DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 37954 CG30421 gccccGCUCUCUUACUAUUcc :|| || |||||| acguuUGAAAGUUUGAUAAaa 3 17 231 251 [dm3:2R:20643842-20643862:+] 0.4942 132 0 -11.02 -0.1305 MIMAT0000330 dme-miR-184* 37954 CG30421 gccccgcucUCUUACUAUUcc | | |||||| caaaacauuAUAUUGAUAAaa 3 13 765 785 [dm3:2R:20644376-20644396:+] 0.5927 124 0 -2.03 -0.1828 MIMAT0000343 dme-miR-280 37954 CG30421 auagUAAAGUAUACGUUGCAUUUAUGu :||| ||| ||| ||||||: gaaaGUUUGAUA--AAACUUAAAUAUa 2 24 237 261 [dm3:2R:20643848-20643872:+] 0.4942 148 0 -10.30 -0.1219 MIMAT0000363 dme-miR-288 37954 CG30421 guacuuuacuuuAGCUGUACUUu |: ||||||| aguuaagcuuuuUUUACAUGAAa 2 12 481 503 [dm3:2R:20644092-20644114:+] 0.4942 143 7 -8.11 -0.9550 MIMAT0000364 dme-miR-289 37954 CG30421 ucagcguccgaggUGAAUUUAUAAAu || || |||||| gaucuauauacaaACAUAUAUAUUUc 2 14 697 722 [dm3:2R:20644308-20644333:+] 0.5927 125 6 -6.19 -0.2212 MIMAT0000388 dme-miR-303 37954 CG30421 uggUCAAAGGACACUUUGGAUUu || ||::| | ||||||| cgaAGAUUUUUAU--AACCUAAc 2 21 334 354 [dm3:2R:20643945-20643965:+] 0.4942 153 7 -9.07 -0.7972 MIMAT0005464 dme-miR-iab-4as-3p 37954 CG30421 auUUGCAUAUGACUUACAUAgg ||: ||| ||:|||||| auAAUCCAUA-UGGAUGUAUac 3 21 11 31 [dm3:2R:20643622-20643642:+] 0.5445 142 0 -11.15 -0.1484 MIMAT0005464 dme-miR-iab-4as-3p 37954 CG30421 auuugcAUAUGACUUACAUAGg || | |||||||: uuucuuUAAAAAUAAUGUAUUc 2 17 719 740 [dm3:2R:20644330-20644351:+] 0.5927 132 0 -8.71 -0.2387 MIMAT0005488 dme-miR-972 37954 CG30421 cggaUUUAU-AAGCAUAACAUGu :| || ||:| ||||||| uuacGAUUACUUUGAAUUGUACa 2 19 566 588 [dm3:2R:20644177-20644199:+] 0.4942 157 7 -11.45 -1.1619 MIMAT0005508 dme-miR-990 37954 CG30421 ccggUUG-AGUCUUGCCACUUa ||| |:| |||||| | aaagAACUUUAUUACGGUGUAa 2 18 823 844 [dm3:2R:20644434-20644455:+] 0.5781 124 0 -14.34 -0.1039 MIMAT0005509 dme-miR-991 37954 CG30421 ugAAAGG---UUUGAUGUUGAAAUu ||||: :|: | ||||||| guUUUCUGGAGAGAAAGAACUUUAu 2 21 810 834 [dm3:2R:20644421-20644445:+] 0.5781 147 7 -8.94 -0.6629 MIMAT0011784 dme-miR-2279* 37954 CG30421 uuaaAGUG-UG-UGUCUAUAAAUu | || || || |||||||| aaccUAACGACUACCGAUAUUUAu 2 19 347 370 [dm3:2R:20643958-20643981:+] 0.4942 156 7 -10.52 -0.4901 MIMAT0011784 dme-miR-2279* 37954 CG30421 uuaAAGUGUGUGUCUAUAAAuu | || |||:| |||||| auaUACAAACAUAUAUAUUUcu 3 20 702 723 [dm3:2R:20644313-20644334:+] 0.5927 147 0 -8.67 -0.1994 MIMAT0011784 dme-miR-2279* 37954 CG30421 uuaAAGUGUGU-GUCU-AUAAAUu | :| :|| :||| |||||| uugUAUAAGCAUUAGACUAUUUAu 2 20 262 285 [dm3:2R:20643873-20643896:+] 0.4942 122 6 -7.49 -0.8159 MIMAT0011785 dme-miR-2279 37954 CG30421 uuuauuuauagaagcGCACUUu |||||| guauucauaaauaaaCGUGAAg 2 8 855 876 [dm3:2R:20644466-20644487:+] 0.5636 120 6 -11.09 -0.1780 MIMAT0011786 dme-miR-2280 37954 CG30421 uauaaaAUAACGG--UUC-GAUUCu ||| ||| ||| ||||| acgcacUAUAGCCAUAAGCCUAAGg 2 17 84 108 [dm3:2R:20643695-20643719:+] 0.5445 123 0 -12.65 -1.0444 MIMAT0011790 dme-miR-2282 37954 CG30421 uaAGAUAAAAAUCGAGUGGCUa |:| ||| || :||||||| guUUUCUUUAUAUUUCACCGAa 2 21 308 329 [dm3:2R:20643919-20643940:+] 0.4942 168 7 -14.50 -1.1979 MIMAT0011791 dme-miR-2283 37954 CG30421 uaacagcauaaGUA-CUAUAAAag ||| |||||| cuauauacaaaCAUAUAUAUUUcu 