DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 32001 Atg8a auaGUAAAGUAUACGUUGCAUUUAUgu :| || || | : |: |||||| cggUAAUUAAUCUAUUAU-UAAAUAaa 3 25 547 572 [dm3:X:10658919-10658944:-] 0.5757 134 0 -5.60 -0.1989 MIMAT0000343 dme-miR-280 32001 Atg8a auaguaaagUAUACGU-UGCAUUUAUgu | || :| |: |||||| ccuauacagAAAUCUAUAUAUAAAUAaa 3 19 40 67 [dm3:X:10659424-10659451:-] 0.6181 129 0 -4.80 -0.4235 MIMAT0000343 dme-miR-280 32001 Atg8a auAGUAAA---GU-AUACGUUGCAUUUAUGu |:|| | || ||| : |: || |||| ugUUAUGUGAACAUUAUUUUAUAUAUAUACa 2 26 229 259 [dm3:X:10659232-10659262:-] 0.5757 123 0 -10.25 -0.1259 MIMAT0000343 dme-miR-280 32001 Atg8a auaguaaaGUAUACGUUGCAUUUAUGu || | | || |||||| uaaauaaaCAAAAACCACAAAAAUAC- 2 20 565 590 [dm3:X:10658901-10658926:-] 0.5757 123 6 -4.28 -0.1082 MIMAT0000363 dme-miR-288 32001 Atg8a guacuuUACUUUA-GCUGUACUUu | ||||| | ||||||| aaccgcAGGAAAUGCCACAUGAAa 2 18 134 157 [dm3:X:10659334-10659357:-] 0.5220 160 7 -15.11 -0.5922 MIMAT0000364 dme-miR-289 32001 Atg8a ucagcguccGAGGUGAAUUUAUAAAu ||:::|| ||||||| acuuuguuaCUUUGCU--AAUAUUUc 2 18 426 449 [dm3:X:10659042-10659065:-] 0.5757 150 7 -8.45 -1.0298 MIMAT0000364 dme-miR-289 32001 Atg8a ucagcguccgaggugaauuUAUAAAu |||||| aucuauauauaaauaaaauAUAUUUu 2 8 51 76 [dm3:X:10659415-10659440:-] 0.6181 120 6 -5.19 -0.1236 MIMAT0005481 dme-miR-966 32001 Atg8a ggugugucgggUGUUGGGUGu | ||:|||| gggcaacaaaaAAAAUCCACa 2 11 184 204 [dm3:X:10659287-10659307:-] 0.5488 126 0 -13.47 -0.1008 MIMAT0005489 dme-miR-973 32001 Atg8a uuuUAGCUUCAAGUUGG-UGGUUGGu | |||| ||||| ||||||| auuAACGAA--ACAACCAACCAACCa 2 23 310 333 [dm3:X:10659158-10659181:-] 0.5757 162 7 -26.55 -1.1754 MIMAT0005491 dme-miR-975 32001 Atg8a uaUGUCCUACAUCCUUCACAAAu |:| || || |||||| aaAUAAAAUAUAUUUUGUGUUUa 2 22 61 83 [dm3:X:10659408-10659430:-] 0.6181 121 6 -6.20 -0.1413 MIMAT0005502 dme-miR-985 32001 Atg8a acgggcUGGUAACCUUGUAAac :::|| ||||||| acaauuGUUAUGUGAACAUUau 3 17 224 245 [dm3:X:10659246-10659267:-] 0.5757 132 0 -9.77 -0.1186 MIMAT0005510 dme-miR-992 32001 Atg8a gaaucAUGGUCUUUGCACAUGa | :|:| | |||||| gacucUCUCGGUUAAGUGUACg 2 18 527 548 [dm3:X:10658943-10658964:-] 0.5757 121 6 -12.35 -0.1021 MIMAT0011784 dme-miR-2279* 32001 Atg8a uuaAAGUGUGUGUCUAUAAAUu ||| ::::| ||||||| aaaUUC-UGUGC--AUAUUUAg 2 20 489 507 [dm3:X:10658984-10659002:-] 0.5757 142 7 -6.52 -0.3557 MIMAT0011784 dme-miR-2279* 32001 Atg8a uuAAAGUG-UGUGUCUAUAAAuu | |:|| ::| |||||| uuUGUUACUUUGCUAAUAUUUca 3 21 428 450 [dm3:X:10659041-10659063:-] 0.5757 127 0 -3.94 -0.2516 MIMAT0011784 dme-miR-2279* 32001 Atg8a uuaAAGUGUG-UGUCUAUAAAuu | :| |: | | |||||| auaUAUAAAUAAAAUAUAUUUug 3 20 55 77 [dm3:X:10659414-10659436:-] 0.6181 126 0 -3.38 -0.1383 MIMAT0011789 dme-miR-2281 32001 Atg8a cguuaugacgucuaUGUCUAu |||||| uuuccccacaaaaaACAGAUc 2 8 336 356 [dm3:X:10659135-10659155:-] 0.5757 120 6 -6.54 -0.1050 MIMAT0011791 dme-miR-2283 32001 Atg8a uaacagcaUAAGUACUAUAAAAg || | ||||||| auauauaaAUAAAAUAUAUUUUg 2 16 55 77 [dm3:X:10659414-10659436:-] 0.6181 143 7 -1.48 -1.1668 MIMAT0011791 dme-miR-2283 32001 Atg8a uaACAGCAUAAGUACUAUAAAag |||: || | |||||| uuUGUUACUUUGCUAAUAUUUca 