DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 318098 CG32581 ucagcguccgaggugaauuUAUAAAu |||||| ucaaaaauuguauaaauuuAUAUUUu 2 8 288 313 [dm3:X:15690973-15690998:-] 0.4781 120 6 -4.79 -0.1565 MIMAT0000388 dme-miR-303 318098 CG32581 uggucaaaggacacUUUGGAUuu :|||||| -----------gaaGAACCUAua 3 10 1 12 [dm3:X:15691274-15691285:-] 0.5335 121 0 -9.24 -0.2449 MIMAT0005488 dme-miR-972 318098 CG32581 cggAUUUAUAAG--CAUAACAUGu ||:|| ||| ||||||: augUAGAU-UUCAAAAAUUGUAUa 2 20 279 301 [dm3:X:15690985-15691007:-] 0.4781 132 0 -9.44 -0.3550 MIMAT0005502 dme-miR-985 318098 CG32581 acgggcUGGUAA-CCUUGUAAAc | |||| ||||||| cuauaaAACAUUAAAAACAUUUa 2 17 319 341 [dm3:X:15690945-15690967:-] 0.4781 147 7 -6.55 -1.2972 MIMAT0005509 dme-miR-991 318098 CG32581 ugaAAGGUUU--GAUG--UUGAAAUu ||::||| |||: ||| ||| auaUUUUAAAUUCUAUAAAACAUUAa 2 20 307 332 [dm3:X:15690954-15690979:-] 0.4781 125 0 -7.78 -0.1727 MIMAT0010206 dme-miR-995* 318098 CG32581 gcgucgaggguguauUAAGCCc |||||| acauaaauuguuagcAUUCGGu 2 8 121 142 [dm3:X:15691144-15691165:-] 0.5335 120 6 -9.08 -0.1193 MIMAT0011784 dme-miR-2279* 318098 CG32581 uuAAAGUGUGUGUCUAUAAAuu || :|:| |: |||||| aaUUGUAUAAAUUUAUAUUUua 3 21 293 314 [dm3:X:15690972-15690993:-] 0.4781 136 0 -4.82 -0.2937 MIMAT0011788 dme-miR-2281* 318098 CG32581 aacguaGACGUCGACGUC-UAUUa || |: || ||| |||| aauaccCUACGACUUCAGCAUAAa 2 18 211 234 [dm3:X:15691052-15691075:-] 0.4867 121 0 -9.31 -1.0212 MIMAT0011791 dme-miR-2283 318098 CG32581 uaacAGCAUAAGU-ACUAUAAAAg |:|||| | | ||||||| aaaaUUGUAUAAAUUUAUAUUUUa 2 20 291 314 [dm3:X:15690972-15690995:-] 0.4781 158 7 -7.80 -1.2871 MIMAT0011791 dme-miR-2283 318098 CG32581 uaacagcauaaguacuAUAAAAg |||||| aaacauuaaaaacauuUAUUUUa 2 8 324 346 [dm3:X:15690940-15690962:-] 0.4781 120 6 -3.99 -0.4734 MIMAT0012195 dme-miR-307-as 318098 CG32581 cugagugaguuggacCCACACu |||||| ugggcuauagucguuGGUGUGa 2 8 92 113 [dm3:X:15691173-15691194:-] 0.5335 120 6 -19.30 -0.1473 MIMAT0012199 dme-miR-2492 318098 CG32581 aaACUUUCGAGAGCUGUUUUGUa | :|:| | ||| ||||||| auUUGAGGAU-UCG-CAAAACAg 2 22 153 173 [dm3:X:15691113-15691133:-] 0.5335 153 7 -16.73 -0.4097 MIMAT0012199 dme-miR-2492 318098 CG32581 aaACUUUCGAGAGCUGUUUUGUa | ||| :||| |:|||||| uuUUAAA-UUCU--AUAAAACAu 2 22 310 329 [dm3:X:15690957-15690976:-] 0.4781 140 6 -9.85 -0.4202 MIMAT0012199 dme-miR-2492 318098 CG32581 aaacuuucgagagcugUUUUGUa |||||| auucuauaaaacauuaAAAACAu 2 8 316 338 [dm3:X:15690948-15690970:-] 0.4781 120 6 -8.38 -0.2822 MIMAT0000319 dme-miR-263a 318098 CG32581 cacUUAAGAAGGUCACGGUAAUUg |||||| : | |||||| uuaAAUUCUAUAA--AACAUUAAa 2 22 312 333 [dm3:X:15690953-15690974:-] 0.4781 122 6 -8.14 -0.5540 MIMAT0000347 dme-miR-283 318098 CG32581 ucUUA--AUGGUCGACUAUAAAu ||| ||: | :| |||||| aaAAUUGUAUAAAUUUAUAUUUu 