DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 34453 Trim9 auaGUAAAGU---AUA-CGUUGCA-UUUAUGu ||||| | ||| |:|:|| |||||| aagCAUUUAAAGGUAUCUCGAUGUAAAAUACa 2 25 267 298 [dm3:2L:10627249-10627280:+] 0.5303 134 6 -17.82 -1.2333 MIMAT0000360 dme-miR-287 34453 Trim9 cacguUUGCUAAAAGUUGUGu ||:| |||||||||| cucucAAUGUUUUUCAACACg 2 17 308 328 [dm3:2L:10627290-10627310:+] 0.5303 168 7 -17.33 -1.1010 MIMAT0005482 dme-miR-967 34453 Trim9 gcgaagAGGUCUCCAUAGAGa |::| ||||||||| aaagcaUUUAAAGGUAUCUCg 2 16 266 286 [dm3:2L:10627248-10627268:+] 0.5303 159 7 -16.87 -1.0042 MIMAT0005482 dme-miR-967 34453 Trim9 gcGAAG-AGGUCUCCAUAGAGa || | |::| ||||||| auCUCCAUUUAAUCGUAUCUCu 2 20 176 197 [dm3:2L:10627158-10627179:+] 0.6530 146 7 -18.11 -1.1293 MIMAT0005482 dme-miR-967 34453 Trim9 gcgaagaggucuccAUAGAGa |||||| aaaguucagcgacaUAUCUCc 2 8 161 181 [dm3:2L:10627143-10627163:+] 0.6530 120 6 -11.46 -0.1060 MIMAT0005488 dme-miR-972 34453 Trim9 cggAUUUAUAAGCAUA-ACAUGu || ||: :|||| ||||| acaUAUAUGGGUGUAUGUGUACg 2 20 125 147 [dm3:2L:10627107-10627129:+] 0.6530 127 0 -14.62 -0.8330 MIMAT0005500 dme-miR-984 34453 Trim9 uuuaagguuggcauaAAUGGAGu ||||||: auauauauguuagcaUUACCUUa 2 9 74 96 [dm3:2L:10627056-10627078:+] 0.6530 124 0 -10.98 -0.2172 MIMAT0005510 dme-miR-992 34453 Trim9 gaaUCAUGGUCUUUGCACAUGa |||| || || :|||||| gagAGUAGCA-AAUUGUGUACa 2 20 19 39 [dm3:2L:10627001-10627021:+] 0.6429 149 6 -15.30 -0.1285 MIMAT0011784 dme-miR-2279* 34453 Trim9 uuAAAGUGUGUGUCUAUA-AAUu | || :|:|:| |||| ||| ggUGUC-UAUAUAUAUAUGUUAg 2 21 65 86 [dm3:2L:10627047-10627068:+] 0.6530 122 0 -6.96 -1.2021 MIMAT0012196 dme-miR-2489 34453 Trim9 ugacguUUAUGUUGUAUGUUAu :||::|| ||||||| uaucucGAUGUAAAAUACAAUa 2 17 280 301 [dm3:2L:10627262-10627283:+] 0.5303 160 7 -12.31 -1.2735 MIMAT0012215 dme-miR-2500 34453 Trim9 gacUCCAGGUGUGUGUUUUAgg ||| : :|: |||||| gauAGGAAU-UAUUCAAAAUaa 3 20 242 262 [dm3:2L:10627224-10627244:+] 0.5303 125 0 -7.20 -0.2088 MIMAT0000334 dme-miR-92a 34453 Trim9 uauccggcccuguuCACGUUac |||||| aaaaaucaugcaccGUGCAAca 3 9 340 361 [dm3:2L:10627322-10627343:+] 0.5303 120 0 -6.76 -0.1103 MIMAT0000338 dme-miR-277 34453 Trim9 acaGCAUG-GUCUAUCAC-GUAAAu :|||| :||| || ||||| uugUGUACAUAGAGCUUGACAUUUg 2 21 31 55 [dm3:2L:10627013-10627037:+] 0.6480 123 0 -15.01 -0.9312 MIMAT0000338 dme-miR-277 34453 Trim9 acagcauggucuaucaCGUAAAu |||||| uucaaaauaauugaaaGCAUUUa 2 8 253 275 [dm3:2L:10627235-10627257:+] 0.5303 120 6 -8.00 -0.2356 MIMAT0000342 dme-miR-33 34453 Trim9 guuacGCUGAUGUUACGUGGa | | |: ||||||| agagcCAAAAAUCAUGCACCg 2 17 334 354 [dm3:2L:10627316-10627336:+] 0.5303 144 7 -10.25 -0.7968 MIMAT0000358 dme-miR-92b 34453 Trim9 cguccggcccugauCACGUUaa |||||| aaaaaucaugcaccGUGCAAca 3 9 340 361 [dm3:2L:10627322-10627343:+] 0.5303 120 0 -6.99 -0.1103 MIMAT0000391 dme-miR-305 34453 Trim9 gucuCGUGGACUAC--UUCAU-GUUa | ||| |:|| :|||| ||| gaucGAACCGGGUGGAGAGUAGCAAa 2 20 5 30 [dm3:2L:10626987-10627012:+] 0.6429 122 0 -13.66 -1.0640 MIMAT0000402 dme-miR-310 34453 Trim9 uuuccggccCUUCACACGUUau | | |||||| aaaaaucauGCACCGUGCAAca 3 14 340 361 [dm3:2L:10627322-10627343:+] 0.5303 121 0 -6.71 -0.1103 MIMAT0000403 dme-miR-311 34453 Trim9 aguccggccacuuaCACGUUau |||||| aaaaaucaugcaccGUGCAAca 3 9 340 361 [dm3:2L:10627322-10627343:+] 0.5303 120 0 -7.62 -0.1114 MIMAT0000404 dme-miR-312 34453 Trim9 aguccggcagaguuCACGUUau |||||| aaaaaucaugcaccGUGCAAca 3 9 340 361 [dm3:2L:10627322-10627343:+] 0.5303 120 0 -7.54 -0.1103 MIMAT0000405 dme-miR-313 34453 Trim9 agcccgacACUUUUCACGUUau || | |||||| aaaaaucaUGCACCGUGCAAca 3 15 340 361 [dm3:2L:10627322-10627343:+] 0.5303 126 0 -5.62 -0.1103 MIMAT0005463 dme-miR-iab-4as-5p 34453 Trim9 gccauAUGGAAGUCAUAUGCAUu |||||| | ||||| | agcauUACCUU-A--AUACGAAc 2 19 85 104 [dm3:2L:10627067-10627086:+] 0.6530 121 0 -11.28 -0.1101 MIMAT0005467 dme-miR-190 34453 Trim9 guugGUUCUUAUAGU--UUGUAUAGa ||| |:| ||| :||||||| ugggCAA-AGU-UCAGCGACAUAUCu 2 21 156 179 [dm3:2L:10627138-10627161:+] 0.6530 151 7 -13.99 -0.6241 MIMAT0005469 dme-miR-956 34453 Trim9 uuaccuAAUCUCACCAGAGCUuu ||| || |||||| aagcauUUAAAGGUAUCUCGAug 3 18 267 289 [dm3:2L:10627249-10627271:+] 0.5303 133 0 -9.95 -0.1632 MIMAT0005472 dme-miR-375 34453 Trim9 auugAAUUCGGUU-UGCUUGUUu ||| ::|| |||||||| agcaUUACCUUAAUACGAACAAu 2 19 85 107 [dm3:2L:10627067-10627089:+] 0.6530 157 7 -12.45 -1.2950 MIMAT0005476 dme-miR-962 34453 Trim9 cugucGUAGUUAA-AGAGAUGGAAUa :|| :|| | :||||||| auauaUAUAUGUUAGCAUUACCUUAa 2 21 72 97 [dm3:2L:10627054-10627079:+] 0.6530 147 7 -11.17 -1.2813 MIMAT0005477 dme-miR-963 34453 Trim9 cuuUGU-UGGACUAU--AAAUGGAAca |:| |: || || ||||||| uauAUAUAUAUGUUAGCAUUACCUUaa 3 22 71 97 [dm3:2L:10627053-10627079:+] 0.6530 131 0 -6.86 -0.2321 MIMAT0005478 dme-miR-964 34453 Trim9 uucAAUU--CGAGGGGAUAAG-AUu |||| |: :|:|||||| || cauUUAAUCGUAUCUCUAUUCGUAg 2 20 181 205 [dm3:2L:10627163-10627187:+] 0.5916 126 0 -12.02 -1.0603 MIMAT0005493 dme-miR-977 34453 Trim9 aaucuGUUGCACUUAUAGAGu ||:|| ||||||| aaguuCAGCG-ACAUAUCUCc 2 17 162 181 [dm3:2L:10627144-10627163:+] 0.6530 146 7 -15.17 -0.8006 MIMAT0005493 dme-miR-977 34453 Trim9 aaucuguugcacUUAUAGAGu ::|||||| aaagcauuuaaaGGUAUCUCg 2 10 266 286 [dm3:2L:10627248-10627268:+] 0.5303 125 6 -10.33 -0.1664 MIMAT0005493 dme-miR-977 34453 Trim9 aaucuguugcacuUAUAGAGu :|||||| ucuccauuuaaucGUAUCUCu 2 9 177 197 [dm3:2L:10627159-10627179:+] 0.6530 124 6 -6.72 -0.1486 