3 22 428 450 [dm3:X:10659041-10659063:-] 0.5757 133 0 -3.79 -0.2494 MIMAT0011791 dme-miR-2283 32001 Atg8a uaACAGCAUAAGUACUAUAAAAg |||: |:| | |||||| auUGUUAUGUGAACAUUAUUUUa 2 22 227 249 [dm3:X:10659242-10659264:-] 0.5757 125 6 -8.74 -0.2414 MIMAT0012196 dme-miR-2489 32001 Atg8a ugACGUUUAUGUUGUAUGUUAu | :| |||:|| ||| ||| aaUCUAUAUAUAA-AUAAAAUa 2 21 50 70 [dm3:X:10659421-10659441:-] 0.6181 130 0 -4.19 -0.1181 MIMAT0012199 dme-miR-2492 32001 Atg8a aaacuuucgagagcugUUUUGUa |||||| aaaaccgaaaacuacaAAAACAa 2 8 205 227 [dm3:X:10659264-10659286:-] 0.5757 120 6 -6.17 -0.2316 MIMAT0012215 dme-miR-2500 32001 Atg8a gacuccaGGUGUGUGU-UUUAGg || :|:||| ||||| gccccccCCCUAUACAGAAAUCu 2 16 32 54 [dm3:X:10659437-10659459:-] 0.5056 123 0 -12.41 -0.9726 MIMAT0012215 dme-miR-2500 32001 Atg8a gacuccaggUGUGUGUUUUAGg |:| |||||| | uauuauuaaAUAAACAAAAACc 2 14 559 580 [dm3:X:10658911-10658932:-] 0.5757 121 0 -7.58 -0.1880 MIMAT0000106 dme-miR-2a 32001 Atg8a cgaGUAGUUUCGACCGACAC-UAu || |||| :| ||||| || augCAACAAAAUU--CUGUGCAUa 2 21 481 502 [dm3:X:10658989-10659010:-] 0.5757 121 0 -11.39 -1.0352 MIMAT0000118 dme-miR-13a 32001 Atg8a ugaGUAGUUUUACCGACAC-UAu || |||||| ||||| || augCAACAAAAU-UCUGUGCAUa 2 20 481 502 [dm3:X:10658989-10659010:-] 0.5757 129 0 -13.74 -1.0507 MIMAT0000119 dme-miR-13b 32001 Atg8a ugagcaGUUUUACCGACAC-UAu |||||| ||||| || augcaaCAAAAU-UCUGUGCAUa 2 17 481 502 [dm3:X:10658989-10659010:-] 0.5757 122 0 -12.42 -1.0507 MIMAT0000319 dme-miR-263a 32001 Atg8a cacuuAAGAAGGUCACGGUAAUUg || | :| ||||||| cugcuUUGUGUCCUACCCAUUAAc 2 20 292 315 [dm3:X:10659176-10659199:-] 0.5757 143 7 -13.36 -0.4604 MIMAT0000332 dme-miR-274 32001 Atg8a uaaugggcaaucacagccaGUGUUUu |||||| cagggcaacaaaaaaaaucCACAAAa 2 8 182 207 [dm3:X:10659284-10659309:-] 0.5488 120 6 -11.22 -0.2272 MIMAT0000332 dme-miR-274 32001 Atg8a uaaugggcaaucacagccaGUGUUUu |||||| uuauuaaauaaacaaaaacCACAAAa 2 8 561 586 [dm3:X:10658905-10658930:-] 0.5757 120 6 -11.22 -0.5992 MIMAT0000347 dme-miR-283 32001 Atg8a ucuUAAUG-GUCGACUAUAAAu :|||| : ||| |||||| uuuGUUACUUUGCUAAUAUUUc 2 19 428 449 [dm3:X:10659042-10659063:-] 0.5757 133 6 -9.79 -0.1533 MIMAT0000347 dme-miR-283 32001 Atg8a ucuuaauggucgacUAUAAAu |||||| uauauaaauaaaauAUAUUUu 2 8 56 76 [dm3:X:10659415-10659435:-] 0.6181 120 6 -2.36 -0.1224 MIMAT0000348 dme-miR-284 32001 Atg8a guuAACGACCUUAGUUCAACGACUGAAGu ||||| ||| | | ||| ||| acuUUGCU--AAU-AUUUCAAUGAAUUCa 2 27 434 459 [dm3:X:10659032-10659057:-] 0.5757 121 0 -9.37 -0.1140 MIMAT0000399 dme-miR-308 32001 Atg8a gaGUGUCAUAUUAGGACAC-UAa ::|| | |||:||||| || gaUGCAACAAAAUUCUGUGCAUa 2 21 480 502 [dm3:X:10658989-10659011:-] 0.5757 128 0 -14.01 -1.0612 MIMAT0000409 dme-miR-317 32001 Atg8a ugaccUAUGGUGGUCGACACAAGu | | :|: :||||||: uaaauAAAAUAUAUUUUGUGUUUa 2 20 60 83 [dm3:X:10659408-10659431:-] 0.6181 127 0 -14.62 -0.1045 MIMAT0000411 dme-miR-2c 32001 Atg8a cggGUAGUUUCGACCGACAC-UAu || |||| :| ||||| || augCAACAAAAUU--CUGUGCAUa 2 21 481 502 [dm3:X:10658989-10659010:-] 0.5757 121 0 -11.26 -1.0352 MIMAT0005466 dme-miR-955 32001 Atg8a cugugaguuuggagacGUGCUAc |||||| uauuuuuuuuuuuauuCACGAUg 