT0005472 dme-miR-375 36460 Fsn auUGAAUUCGGUUUGCUUGUUu || | ||::| |||||| | uuACCUUAGUUAUACGAACCAa 2 21 219 240 [dm3:2R:9108547-9108568:-] 0.6036 136 0 -13.69 -0.1792 MIMAT0005476 dme-miR-962 36460 Fsn cugucguAGU-UAAAG--AGAUGGAAUa ||| || | |:||||||| cacuaucUCACAUGGCAAUUUACCUUAg 2 19 200 227 [dm3:2R:9108560-9108587:-] 0.6036 148 7 -12.09 -1.0760 MIMAT0005477 dme-miR-963 36460 Fsn cuuuguUGGACU-AUAAAUGGAAca || ||: ||||||||| uaucucACAUGGCAAUUUACCUUag 3 19 203 227 [dm3:2R:9108560-9108584:-] 0.6036 141 0 -11.88 -0.1209 MIMAT0005487 dme-miR-971 36460 Fsn agugacauucuucauUGUGGUu |||||| gaagcaauuuuuuauACACCAa 2 8 271 292 [dm3:2R:9108495-9108516:-] 0.5685 120 6 -10.34 -0.2939 MIMAT0005493 dme-miR-977 36460 Fsn aaucuguugcacuuAUAGAGu |||||| uguacauuuguauuUAUCUCa 2 8 57 77 [dm3:2R:9108710-9108730:-] 0.4900 120 6 -12.17 -0.2191 MIMAT0005507 dme-miR-137 36460 Fsn gaugcacAUAAGAGUUCGUUAu || | | ||||||| uaaacaaUAGU-UGAAGCAAUu 2 16 259 279 [dm3:2R:9108508-9108528:-] 0.5685 145 7 -8.52 -1.0288 MIMAT0005519 dme-miR-999 36460 Fsn ucugugucagaAUGUCAAUUGu | :||||||: aguucgauaaaUUUAGUUAAUa 2 12 108 129 [dm3:2R:9108658-9108679:-] 0.5468 127 0 -9.43 -0.1743 MIMAT0005520 dme-miR-1000 36460 Fsn ugacgacacuguccUGUUAUa |||||| uaauaagcgauuaaACAAUAg 2 8 248 268 [dm3:2R:9108519-9108539:-] 0.5685 120 6 -6.12 -0.1821 MIMAT0005027 dme-miR-1014 36460 Fsn gacGUUUACUUUUACUUAAAa |:|| |||||||| | auaCGAA-CCAAAUGAAUAUa 2 19 230 249 [dm3:2R:9108538-9108557:-] 0.5860 124 0 -7.55 -0.1293

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Fsn RAID00108404 dme-miR-375-3p miRNA MIMAT0005472 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID00175361 dme-miR-92b-3p miRNA MIMAT0000358 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID00805789 dme-miR-963-5p miRNA MIMAT0005477 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID00850107 dme-miR-967-5p miRNA MIMAT0005482 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID01008668 dme-miR-1000-5p miRNA MIMAT0005520 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID01184066 dme-miR-277-3p miRNA MIMAT0000338 Fsn mRNA 36460 Prediction 0.2202 Fsn RAID01258914 dme-miR-962-5p miRNA MIMAT0005476 Fsn mRNA 36460 Prediction 0.2202 Fsn RAID01294253 dme-miR-992-3p miRNA MIMAT0005510 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID01459679 dme-miR-999-3p miRNA MIMAT0005519 Fsn mRNA 36460 Prediction 0.2202 Fsn RAID01575682 dme-miR-1-3p miRNA MIMAT0000105 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID01930457 dme-miR-9a-5p miRNA MIMAT0000114 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID01935021 dme-miR-313-3p miRNA MIMAT0000405 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID02340619 dme-miR-312-3p miRNA MIMAT0000404 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID02454958 dme-miR-305-5p miRNA MIMAT0000391 Fsn mRNA 36460 Prediction 0.2202 Fsn RAID02516442 dme-miR-9b-5p miRNA MIMAT0000395 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID02673292 dme-miR-137-3p miRNA MIMAT0005507 Fsn mRNA 36460 Prediction 0.2202 Fsn RAID02747731 dme-miR-311-3p miRNA MIMAT0000403 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID02859596 dme-miR-iab-4-5p miRNA MIMAT0000412 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID03152349 dme-miR-310-3p miRNA MIMAT0000402 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID03154802 dme-miR-92a-3p miRNA MIMAT0000334 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID03263726 dme-mir-iab-4 miRNA MI0000432 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID03517569 dme-miR-972-3p miRNA MIMAT0005488 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID03586110 dme-miR-977-3p miRNA MIMAT0005493 Fsn mRNA 36460 Prediction 0.2202 Fsn RAID03937951 dme-miR-971-3p miRNA MIMAT0005487 Fsn mRNA 36460 Prediction 0.2202 Fsn RAID04009318 dme-miR-9c-5p miRNA MIMAT0000392 Fsn mRNA 36460 Prediction 0.1828 Fsn RAID04060027 dme-miR-1014-3p miRNA MIMAT0005027 Fsn mRNA 36460 Prediction 0.1828