DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 32005 CG32676 ucaGCGUCCGAGGUGAAUUUA-UAAAu | ||| || ::| |:||| |||| acaCACAGACUAUGC-UGAAUGAUUUg 2 24 607 632 [dm3:X:10607800-10607825:-] 0.4984 129 0 -11.46 -0.4426 MIMAT0000388 dme-miR-303 32005 CG32676 uggucaaaggacacuUUGGAUUu ||||||| gcgauguggcgcuuuAACCUAAu 2 9 817 839 [dm3:X:10607593-10607615:-] 0.5348 140 7 -13.20 -0.3276 MIMAT0005509 dme-miR-991 32005 CG32676 ugaAAGGUUUGAUGUUGAAAUu | ::| ::| :||||||| uuaUGUUAUGUU-UAACUUUAa 2 20 756 776 [dm3:X:10607656-10607676:-] 0.5348 145 7 -7.21 -0.9229 MIMAT0005021 dme-miR-1008 32005 CG32676 acaUUUGUGUUUUUCGACAcu |||: |:| ||||||| cggAAAUUCGAUAAGCUGUua 3 19 298 318 [dm3:X:10608114-10608134:-] 0.5698 146 0 -12.05 -0.1361 MIMAT0005022 dme-miR-1009 32005 CG32676 gacUUUACAUUGUUAAAAACUCu || | | | || ||||||| uuuAACUUUUA-AACUUUUGAGu 2 21 1189 1210 [dm3:X:10607222-10607243:-] 0.4868 154 7 -6.86 -0.4163 MIMAT0005026 dme-miR-1013 32005 CG32676 gcucaagccguaUGAAAAUa ||||||| uaggcgaguuuaACUUUUAa 2 9 1181 1200 [dm3:X:10607232-10607251:-] 0.4868 140 7 -12.88 -1.0098 MIMAT0005028 dme-miR-1015 32005 CG32676 gacguucucucuacAGGGUCCu ||||||| auuuuuuguguacaUCCCAGGc 2 9 449 470 [dm3:X:10607962-10607983:-] 0.4925 140 7 -13.69 -0.3007 MIMAT0011784 dme-miR-2279* 32005 CG32676 uuAAAGUGUGUGUCUAU-AAAUu |||: : :|:| ||| |||| auUUUUUUUUAUAUAUACUUUAu 2 21 869 891 [dm3:X:10607541-10607563:-] 0.5093 124 0 -6.03 -0.7398 MIMAT0011787 dme-miR-2280* 32005 CG32676 agucaaucgaaccuUCAUUUAa ||||||| uucaauaaauguuuAGUAAAUg 2 9 1255 1276 [dm3:X:10607156-10607177:-] 0.5630 140 7 -4.95 -0.8806 MIMAT0011787 dme-miR-2280* 32005 CG32676 agucaaucgaaccuuCAUUUAa |||||| uccuuuaauguuuuuGUAAAUu 2 8 415 436 [dm3:X:10607996-10608017:-] 0.5057 120 6 -4.80 -0.1049 MIMAT0012201 dme-miR-2493 32005 CG32676 ugcGGAGCGUGUUUAUGUGUGCc :|| :|| || ||||||| aaaUCUAAUAC-AACACACACGa 2 21 703 724 [dm3:X:10607708-10607729:-] 0.5165 154 7 -17.91 -0.7913 MIMAT0012202 dme-miR-2494* 32005 CG32676 aaggguuagaccacGUGAAUg |||||| ugcaauuaucauuaCACUUAu 2 8 1004 1024 [dm3:X:10607408-10607428:-] 0.4922 120 6 -10.39 -0.1017 MIMAT0012209 dme-miR-2497 32005 CG32676 gacGUUUGUAACAUUUACA-ACa |::| || | |||||| || gaaCGGAAAUAG-AAAUGUAUGa 2 20 527 548 [dm3:X:10607884-10607905:-] 0.4829 121 0 -8.72 -1.0895 MIMAT0012215 dme-miR-2500 32005 CG32676 gacucCAGGUGUGUGUUUUAGg | |: |:| |||||| aauuuGCCUUAAUAGAAAAUCg 2 18 837 858 [dm3:X:10607574-10607595:-] 0.5348 121 6 -9.84 -0.1365 MIMAT0000109 dme-miR-4 32005 CG32676 aguuACC--AACAGAUCGAAAUa ||| ||| | ||||||| caccUGGCUUUGGC-AGCUUUAu 2 18 738 759 [dm3:X:10607673-10607694:-] 0.5261 150 7 -11.49 -0.1596 MIMAT0000334 dme-miR-92a 32005 CG32676 uauccggcccuguucACGUUAc |||||| guuuucuauucauuuUGCAAUu 2 8 989 1010 [dm3:X:10607422-10607443:-] 0.4931 120 6 -4.73 -0.1013 MIMAT0000338 dme-miR-277 32005 CG32676 acAGCAUGGUCUAUCA-CGUAAAu |: | |:| | || |||||| cuUUAUCCUAUUUUGUAGCAUUUa 2 22 44 67 [dm3:X:10608365-10608388:-] 0.5296 121 6 -9.77 -0.7457 MIMAT0000351 dme-miR-124 32005 CG32676 gaACCGU--AAGUGG--CGCACGGAAu ||||: || ||| : |||||| ugUGGCGCUUUAACCUAAUUUGCCUUa 2 22 821 847 [dm3:X:10607585-10607611:-] 0.5348 123 6 -19.31 -0.1289 MIMAT0000358 dme-miR-92b 32005 CG32676 cguccggcccugaucACGUUAa |||||| guuuucuauucauuuUGCAAUu 2 8 989 1010 [dm3:X:10607422-10607443:-] 0.4931 120 6 -5.35 -0.1013 MIMAT0000402 dme-miR-310 32005 CG32676 uuuccggcccuucacACGUUAu |||||| guuuucuauucauuuUGCAAUu 2 8 989 1010 [dm3:X:10607422-10607443:-] 0.4931 120 6 -4.62 -0.1013 MIMAT0000407 dme-miR-315 32005 CG32676 cgAAAGACU-CGUUG-UUAGUUUu |||: || || | ||||||| aaUUUUAGAUACACCAAAUCAAAu 2 21 683 706 [dm3:X:10607726-10607749:-] 0.5102 154 7 -6.24 -0.6273 MIMAT0005476 dme-miR-962 32005 CG32676 cuGUCGUA-GUUAA-AGAGAUG-GAAUa || : | ||||| || :||| |||| uuCAUUUUGCAAUUAUCAUUACACUUAu 2 24 997 1024 [dm3:X:10607408-10607435:-] 0.4922 129 0 -12.39 -1.0604 MIMAT0005476 dme-miR-962 32005 CG32676 cugUCG-UAGUUAAAGA-----GAUG-GAAUa ||| ||:| |||:| |||| |||| ccaAGCAAUUACUUUUUUUGUCCUACACUUAc 2 23 1115 1146 [dm3:X:10607286-10607317:-] 0.5172 124 0 -11.84 -0.9999 MIMAT0005484 dme-miR-968 32005 CG32676 guugggaaauuaccuaUGAUGAAu ||||||| ccucgugugcaccacaACUACUUg 2 9 1229 1252 [dm3:X:10607180-10607203:-] 0.5105 140 7 -13.03 -0.5100 MIMAT0005487 dme-miR-971 32005 CG32676 agugaCAU-UCUUCAUUGUGGUu ||: | || ||||||| aguuaGUGCAUAA-CAACACCAa 2 18 204 225 [dm3:X:10608207-10608228:-] 0.5013 142 7 -11.87 -0.6701 MIMAT0005487 dme-miR-971 32005 CG32676 agugacauucuucauUGUGGUu |||||| gauuuaauuuuagauACACCAa 2 8 678 699 [dm3:X:10607733-10607754:-] 0.5102 120 6 -11.32 -0.1862 MIMAT0005496 dme-miR-980 32005 CG32676 auucgGGAAGUGUUCCGUCGAu ||| : ||||||| acacaCCUGGCUUUGGCAGCUu 2 18 735 756 [dm3:X:10607676-10607697:-] 0.5261 141 7 -18.24 -0.8116 MIMAT0005504 dme-miR-987 32005 CG32676 guAGUUAGGUCUGAUAAAUGAAAu |:|| || | | ||||||| auUUAAGCCCAAGCAAUUACUUUu 2 23 1107 1130 [dm3:X:10607302-10607325:-] 0.5172 158 7 -8.93 -0.8849 MIMAT0005504 dme-miR-987 32005 CG32676 guaguuaggucugAUAAAUGAAAu ||| |||||| cuauuuuuuuuuaUAUAUACUUUa 2 12 867 890 [dm3:X:10607542-10607565:-] 0.5093 123 6 -7.80 -0.1068 MIMAT0005507 dme-miR-137 32005 CG32676 gaugcACAUAAGAGUUCGUUAu | || | |||||||| uuuaaUUUAAGCCCAAGCAAUu 2 18 1103 1124 [dm3:X:10607308-10607329:-] 0.5172 153 7 -10.18 -0.4965 MIMAT0005027 dme-miR-1014 32005 CG32676 gacGUUUACU--UUUACUUAAAa |:|: || || ||||||| agaCGAGCGACGAAUUGAAUUUu 2 19 924 946 [dm3:X:10607486-10607508:-] 0.4613 153 7 -10.96 -0.3346 MIMAT0005027 dme-miR-1014 32005 CG32676 gaCGUUUACUUUUA-CUUAAAa |:||| ||||| |||||| ugGUAAACUAAAAUGGAAUUUa 2 20 656 677 [dm3:X:10607755-10607776:-] 0.5102 139 6 -10.82 -1.0264

