DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 42467 Synd ucagcgucCGAGGUGAAUUUAUAAAu |: ::|: | ||||||| aauuaauuGUAUUAUGU-AAUAUUUa 2 19 410 434 [dm3:3R:16665529-16665553:+] 0.5960 144 7 -7.95 -1.2256 MIMAT0000388 dme-miR-303 42467 Synd ugGUCAAAGGACACUUUGGAUUu || |||: | :|||||| uaCAUUUUUAAAU--GACCUAAa 2 22 671 691 [dm3:3R:16665790-16665810:+] 0.5960 130 6 -11.37 -0.6955 MIMAT0005464 dme-miR-iab-4as-3p 42467 Synd auuUGCAUAUGACUUACAUAgg |: |||:|| |||||| aauAUUUAUGCU--AUGUAUaa 3 20 427 446 [dm3:3R:16665546-16665565:+] 0.5960 136 0 -8.08 -0.1524 MIMAT0005464 dme-miR-iab-4as-3p 42467 Synd auuugcaUAUGACUUACAUAGg |||| ||||||: aauuaccAUAC-AUAUGUAUUa 2 16 130 150 [dm3:3R:16665249-16665269:+] 0.6328 129 0 -7.44 -0.1982 MIMAT0005488 dme-miR-972 42467 Synd cgGAUUUAUAAGCAUAACAUGu :|| | ||| ||||||: caUUACAAAUU--AAUUGUAUu 2 21 403 422 [dm3:3R:16665522-16665541:+] 0.5698 133 0 -5.78 -0.1248 MIMAT0005489 dme-miR-973 42467 Synd uuuuagcuuCAAGUUGG-UGGUUGGu | ||| || ||||||| accgauaccGAUCAUCCAACCAACCu 2 17 249 274 [dm3:3R:16665368-16665393:+] 0.5133 155 7 -22.48 -0.6502 MIMAT0005495 dme-miR-979 42467 Synd aauCGGACUCAAGCCCUUCUu || | || ||||||| ---GCGGGCGUAGGGGAAGAa 2 19 1 18 [dm3:3R:16665120-16665137:+] 0.4315 150 7 -16.03 -0.4753 MIMAT0005499 dme-miR-983 42467 Synd agUAAU-CAAGCUUUGCAUAAUa |||| | | |:|||||| aaAUUACCAUACAUAUGUAUUAg 2 21 129 151 [dm3:3R:16665248-16665270:+] 0.6328 135 6 -6.19 -0.2316 MIMAT0005499 dme-miR-983 42467 Synd aguaaucaagcUUUGCAUAAUa || :|||||| cauuacaaauuAAUUGUAUUAu 2 12 403 424 [dm3:3R:16665522-16665543:+] 0.5698 131 6 -8.48 -0.1655 MIMAT0005502 dme-miR-985 42467 Synd acgggcugguaACCUUGUAAAc |||||||||| uaaugcguuucUGGAACAUUUu 2 12 592 613 [dm3:3R:16665711-16665732:+] 0.5960 155 7 -14.57 -0.8462 MIMAT0005502 dme-miR-985 42467 Synd acgggcugguaaccuUGUAAAc |||||| guauacuguaaauguACAUUUu 2 8 657 678 [dm3:3R:16665776-16665797:+] 0.5960 120 6 -7.06 -0.1708 MIMAT0005026 dme-miR-1013 42467 Synd gcuCAAGCCGUAU-GAAAAUa || | |:| | |||||| ucuGUGCCGUAAACCUUUUAu 2 18 506 526 [dm3:3R:16665625-16665645:+] 0.5960 121 6 -7.45 -0.2064 MIMAT0011784 dme-miR-2279* 42467 Synd uuAAAGU-GUGUGUCUAUAAAUu || :| :|:::| ||||||| aaUUGUAUUAUGUA-AUAUUUAu 2 21 414 435 [dm3:3R:16665533-16665554:+] 0.5960 149 7 -5.30 -1.0790 MIMAT0011784 dme-miR-2279* 42467 Synd uuaaagugugugucUAUAAAUu ||||||| gcguaguuuuuggcAUAUUUAg 2 9 547 568 [dm3:3R:16665666-16665687:+] 0.5960 140 7 -7.37 -0.3406 MIMAT0011784 dme-miR-2279* 42467 Synd uuaaagugugugucuAUAAAUu |||||| uggaacauuuuauauUAUUUAu 2 8 603 624 [dm3:3R:16665722-16665743:+] 0.5960 120 6 -5.45 -0.1087 MIMAT0011788 dme-miR-2281* 42467 Synd aacgUAGACGUCGACGUC-UAUUa || ||:| ||||| |||| gcagAUAUGUAUAUGCAGCAUAAc 2 20 49 72 [dm3:3R:16665168-16665191:+] 0.4315 131 0 -13.64 -0.1662 MIMAT0012196 