2 8 461 483 [dm3:X:10659008-10659030:-] 0.5757 120 6 -14.63 -0.2081 MIMAT0005492 dme-miR-976 32001 Atg8a cguaacuacuauugaUUAGGUu |||||| cagggcaacaaaaaaAAUCCAc 2 8 182 203 [dm3:X:10659288-10659309:-] 0.5488 120 6 -5.90 -0.1687 MIMAT0005504 dme-miR-987 32001 Atg8a guagUUAGGUCUGAU-AAAUGAAAu ||| | || |||||||| ugcgAAUGCUUUGUACUUUACUUUg 2 21 407 431 [dm3:X:10659060-10659084:-] 0.5757 151 7 -8.73 -0.9135 MIMAT0005516 dme-miR-252 32001 Atg8a gaGGACGC-CGUG-AUCAUGAAuc | |||| ::| | |||||| ucCGUGCGAAUGCUUUGUACUUua 3 21 403 426 [dm3:X:10659065-10659088:-] 0.5757 130 0 -17.03 -0.1060 MIMAT0005016 dme-miR-1003 32001 Atg8a gacacUUAUACAUUUACACUcu ||| ||| |||||| aaaacAAU-UGU-UAUGUGAac 3 18 221 240 [dm3:X:10659251-10659270:-] 0.5757 129 0 -6.75 -0.2256 MIMAT0005017 dme-miR-1004 32001 Atg8a gacacucccuuCACUACACUcu || |||||| caaaaacaauuGUUAUGUGAac 3 12 219 240 [dm3:X:10659251-10659272:-] 0.5757 127 0 -6.04 -0.2297 MIMAT0005027 dme-miR-1014 32001 Atg8a gacgUUUACUUUUACUUAAaa | || |||||||| gcuaAUAUUUCAAUGAAUUca 3 18 439 459 [dm3:X:10659032-10659052:-] 0.5757 133 0 -5.02 -0.3375

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Atg8a RAID00057307 dme-miR-987-5p miRNA MIMAT0005504 Atg8a mRNA 32001 Prediction 0.2202 Atg8a RAID00063695 dme-miR-1003-3p miRNA MIMAT0005016 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID00194891 dme-miR-2a-3p miRNA MIMAT0000106 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID00292411 dme-miR-252-5p miRNA MIMAT0005516 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID00308311 dme-miR-932-5p miRNA MIMAT0005479 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID00311342 dme-miR-263a-5p miRNA MIMAT0000319 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID00508560 dme-miR-13a-3p miRNA MIMAT0000118 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID00877250 dme-miR-283-5p miRNA MIMAT0000347 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID01255151 dme-miR-976-3p miRNA MIMAT0005492 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID02009880 dme-miR-317-3p miRNA MIMAT0000409 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID02146279 dme-miR-2c-3p miRNA MIMAT0000411 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID02337356 dme-miR-1004-3p miRNA MIMAT0005017 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID02486983 dme-miR-274-5p miRNA MIMAT0000332 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID02608741 dme-miR-1014-3p miRNA MIMAT0005027 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID02794095 dme-miR-13b-3p miRNA MIMAT0000119 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID03000518 dme-miR-284-3p miRNA MIMAT0000348 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID03177626 dme-miR-975-5p miRNA MIMAT0005491 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID03562263 dme-miR-973-5p miRNA MIMAT0005489 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID03756246 dme-miR-308-3p miRNA MIMAT0000399 Atg8a mRNA 32001 Prediction 0.1828 Atg8a RAID03812683 dme-miR-955-5p miRNA MIMAT0005466 Atg8a mRNA 32001 Prediction 0.1828