2 20 291 313 [dm3:X:15690973-15690995:-] 0.4781 126 6 -3.82 -0.1550 MIMAT0000390 dme-miR-304 318098 CG32581 gaGUGUAAAUGUUUAACU-CUAAu :|:| ||::|| |||| |||| guUAUAAUUGUAAUUUGAGGAUUc 2 22 141 164 [dm3:X:15691122-15691145:-] 0.5335 137 0 -11.87 -0.8170 MIMAT0000390 dme-miR-304 318098 CG32581 gagugUAAAU---GUUUAAC-UCUAAu ||||| |||| || ||||| uaaugAUUUAAUUCAAA-UGUAGAUUu 2 19 263 288 [dm3:X:15690998-15691023:-] 0.4781 123 0 -7.98 -1.1794 MIMAT0000407 dme-miR-315 318098 CG32581 cgaaagACUCGUUGUUAGUUUu || | |::||||||| aaagcgUGCGAAGUAAUCAAAu 2 17 28 49 [dm3:X:15691237-15691258:-] 0.5335 156 7 -9.86 -0.7821 MIMAT0000407 dme-miR-315 318098 CG32581 cgaaagacUCGUUGUUAGUUuu ||: | |||||| uauccuccAGUUA-AAUCAAca 3 15 55 75 [dm3:X:15691211-15691231:-] 0.5335 124 0 -5.34 -0.2266 MIMAT0005478 dme-miR-964 318098 CG32581 uucaauucgaggggaUAAGAUu |||||| aaauuuauauuuuaaAUUCUAu 2 8 301 322 [dm3:X:15690964-15690985:-] 0.4781 120 6 -4.83 -0.2933 MIMAT0005501 dme-miR-927 318098 CG32581 ccAUUUCGCAUCCUUAAGAUuu || | : || ||||||| uuUAUAUUUUA--AAUUCUAua 3 21 304 323 [dm3:X:15690963-15690982:-] 0.4781 129 0 -4.43 -0.4265 MIMAT0005504 dme-miR-987 318098 CG32581 guaguUAGGUCUGAUAAAUGAAAu ||: | | |||||:||| aaaacAUUAAAAACAUUUAUUUUa 2 20 323 346 [dm3:X:15690940-15690963:-] 0.4781 143 0 -11.11 -0.1465

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG32581 RAID00053632 dme-miR-985-3p miRNA MIMAT0005502 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID00595169 dme-miR-311-3p miRNA MIMAT0000403 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID00682096 dme-miR-92b-3p miRNA MIMAT0000358 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID01479132 dme-miR-927-5p miRNA MIMAT0005501 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID02109438 dme-miR-283-5p miRNA MIMAT0000347 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID02228931 dme-miR-312-3p miRNA MIMAT0000404 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID02601912 dme-miR-964-5p miRNA MIMAT0005478 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID02788028 dme-miR-315-5p miRNA MIMAT0000407 CG32581 mRNA 318098 Prediction 0.2202 CG32581 RAID02872828 dme-miR-263a-5p miRNA MIMAT0000319 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID02963443 dme-miR-987-5p miRNA MIMAT0005504 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID03009147 dme-miR-310-3p miRNA MIMAT0000402 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID03217144 dme-miR-304-5p miRNA MIMAT0000390 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID03909251 dme-miR-313-3p miRNA MIMAT0000405 CG32581 mRNA 318098 Prediction 0.1828 CG32581 RAID04040205 dme-miR-92a-3p miRNA MIMAT0000334 CG32581 mRNA 318098 Prediction 0.1828