dme-miR-2489 42467 Synd ugACGUUUAUGUUGUAUGU-UAu || ||| :| |||||| || gaUGAAAAAUUACCAUACAUAUg 2 21 123 145 [dm3:3R:16665242-16665264:+] 0.6328 128 0 -7.23 -1.1697 MIMAT0012199 dme-miR-2492 42467 Synd aaacuuucgagagcuGUUUUGua |||||| aaauaaaaaaaaaacCAAAACcc 3 9 698 720 [dm3:3R:16665817-16665839:+] 0.5960 120 0 -3.34 -0.1467 MIMAT0012216 dme-miR-2501 42467 Synd aaUCGGGUCCGUGAGGUUUGAAUg || : | || |||||||| gcAGAUAUGUAACAGCAAACUUAg 2 23 330 353 [dm3:3R:16665449-16665472:+] 0.5436 150 7 -11.07 -0.1782 MIMAT0000335 dme-miR-219 42467 Synd guUCUUAACGCAAACCU-GUUAGu |||| | :||| || ||||| uuAGAAAU-UGUUAUGAGCAAUCg 2 22 148 170 [dm3:3R:16665267-16665289:+] 0.6328 127 0 -13.64 -0.8209 MIMAT0000347 dme-miR-283 42467 Synd ucUUA--AUGGUCGACUAUAAAu ||| ||::| | |||||| uuAAUUGUAUUAUGUAAUAUUUa 2 20 412 434 [dm3:3R:16665531-16665553:+] 0.5960 126 6 -5.71 -0.1952 MIMAT0000395 dme-miR-9b 42467 Synd guAUGUCGAUUUUAGUGGUU-UCu ||| | || ||||||| || ccUACCAAUCAACUCACCAACAGu 2 22 272 295 [dm3:3R:16665391-16665414:+] 0.5133 129 0 -9.61 -0.3142 MIMAT0005463 dme-miR-iab-4as-5p 42467 Synd gcCAUAUGGAAGUCAUAUG-CAUu | ||| ||:|| |||| ||| ugGCAUA--UUUAG-AUACUGUAc 2 22 557 577 [dm3:3R:16665676-16665696:+] 0.5960 120 0 -10.70 -0.8761 MIMAT0005463 dme-miR-iab-4as-5p 42467 Synd gcCAU-AUGGAAGUCAUAUG-CAUu ||: |: || |||||| ||| acGUGUUGGAUUAUGUAUACUGUAa 2 22 643 667 [dm3:3R:16665762-16665786:+] 0.5960 120 0 -13.79 -1.1779 MIMAT0005467 dme-miR-190 42467 Synd guUGGUUCUU-AUAGUUUGUAUAga |: || || || || |||||| ugAUGAAAAAUUACCAUACAUAUgu 3 23 122 146 [dm3:3R:16665241-16665265:+] 0.6328 145 0 -7.04 -0.1525 MIMAT0005516 dme-miR-252 42467 Synd gaGGACGCCGUGAUCAUGAAUc |:||| :|:| ||||||| cgCUUGCACUAUUCGUACUUAu 2 21 169 190 [dm3:3R:16665288-16665309:+] 0.5977 164 7 -16.41 -0.2791

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Synd RAID00120200 dme-miR-979-3p miRNA MIMAT0005495 Synd mRNA 42467 Prediction 0.1828 Synd RAID01731145 dme-miR-263b-5p miRNA MIMAT0000362 Synd mRNA 42467 Prediction 0.1828 Synd RAID01821892 dme-miR-9b-5p miRNA MIMAT0000395 Synd mRNA 42467 Prediction 0.1828 Synd RAID02153360 dme-miR-190-5p miRNA MIMAT0005467 Synd mRNA 42467 Prediction 0.1828 Synd RAID02350358 dme-miR-985-3p miRNA MIMAT0005502 Synd mRNA 42467 Prediction 0.1828 Synd RAID02923062 dme-miR-252-5p miRNA MIMAT0005516 Synd mRNA 42467 Prediction 0.2202 Synd RAID03105911 dme-miR-1000-5p miRNA MIMAT0005520 Synd mRNA 42467 Prediction 0.2202 Synd RAID03250113 dme-miR-973-5p miRNA MIMAT0005489 Synd mRNA 42467 Prediction 0.1828 Synd RAID03579414 dme-miR-283-5p miRNA MIMAT0000347 Synd mRNA 42467 Prediction 0.1828 Synd RAID03612480 dme-miR-iab-8-5p miRNA MIMAT0005463 Synd mRNA 42467 Prediction 0.1828 Synd RAID03940787 dme-miR-219-5p miRNA MIMAT0000335 Synd mRNA 42467 Prediction 0.1828