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG32676 RAID00025175 dme-miR-315-5p miRNA MIMAT0000407 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID00183106 dme-miR-313-3p miRNA MIMAT0000405 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID00195934 dme-miR-1009-3p miRNA MIMAT0005022 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID00434986 dme-miR-971-3p miRNA MIMAT0005487 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID00525256 dme-miR-957-3p miRNA MIMAT0005470 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID00729613 dme-miR-92a-3p miRNA MIMAT0000334 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID00981289 dme-miR-1017-3p miRNA MIMAT0005030 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID01193242 dme-miR-932-5p miRNA MIMAT0005479 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID01316875 dme-miR-277-3p miRNA MIMAT0000338 CG32676 mRNA 32005 Prediction 0.2381 CG32676 RAID01479522 dme-miR-79-3p miRNA MIMAT0000352 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID01631581 dme-miR-980-3p miRNA MIMAT0005496 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID01691931 dme-miR-968-5p miRNA MIMAT0005484 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID01712749 dme-miR-124-3p miRNA MIMAT0000351 CG32676 mRNA 32005 Prediction 0.2455 CG32676 RAID01753040 dme-miR-284-3p miRNA MIMAT0000348 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID02050439 dme-miR-1006-3p miRNA MIMAT0005019 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID02118336 dme-miR-962-5p miRNA MIMAT0005476 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID02373274 dme-miR-1013-3p miRNA MIMAT0005026 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID02625159 dme-miR-991-3p miRNA MIMAT0005509 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID02802138 dme-miR-1014-3p miRNA MIMAT0005027 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID02910898 dme-miR-310-3p miRNA MIMAT0000402 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID03242698 dme-miR-1015-3p miRNA MIMAT0005028 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID03287779 dme-miR-137-3p miRNA MIMAT0005507 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID03358963 dme-miR-311-3p miRNA MIMAT0000403 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID03397469 dme-miR-33-5p miRNA MIMAT0000342 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID03429363 dme-miR-987-5p miRNA MIMAT0005504 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID03562110 dme-miR-4-3p miRNA MIMAT0000109 CG32676 mRNA 32005 Prediction 0.2381 CG32676 RAID03782882 dme-miR-312-3p miRNA MIMAT0000404 CG32676 mRNA 32005 Prediction 0.1828 CG32676 RAID03905586 dme-miR-92b-3p miRNA MIMAT0000358 CG32676 mRNA 32005 Prediction 0.2202 CG32676 RAID03955422 dme-miR-992-3p miRNA MIMAT0005510 CG32676 mRNA 32005 Prediction 0.1828