DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 38103 CG32479 auaGUAAAGUAUACGUUGCAUUUAUGu ::|| | |||| | ||||||| ggaUGUUAGAAAUGC-CCUUAAAUACc 2 25 452 477 [dm3:3L:892627-892652:+] 0.5152 158 7 -8.52 -0.3517 MIMAT0000343 dme-miR-280 38103 CG32479 auaguAAAGUAUACGUUGCAUUUAUGu || || | |: |||||||| guguuUUCCACACAAAGAGUAAAUACa 2 23 657 683 [dm3:3L:892832-892858:+] 0.5152 158 7 -12.89 -0.3239 MIMAT0000343 dme-miR-280 38103 CG32479 auaguaaaguauacguugcaUUUAUGu |||||| accacaacgcggcguuguaaAAAUACa 2 8 7 33 [dm3:3L:892182-892208:+] 0.5152 120 6 -15.02 -0.1155 MIMAT0000363 dme-miR-288 38103 CG32479 guAC-UUUACUUU---AGCUGUACUUu || |:|||:|| | ||||||| caUGUAGAUGGAAGUUUAAACAUGAAa 2 22 806 832 [dm3:3L:892981-893007:+] 0.5152 155 7 -19.10 -0.9921 MIMAT0005464 dme-miR-iab-4as-3p 38103 CG32479 auUUGCAUAUGACUUACA-UAGg ||: ||:| ||||| ||| ggAAUAAUUAUUAAAUGUAAUCg 2 21 1176 1198 [dm3:3L:893351-893373:+] 0.4748 124 0 -8.41 -0.4920 MIMAT0005465 dme-miR-954 38103 CG32479 ugUGUGUUGCGU-UGUGGGUcu ||| ||||:| ||||||| uuACA-AACGUAUACACCCAua 3 20 1242 1262 [dm3:3L:893417-893437:+] 0.4897 148 0 -20.70 -0.1496 MIMAT0005509 dme-miR-991 38103 CG32479 ugaaagGUUUGAUGUUGAAAUu :| |: | ||||||| uaaaaaUACAUCAGAACUUUAa 2 17 24 45 [dm3:3L:892199-892220:+] 0.5152 148 7 -7.39 -0.6050 MIMAT0005509 dme-miR-991 38103 CG32479 ugaaAGGUUUGAUGU-UGAAAUu | | |:| |:| |||||| uaagUGCUAGCGAUAUACUUUAu 2 19 43 65 [dm3:3L:892218-892240:+] 0.5152 122 6 -7.68 -0.7566 MIMAT0005517 dme-miR-997 38103 CG32479 acuuugaggAAGCUCAAACCc | ||||||||| gagcgagaaUGCGAGUUUGGu 2 13 90 110 [dm3:3L:892265-892285:+] 0.5152 152 7 -16.93 -0.1916 MIMAT0005026 dme-miR-1013 38103 CG32479 gcucaaGCCGUAUGAAA-AUa || :||||||| || ugcuagCGAUAUACUUUAUAu 2 15 47 67 [dm3:3L:892222-892242:+] 0.5152 122 0 -10.72 -0.6854 MIMAT0011784 dme-miR-2279* 38103 CG32479 uuaaaGUGUGUGUCU-AUAAAUu |:||:|:| | |||||| cuaagCGCAUAUAUAUUAUUUAu 2 18 1286 1308 [dm3:3L:893461-893483:+] 0.4897 129 6 -11.85 -0.6604 MIMAT0011787 dme-miR-2280* 38103 CG32479 agucaaucgaaCCUUCAUUUAa | :||||||| uaaacuaaacaGCGAGUAAAUa 2 12 331 352 [dm3:3L:892506-892527:+] 0.5152 143 7 -6.13 -0.6561 MIMAT0011787 dme-miR-2280* 38103 CG32479 agucaaucgaaccUUCAUUUAa :||||||| uuuuccacacaaaGAGUAAAUa 2 10 660 681 [dm3:3L:892835-892856:+] 0.5152 141 7 -4.86 -0.4032 MIMAT0011791 dme-miR-2283 38103 CG32479 uaacaGC-AUAAGUACUAUAAAAg || ||| | | ||||||| gcuagCGAUAUACUUUAUAUUUUu 2 19 48 71 [dm3:3L:892223-892246:+] 0.5152 157 7 -6.79 -0.5653 MIMAT0011791 dme-miR-2283 38103 CG32479 uaacaGCAUA----AGUA-CUAUAAAAg ||||| ||| ||||||| acaaaCGUAUACACCCAUAUAUAUUUUc 2 19 1244 1271 [dm3:3L:893419-893446:+] 0.4897 144 7 -11.74 -0.7973 MIMAT0012200 dme-miR-2493* 38103 CG32479 accgaCACACACACACACUCg || | |||||||| uuagaGUACGAUUGUGUGAGa 2 17 200 220 [dm3:3L:892375-892395:+] 0.5152 148 7 -13.22 -1.1086 MIMAT0012208 dme-miR-2497* 38103 CG32479 uuGUUG--AUG-UAAAACGU-UAC-GAAUg |||| ||| | || :| ||| |||| auCAACCAUACUAGUUAAUAGAUGUCUUAc 2 24 1216 1245 [dm3:3L:893391-893420:+] 0.4897 120 0 -11.12 -0.8203 MIMAT0012215 dme-miR-2500 38103 CG32479 gaCUCCAGGUGUGUGUUUUAGg | | | |: :|||||||| uaGUGCUAAAUUUACAAAAUCc 2 21 367 388 [dm3:3L:892542-892563:+] 0.5152 152 7 -15.46 -0.8258 MIMAT0012216 dme-miR-2501 38103 CG32479 aaucggguccgugaggUUUGAAUg ||||||| cgauugugugagaaagAAACUUAg 2 9 208 231 [dm3:3L:892383-892406:+] 0.5152 140 7 -7.24 -0.1650 MIMAT0000109 dme-miR-4 38103 CG32479 agUUAC-CAACAGAU-CGAAAUa |||| ||| || |||||| cgAAUGCUUUGAAUAUGCUUUAa 2 20 611 633 [dm3:3L:892786-892808:+] 0.5152 126 6 -8.91 -1.0098 MIMAT0000338 dme-miR-277 38103 CG32479 acAGCAUGGUCUAU--CACGUAAAu ||| : || : | ||||||| uuUCGCGGCAUGCACCAUGCAUUUa 2 22 558 582 [dm3:3L:892733-892757:+] 0.5152 144 7 -12.83 -0.6284 MIMAT0000342 dme-miR-33 38103 CG32479 guuACGCUGAUGUUACGUGGa | || | :| ||||||| aguUUCG-CGGC-AUGCACCa 2 19 556 574 [dm3:3L:892731-892749:+] 0.5152 142 7 -16.58 -0.2495 MIMAT0000347 dme-miR-283 38103 CG32479 ucuuaaUGGUCGA-CUAUAAAu |:|| | ||||||| gaccaaAUCAAAUAGAUAUUUc 2 16 764 785 [dm3:3L:892939-892960:+] 0.5152 146 7 -6.87 -0.8888 MIMAT0000361 dme-miR-87 38103 CG32479 guguggacUUUAAAACGAGUu || ||||||||| uuacuaacAAUUUUUGCUCAu 2 14 788 808 [dm3:3L:892963-892983:+] 0.5152 157 7 -11.67 -1.0462 MIMAT0000362 dme-miR-263b 38103 CG32479 cacuuaagaggguCACGGUUc ||||||| auuuauagauaucGUGCCAAu 2 9 1303 1323 [dm3:3L:893478-893498:+] 0.4897 140 7 -10.98 -0.5119 MIMAT0000407 dme-miR-315 38103 CG32479 cgaaAGA-CUCGUUG-UUAGUUUu ||| || | | ||||||| auggUCUCGAAGACCAAAUCAAAu 2 19 753 776 [dm3:3L:892928-892951:+] 0.5152 148 7 -12.05 -0.5855 MIMAT0005463 dme-miR-iab-4as-5p 38103 CG32479 gccAUAUGG-AAGUC---AUAUGCAUu |||::: ||:|| |||||||| uuaUAUGUUGUUUAGUUUUAUACGUAa 2 21 942 968 [dm3:3L:893117-893143:+] 0.4988 158 7 -16.13 -1.1194 MIMAT0005467 dme-miR-190 38103 CG32479 guUGGUUC--UUAUAGUUUGUAUAga | |:|| |||| : ||||||| acAGCGAGUAAAUAAUUAACAUAUaa 3 23 339 364 [dm3:3L:892514-892539:+] 0.5152 145 0 -12.30 -0.1059 MIMAT0005469 dme-miR-956 38103 CG32479 uuaccuAAUCUCACCAGAGCUUu ||: |||||||||| uuacuuUUGUUAUGGUCUCGAAg 2 18 742 764 [dm3:3L:892917-892939:+] 0.5152 157 7 -19.18 -0.2248 MIMAT0005479 dme-miR-932 38103 CG32479 gacguUACGUG-AUGCCUU-AACu || ||| |||||| ||| cauauAUACACAAACGGAACUUGu 2 18 988 1011 [dm3:3L:893163-893186:+] 0.4988 124 0 -13.71 -0.6467 MIMAT0005480 dme-miR-965 38103 CG32479 uuccccUUU--UCGAUAUG-CGAAu ||| | |||||| |||| cugaauAAAUUAUCUAUACGGCUUu 2 17 841 865 [dm3:3L:893016-893040:+] 0.5152 123 0 -11.57 -0.5563 MIMAT0005496 dme-miR-980 38103 CG32479 auucgggaaguguUCCGUCGau ||||||| ugaguagaaaaauAGGCAGCaa 3 10 257 278 [dm3:3L:892432-892453:+] 0.5152 125 0 -14.47 -0.1363 MIMAT0005503 dme-miR-986 38103 CG32479 aguCAGUGUUGCGAUAAGCUCu | | : |:| |||||||| uuuGCCUUCAUGAUAUUCGAGu 2 20 1066 1087 [dm3:3L:893241-893262:+] 0.4645 155 7 -14.03 -0.6071 MIMAT0005503 dme-miR-986 38103 CG32479 agUCAGUGUUG--C--GAUAAGCUCu | | ||||: | |||||||| aaAUUAACAAUUAGAUAUAUUCGAGc 2 21 132 157 [dm3:3L:892307-892332:+] 0.5152 146 7 -13.46 -0.7322 MIMAT0005504 dme-miR-987 38103 CG32479 guaGUUAGGUCUGA-UAAAUGAAAu :|| ||| |:| : ||||||| cugUAAGCCAAAUUGGGUUACUUUu 2 22 725 749 [dm3:3L:892900-892924:+] 0.5152 160 7 -13.22 -0.1715 MIMAT0005511 dme-miR-929 38103 CG32479 guuagacUGAGGCAAUCCCUc |||:: ||||||| uagagaaACUUU-UUAGGGAu 2 15 1022 1041 [dm3:3L:893197-893216:+] 0.4988 148 7 -12.61 -0.5233 MIMAT0005512 dme-miR-993 38103 CG32479 ucUAUGGAC-AUCUCUGCUCGAag | || || || ||||||| uuAAACAUGAAAGUAACGAGCUga 3 22 821 844 [dm3:3L:892996-893019:+] 0.5152 136 0 -13.49 -0.1684 MIMAT0005519 dme-miR-999 38103 CG32479 ucUGUGUCAGAAUGUCAAUUGu :|| || || ||||||| caGCAAAG---UA-AGUUAACa 2 21 901 918 [dm3:3L:893076-893093:+] 0.4988 142 7 -12.67 -0.7600

