DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 34416 CG31716 ucaGCGUCCGAGGUGAAUUUAUAAAu :|:| ||::| |||||||||| accUGUACUCUUUA-UUAAAUAUUUc 2 24 31 55 [dm3:2L:10402801-10402825:+] 0.5511 169 7 -12.16 -1.1750 MIMAT0005502 dme-miR-985 34416 CG31716 acgggcugguaaccuUGUAAAc |||||| auacauauaaauaauACAUUUg 2 8 6 27 [dm3:2L:10402776-10402797:+] 0.5511 120 6 -8.88 -0.1179 MIMAT0010206 dme-miR-995* 34416 CG31716 gcgucgagggUGUAUUAAGCcc |:| |||||| uauaggcaaaAUAAAAUUCGaa 3 13 66 87 [dm3:2L:10402836-10402857:+] 0.5511 128 0 -9.04 -0.6370 MIMAT0005521 dme-miR-1001 34416 CG31716 acuaggaacccuCAAAUGGGu |||||||: aauaauacauuuGUUUACCUg 2 10 15 35 [dm3:2L:10402785-10402805:+] 0.5511 129 0 -8.95 -0.1245 MIMAT0011784 dme-miR-2279* 34416 CG31716 uuaaaguguguGUCUAUAAAuu :| |||||| guacucuuuauUAAAUAUUUcu 3 12 35 56 [dm3:2L:10402805-10402826:+] 0.5511 123 0 -2.25 -0.1854 MIMAT0011787 dme-miR-2280* 34416 CG31716 agucaAUCGA-ACCUUCAUUUAa || :| | |||||||| uuaaaUAUUUCUUAAAGUAAAUa 2 18 45 67 [dm3:2L:10402815-10402837:+] 0.5511 148 7 -7.18 -1.2943 MIMAT0011789 dme-miR-2281 34416 CG31716 cguUAUGACGUCUAUGU-CUAu ||| || | |||| ||| aauAUAAUGAAACUACAUGAUa 2 19 86 107 [dm3:2L:10402856-10402877:+] 0.5511 122 0 -7.22 -1.0669 MIMAT0011791 dme-miR-2283 34416 CG31716 uaACAGCAUAAGUA--CUAUAAAag ||| | ||:|| |||||| ccUGUACUCUUUAUUAAAUAUUUcu 3 22 32 56 [dm3:2L:10402802-10402826:+] 0.5511 136 0 -3.66 -0.1768 MIMAT0012199 dme-miR-2492 34416 CG31716 aaACUUUCGAGAGCUGU-UUUGUa ||||| : | :||:| ||||| aaUGAAACUACAUGAUACAAACAa 2 22 91 114 [dm3:2L:10402861-10402884:+] 0.5511 121 0 -12.27 -0.6973 MIMAT0012215 dme-miR-2500 34416 CG31716 gacuccagGUGUGUGUUUUAgg :|:| :|||||| aaaguaaaUAUAGGCAAAAUaa 3 15 58 79 [dm3:2L:10402828-10402849:+] 0.5511 130 0 -9.93 -0.2198 MIMAT0000333 dme-miR-275 34416 CG31716 gcgcgcgAUG-AAGUCCAUGGACu ||| ||:: |||||| uaaauaaUACAUUUGUUUACCUGu 2 17 13 36 [dm3:2L:10402783-10402806:+] 0.5511 123 6 -9.62 -0.1150 MIMAT0000347 dme-miR-283 34416 CG31716 ucuuaauggucgacUAUAAAu |||||| guacucuuuauuaaAUAUUUc 2 8 35 55 [dm3:2L:10402805-10402825:+] 0.5511 120 6 -1.78 -0.2349 MIMAT0000393 dme-miR-306 34416 CG31716 aacucucagugauucAUGGACu |||||| aauaauacauuuguuUACCUGu 2 8 15 36 [dm3:2L:10402785-10402806:+] 0.5511 120 6 -11.95 -0.1173 MIMAT0000406 dme-miR-314 34416 CG31716 ggcuugaauaaccGAGCUUAu :|||||| aggcaaaauaaaaUUCGAAUa 2 9 69 89 [dm3:2L:10402839-10402859:+] 0.5511 124 6 -9.68 -0.6128 MIMAT0005476 dme-miR-962 34416 CG31716 cugucgUAGUUAAAGAGAUGGA-AUa || |||| |:||||| || uaaauaAUACAUUUGUUUACCUGUAc 2 20 13 38 [dm3:2L:10402783-10402808:+] 0.5511 131 0 -10.45 -1.1820 MIMAT0005484 dme-miR-968 34416 CG31716 guugggAAAUUACCUAUGAUGAAu | |||| || ||||| | uucgaaUAUAAU-GAAACUACAUg 2 19 82 104 [dm3:2L:10402852-10402874:+] 0.5511 128 0 -8.63 -0.2002 MIMAT0005503 dme-miR-986 34416 CG31716 agUCAGUGUUGCGAUAAGCUcu || || ||: |||||| auAGGCAAAAUAAAAUUCGAau 3 21 67 88 [dm3:2L:10402837-10402858:+] 0.5511 136 0 -8.66 -0.3927 MIMAT0005019 dme-miR-1006 34416 CG31716 gauacUUAUUCUUUAGCUUAAAu ||||| || |||||| | ggcaaAAUAA-AAUUCGAAUAUa 2 19 70 91 [dm3:2L:10402840-10402861:+] 0.5511 136 0 -7.41 -0.2185

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cnot4 RAID00891004 dme-miR-306-5p miRNA MIMAT0000393 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID00942612 dme-miR-275-3p miRNA MIMAT0000333 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID01259539 dme-miR-283-5p miRNA MIMAT0000347 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID01867474 dme-miR-968-5p miRNA MIMAT0005484 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID02233890 dme-miR-986-5p miRNA MIMAT0005503 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID02600364 dme-miR-133-3p miRNA MIMAT0000340 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID03123249 dme-miR-1006-3p miRNA MIMAT0005019 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID03354275 dme-miR-958-3p miRNA MIMAT0005471 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID03368560 dme-miR-284-3p miRNA MIMAT0000348 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID03693808 dme-miR-981-3p miRNA MIMAT0005497 Cnot4 mRNA 34416 Prediction 0.1828 Cnot4 RAID03817425 dme-miR-314-3p miRNA MIMAT0000406 Cnot4 mRNA 34416 Prediction 0.2202 Cnot4 RAID04003178 dme-miR-962-5p miRNA MIMAT0005476 Cnot4 mRNA 34416 Prediction 0.1828