DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 318231 Sdic3 auaguaaaGUAUACGUUGC----AUUUAUgu | ||| :|||| |||||| uagcgaagCCUAUUUAACGAGAUUAAAUAaa 3 20 600 630 [dm3:X:20083511-20083541:-] 0.6013 134 0 -9.17 -0.2124 MIMAT0000360 dme-miR-287 318231 Sdic3 cacguuugcuaaaaGUUGUGu |||||| gggcaggcugaaagCAACACa 2 8 445 465 [dm3:X:20083676-20083696:-] 0.5457 120 6 -18.95 -0.2000 MIMAT0005464 dme-miR-iab-4as-3p 318231 Sdic3 auUUGCAUAUG-ACUUACAUAGg |:| | |: | |||||||: agAGCCCAAAUGUAAAUGUAUUa 2 21 577 599 [dm3:X:20083542-20083564:-] 0.6282 135 0 -10.09 -0.1508 MIMAT0005464 dme-miR-iab-4as-3p 318231 Sdic3 auUUGCAUAUGACUUACAUAGg ||: |:||:| |||||| uuAAUUUGUAUU-UUUGUAUCu 2 21 75 95 [dm3:X:20084046-20084066:-] 0.5430 126 6 -10.66 -0.1129 MIMAT0005495 dme-miR-979 318231 Sdic3 aaUCGGACUCAAGCCCUU-CUu ||: |:| |:||||| || gaAGUGGGGGCUUGGGAAUGAa 2 20 514 535 [dm3:X:20083606-20083627:-] 0.5462 123 0 -19.66 -0.3090 MIMAT0005499 dme-miR-983 318231 Sdic3 agUAAU-CAAGCU-UUGCAUAAUa |||| | | | ||||||||| auAUUAUAUACAACAACGUAUUAa 2 21 485 508 [dm3:X:20083633-20083656:-] 0.5460 158 7 -9.48 -0.9417 MIMAT0012196 dme-miR-2489 318231 Sdic3 ugACG-UUUAUGUUGUAUGUUau ||| | |||: |:|||||| aaUGCUACAUAUUAUAUACAAca 3 21 477 499 [dm3:X:20083642-20083664:-] 0.5457 147 0 -10.90 -0.1139 MIMAT0000105 dme-miR-1 318231 Sdic3 gaGGUAUGAAGAAAUGUAAGGu | ||| || || |||||| cuCAAUA-UUGGUUUCAUUCCa 2 21 250 270 [dm3:X:20083871-20083891:-] 0.5289 130 6 -17.51 -0.1349 MIMAT0000111 dme-miR-6 318231 Sdic3 uuuuucuuGUCGGUGACAC-UAu | ||:|||||| || uugugaucCCGCUACUGUGUAUa 2 15 97 119 [dm3:X:20084022-20084044:-] 0.5430 122 0 -14.99 -0.3391 MIMAT0000334 dme-miR-92a 318231 Sdic3 uauccggcccUGUUCACGUUac |: ||||||| uugauuuuaaAUUAGUGCAAcu 3 13 381 402 [dm3:X:20083739-20083760:-] 0.5457 128 0 -7.62 -0.1155 MIMAT0000342 dme-miR-33 318231 Sdic3 guuacgcuGAUGU-UACGUGGa |||:| || |||| cauaauauCUAUAUAUACACCu 2 14 631 652 [dm3:X:20083489-20083510:-] 0.5431 120 0 -11.41 -0.2014 MIMAT0000358 dme-miR-92b 318231 Sdic3 cguccggcccUGAUCACGUUaa |:|||||||| uugauuuuaaAUUAGUGCAAcu 3 13 381 402 [dm3:X:20083739-20083760:-] 0.5457 136 0 -11.64 -0.1155 MIMAT0000390 dme-miR-304 318231 Sdic3 gaguguaaauguuuaaCUCUAAu |||||| gcgaagccuauuuaacGAGAUUa 2 8 602 624 [dm3:X:20083517-20083539:-] 0.6013 120 6 -10.05 -0.5308 MIMAT0000402 dme-miR-310 318231 Sdic3 uuuccggcccUUCA-CACGUUau || | |||||| cuugauuuuaAAUUAGUGCAAcu 3 13 380 402 [dm3:X:20083739-20083761:-] 0.5457 123 0 -6.45 -0.1155 MIMAT0000403 dme-miR-311 318231 Sdic3 aguccggccACUUA--CACGUUau | ||| |||||| acuugauuuUAAAUUAGUGCAAcu 3 14 379 402 [dm3:X:20083739-20083762:-] 0.5457 124 0 -6.45 -0.1143 MIMAT0000404 dme-miR-312 318231 Sdic3 aguccggcagaguUCACGUUau ||||||| uugauuuuaaauuAGUGCAAcu 3 10 381 402 [dm3:X:20083739-20083760:-] 0.5457 125 0 -9.01 -0.1143 MIMAT0000405 dme-miR-313 318231 Sdic3 agccCGACACUUU--UCACGUUau | | | ||| ||||||| acuuGAUUUUAAAUUAGUGCAAcu 3 19 379 402 [dm3:X:20083739-20083762:-] 0.5457 133 0 -8.60 -0.1109 MIMAT0005467 dme-miR-190 318231 Sdic3 guUGGUUCUUAUAGUUUGUAUAGa |: || | || ||||||: aaAUAAAUUAAAUGCUACAUAUUa 2 23 467 490 [dm3:X:20083651-20083674:-] 0.5457 134 0 -5.21 -0.2354 MIMAT0005470 dme-miR-957 318231 Sdic3 cgGAGUCAAAACCUGCCAAAGu |||| | | :|||||| uaCUCAAUAU----UGGUUUCa 2 21 248 265 [dm3:X:20083876-20083893:-] 0.5289 127 6 -14.59 -0.1539 MIMAT0005485 dme-miR-969 318231 Sdic3 uuUUGAACGA---AUCACC-UUGAg ||:||| | |:|||| |||| gaAAUUUGAUUGGUGGUGGUAACUg 2 20 335 359 [dm3:X:20083782-20083806:-] 0.5275 126 0 -16.94 -0.6255 MIMAT0005493 dme-miR-977 318231 Sdic3 aaucugUUGCACUUAUAGAgu ||| | ||||||| uaaauaAACAU-AAUAUCUau 3 16 623 642 [dm3:X:20083499-20083518:-] 0.5744 133 0 -6.53 -0.3536 MIMAT0005497 dme-miR-981 318231 Sdic3 acGUCCAAAGCA-GCUGUUGCuu || || : | | |||||| uaCAUAUUAUAUACAACAACGua 3 21 482 504 [dm3:X:20083637-20083659:-] 0.5460 127 0 -8.35 -0.1264 MIMAT0005512 dme-miR-993 318231 Sdic3 ucUAUGGACAUCUCUGCUCGAAg | :||| | | ||||| || cgAAGCCUAUUUA-ACGAGAUUa 2 22 603 624 [dm3:X:20083517-20083538:-] 0.6013 123 0 -11.05 -0.1002 MIMAT0005519 dme-miR-999 318231 Sdic3 ucugugucagaAUGUCAAUUGu ||:||||||| ------gacgaUAUAGUUAACu 2 12 1 16 [dm3:X:20084125-20084140:-] 0.6232 151 7 -12.62 -1.1160

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sdic3 RAID00025262 dme-miR-969-5p miRNA MIMAT0005485 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID00248580 dme-miR-957-3p miRNA MIMAT0005470 Sdic3 mRNA 318231 Prediction 0.2202 Sdic3 RAID00478537 dme-miR-993-3p miRNA MIMAT0005512 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID00488080 dme-miR-977-3p miRNA MIMAT0005493 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID00586208 dme-miR-999-3p miRNA MIMAT0005519 Sdic3 mRNA 318231 Prediction 0.2202 Sdic3 RAID01528908 dme-miR-92b-3p miRNA MIMAT0000358 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID01777214 dme-miR-33-5p miRNA MIMAT0000342 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID01839906 dme-miR-92a-3p miRNA MIMAT0000334 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID02017261 dme-miR-963-5p miRNA MIMAT0005477 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID02390269 dme-miR-310-3p miRNA MIMAT0000402 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID02679479 dme-miR-311-3p miRNA MIMAT0000403 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID02743977 dme-miR-277-3p miRNA MIMAT0000338 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID02896666 dme-miR-190-5p miRNA MIMAT0005467 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID02946504 dme-miR-304-5p miRNA MIMAT0000390 Sdic3 mRNA 318231 Prediction 0.2202 Sdic3 RAID02963878 dme-miR-312-3p miRNA MIMAT0000404 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID03247731 dme-miR-313-3p miRNA MIMAT0000405 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID03296552 dme-miR-6-3p miRNA MIMAT0000111 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID03837086 dme-miR-981-3p miRNA MIMAT0005497 Sdic3 mRNA 318231 Prediction 0.1828 Sdic3 RAID03954712 dme-miR-1-3p miRNA MIMAT0000105 Sdic3 mRNA 318231 Prediction 0.2202