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp10 RAID00030668 dme-miR-994-5p miRNA MIMAT0005513 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID00154182 dme-miR-956-3p miRNA MIMAT0005469 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID00358765 dme-miR-985-3p miRNA MIMAT0005502 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID00447143 dme-miR-34-5p miRNA MIMAT0000350 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID00892016 dme-miR-987-5p miRNA MIMAT0005504 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID00931303 dme-miR-1003-3p miRNA MIMAT0005016 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID01095698 dme-miR-87-3p miRNA MIMAT0000361 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID01134030 dme-miR-929-3p miRNA MIMAT0005511 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID01175258 dme-miR-932-5p miRNA MIMAT0005479 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID01374782 dme-miR-991-3p miRNA MIMAT0005509 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID01438308 dme-let-7-5p miRNA MIMAT0000396 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID01711568 dme-miR-993-3p miRNA MIMAT0005512 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID01742731 dme-miR-283-5p miRNA MIMAT0000347 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID01844715 dme-miR-263b-5p miRNA MIMAT0000362 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID01899232 dme-miR-124-3p miRNA MIMAT0000351 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID01956553 dme-miR-980-3p miRNA MIMAT0005496 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID02009589 dme-miR-33-5p miRNA MIMAT0000342 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID02055275 dme-miR-190-5p miRNA MIMAT0005467 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID02095085 dme-miR-972-3p miRNA MIMAT0005488 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID02449784 dme-miR-305-5p miRNA MIMAT0000391 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID02596014 dme-miR-315-5p miRNA MIMAT0000407 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID02708157 dme-miR-959-3p miRNA MIMAT0005473 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID02710515 dme-miR-137-3p miRNA MIMAT0005507 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID02723396 dme-miR-986-5p miRNA MIMAT0005503 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID02906256 dme-miR-965-3p miRNA MIMAT0005480 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID02920223 dme-miR-iab-8-5p miRNA MIMAT0005463 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID03206539 dme-miR-1004-3p miRNA MIMAT0005017 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID03396637 dme-miR-997-5p miRNA MIMAT0005517 Usp10 mRNA 38103 Prediction 0.1828 Usp10 RAID03704506 dme-miR-999-3p miRNA MIMAT0005519 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID03763248 dme-miR-4-3p miRNA MIMAT0000109 Usp10 mRNA 38103 Prediction 0.2202 Usp10 RAID04011096 dme-miR-277-3p miRNA MIMAT0000338 Usp10 mRNA 38103 Prediction 0.2381