MIMAT0005503 dme-miR-986 34453 Trim9 agUCAGUGUUGCGAUAAGC-UCu | ||::| | ||||||| || uuAAUCGUAUCUCUAUUCGUAGu 2 21 184 206 [dm3:2L:10627166-10627188:+] 0.5916 132 0 -15.34 -1.0661 MIMAT0005520 dme-miR-1000 34453 Trim9 ugacgacacuguccUGUUAUa |||||| ucucgauguaaaauACAAUAa 2 8 282 302 [dm3:2L:10627264-10627284:+] 0.5303 120 6 -5.50 -0.1915 MIMAT0005030 dme-miR-1017 34453 Trim9 ccuacuCAAACCCAUCUCGAAag || | |||||||| caaauuGUGUACAUAGAGCUUga 3 18 27 49 [dm3:2L:10627009-10627031:+] 0.6480 133 0 -9.60 -0.1083

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim9 RAID00023929 dme-miR-33-5p miRNA MIMAT0000342 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID00038070 dme-miR-190-5p miRNA MIMAT0005467 Trim9 mRNA 34453 Prediction 0.2381 Trim9 RAID00063227 dme-miR-313-3p miRNA MIMAT0000405 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID00121865 dme-miR-92b-3p miRNA MIMAT0000358 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID00427224 dme-miR-305-5p miRNA MIMAT0000391 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID00643991 dme-miR-963-5p miRNA MIMAT0005477 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID00701943 dme-miR-986-5p miRNA MIMAT0005503 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID00767873 dme-miR-992-3p miRNA MIMAT0005510 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID00875934 dme-miR-iab-8-5p miRNA MIMAT0005463 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID00955069 dme-miR-1000-5p miRNA MIMAT0005520 Trim9 mRNA 34453 Prediction 0.2202 Trim9 RAID01402415 dme-miR-967-5p miRNA MIMAT0005482 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID01470510 dme-miR-310-3p miRNA MIMAT0000402 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID01890503 dme-miR-312-3p miRNA MIMAT0000404 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID01992318 dme-miR-277-3p miRNA MIMAT0000338 Trim9 mRNA 34453 Prediction 0.2202 Trim9 RAID02166588 dme-miR-956-3p miRNA MIMAT0005469 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID02327961 dme-miR-977-3p miRNA MIMAT0005493 Trim9 mRNA 34453 Prediction 0.2381 Trim9 RAID02501894 dme-miR-962-5p miRNA MIMAT0005476 Trim9 mRNA 34453 Prediction 0.2202 Trim9 RAID02882377 dme-miR-92a-3p miRNA MIMAT0000334 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID02914814 dme-miR-964-5p miRNA MIMAT0005478 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID03299766 dme-miR-1017-3p miRNA MIMAT0005030 Trim9 mRNA 34453 Prediction 0.1828 Trim9 RAID03363421 dme-miR-375-3p miRNA MIMAT0005472 Trim9 mRNA 34453 Prediction 0.2202 Trim9 RAID03715238 dme-miR-311-3p miRNA MIMAT0000403 Trim9 mRNA 34453 Prediction 0.1828