3 13 700 723 [dm3:2R:20644311-20644334:+] 0.5927 123 0 -5.18 -0.2070 MIMAT0012196 dme-miR-2489 37954 CG30421 ugACGUUUAUGUUGUAUGUUau |||::|| | |:|||||| aaUGCGGAU-CUAUAUACAAac 3 21 691 711 [dm3:2R:20644302-20644322:+] 0.5927 146 0 -14.10 -0.1321 MIMAT0012196 dme-miR-2489 37954 CG30421 ugacGUUU-AUGUUGUAUGUUAu |||| |::| :|||||| uagcCAAACAAUGAAGUACAAUu 2 19 372 394 [dm3:2R:20643983-20644005:+] 0.4942 141 6 -8.81 -0.1081 MIMAT0012199 dme-miR-2492 37954 CG30421 aaaCUUUCG-AGAGCUGUUUUGUa |||||| |: | ||||||| gacGAAAGCAUUACACCAAAACAu 2 21 749 772 [dm3:2R:20644360-20644383:+] 0.5927 163 7 -15.19 -0.8677 MIMAT0012214 dme-miR-2500* 37954 CG30421 ccauaacaUAUACACACAAGGAAUg |||| | | |||:||| auacaaacAUAUAUAU-UUCUUUAa 2 18 704 727 [dm3:2R:20644315-20644338:+] 0.5927 139 0 -5.15 -0.1486 MIMAT0012216 dme-miR-2501 37954 CG30421 aaucggguccgugaggUUUGAAUg ||||||| guuugaaaguuugauaAAACUUAa 2 9 233 256 [dm3:2R:20643844-20643867:+] 0.4942 140 7 -9.43 -1.1034 MIMAT0012531 dme-miR-10-3p 37954 CG30421 uuUGGAGAGAUCUUGGCU-UAAAc |||| | | ||||| |||| uaACCUAACGACUACCGAUAUUUa 2 22 346 369 [dm3:2R:20643957-20643980:+] 0.4942 129 0 -14.79 -0.9639 MIMAT0000347 dme-miR-283 37954 CG30421 ucUUAAUGGUCGACUAUAAAu || ||:| | ||||||| cuAACGACUA-CCGAUAUUUa 2 20 350 369 [dm3:2R:20643961-20643980:+] 0.4942 153 7 -9.96 -0.8109 MIMAT0000347 dme-miR-283 37954 CG30421 ucuuAAUG--GUCGACUAUAAAu |||| :| |||||||| agguUUACUUUAUAUGAUAUUUc 2 18 106 128 [dm3:2R:20643717-20643739:+] 0.5445 152 7 -11.49 -0.8899 MIMAT0000347 dme-miR-283 37954 CG30421 ucuuaauggucgacUAUAAAu |||||| auauacaaacauauAUAUUUc 2 8 702 722 [dm3:2R:20644313-20644333:+] 0.5927 120 6 -2.18 -0.2192 MIMAT0000355 dme-miR-210 37954 CG30421 aucggcgacagUGUGCGUGuu | |||||| aagaauauacaAAACGCACua 3 11 71 91 [dm3:2R:20643682-20643702:+] 0.5445 122 0 -10.27 -0.1264 MIMAT0000391 dme-miR-305 37954 CG30421 gucucguggacUACUUCAUGUUa ||||||||||| uuagccaaacaAUGAAGUACAAu 2 13 371 393 [dm3:2R:20643982-20644004:+] 0.4942 160 7 -17.70 -1.0710 MIMAT0005463 dme-miR-iab-4as-5p 37954 CG30421 gcCAUAUGGAAGUCAUAUGCAUu || || :|| || ||||||| uuGUUUAAUUUAAG-AUACGUAc 2 22 179 200 [dm3:2R:20643790-20643811:+] 0.4942 163 7 -9.82 -0.7088 MIMAT0005467 dme-miR-190 37954 CG30421 guugguucuUAUA-GUUUGUAUAga |||| ||||||||| ugcggaucuAUAUACAAACAUAUau 3 16 693 717 [dm3:2R:20644304-20644328:+] 0.5927 146 0 -13.38 -0.1649 MIMAT0005472 dme-miR-375 37954 CG30421 auugaaUUCGGUUU-GC-UUGUUu |||| ||: || ||||| aaaugaAAGCGAAGCCGAAACAAg 2 17 50 73 [dm3:2R:20643661-20643684:+] 0.5445 123 0 -14.43 -0.7304 MIMAT0005478 dme-miR-964 37954 CG30421 uucAAUUCGAGGGGAUAAGAUu | || | : ||||||| cuuUAAAAAUAAUGUAUUCUAu 2 20 722 743 [dm3:2R:20644333-20644354:+] 0.5927 143 7 -5.69 -1.0485 MIMAT0005487 dme-miR-971 37954 CG30421 agUGACAUUCUUCAUUGUGGUu || | ||| | | |||||| agAC-GAAAGCA-UUACACCAa 2 21 748 767 [dm3:2R:20644359-20644378:+] 0.5927 124 6 -11.84 -0.2609 MIMAT0005492 dme-miR-976 37954 CG30421 cguaacuaCUAUUG-AUUAGGUu |||| : ||||||| ----augcGAUAUUAUAAUCCAu 2 15 1 19 [dm3:2R:20643612-20643630:+] 0.5445 149 7 -10.89 -0.9151 MIMAT0005501 dme-miR-927 37954 CG30421 ccAUUUCGCAUCCUUAAGAUuu |||| | | |||||| uuUAAAAAUAAUGUAUUCUAua 3 21 723 744 [dm3:2R:20644334-20644355:+] 0.5927 132 0 -4.09 -0.1752 MIMAT0005504 dme-miR-987 37954 CG30421 guaGUUAGGUCUGAUAAAUGAAAu :|| || | :|||||||| ccaUAAGCC-UAAGGUUUACUUUa 2 22 95 117 [dm3:2R:20643706-20643728:+] 0.5445 151 7 -13.62 -0.9586 MIMAT0005504 dme-miR-987 37954 CG30421 guAGUUAGGUCUGAUAAAUGAAAu |:|||: || | ||||||| cuUUAAUU---ACGA-UUACUUUg 2 23 560 579 [dm3:2R:20644171-20644190:+] 0.4942 148 7 -7.35 -0.7359 MIMAT0005504 dme-miR-987 37954 CG30421 guaguUAGGUCUG---AUA-AAUGAAAu || || || ||| || |||| ucuauAUACAAACAUAUAUAUUUCUUUa 2 20 699 726 [dm3:2R:20644310-20644337:+] 0.5927 121 0 -8.26 -0.1853 MIMAT0005513 dme-miR-994 37954 CG30421 uagugccgAUG-AUAAAGGAAUc ||: ||||||:||| uacaaacaUAUAUAUUUCUUUAa 2 15 705 727 [dm3:2R:20644316-20644338:+] 0.5927 141 0 -10.17 -0.1664

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp15-31 RAID00368506 dme-miR-927-5p miRNA MIMAT0005501 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID00733254 dme-miR-210-3p miRNA MIMAT0000355 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID00754440 dme-miR-iab-8-5p miRNA MIMAT0005463 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID00979520 dme-miR-283-5p miRNA MIMAT0000347 Usp15-31 mRNA 37954 Prediction 0.2202 Usp15-31 RAID01049136 dme-miR-976-3p miRNA MIMAT0005492 Usp15-31 mRNA 37954 Prediction 0.2202 Usp15-31 RAID01116101 dme-miR-312-3p miRNA MIMAT0000404 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID01215864 dme-miR-932-5p miRNA MIMAT0005479 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID01403223 dme-miR-991-3p miRNA MIMAT0005509 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID01470522 dme-miR-964-5p miRNA MIMAT0005478 Usp15-31 mRNA 37954 Prediction 0.2202 Usp15-31 RAID01871515 dme-miR-987-5p miRNA MIMAT0005504 Usp15-31 mRNA 37954 Prediction 0.2202 Usp15-31 RAID01905584 dme-miR-310-3p miRNA MIMAT0000402 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID02058176 dme-miR-971-3p miRNA MIMAT0005487 Usp15-31 mRNA 37954 Prediction 0.2202 Usp15-31 RAID02089064 dme-miR-994-5p miRNA MIMAT0005513 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID02267785 dme-miR-375-3p miRNA MIMAT0005472 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID02296141 dme-mir-iab-4 miRNA MI0000432 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID02409624 dme-miR-190-5p miRNA MIMAT0005467 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID02769027 dme-miR-313-3p miRNA MIMAT0000405 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID02953106 dme-miR-92a-3p miRNA MIMAT0000334 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID03534029 dme-miR-311-3p miRNA MIMAT0000403 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID03605430 dme-miR-92b-3p miRNA MIMAT0000358 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID03686334 dme-miR-972-3p miRNA MIMAT0005488 Usp15-31 mRNA 37954 Prediction 0.1828 Usp15-31 RAID03771428 dme-miR-305-5p miRNA MIMAT0000391 Usp15-31 mRNA 37954 Prediction 0.2202 Usp15-31 RAID03966042 dme-miR-10-3p miRNA MIMAT0012531 Usp15-31 mRNA 37954 Prediction 0.1828