DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 40252 CG33969 auaguaaaguauacguUGC-AUUUAUGu ||| ||||||| aagccgagaaagaauuACGAUAAAUACc 2 12 700 727 [dm3:3L:20384418-20384445:-] 0.5070 146 7 -8.85 -0.2520 MIMAT0005464 dme-miR-iab-4as-3p 40252 CG33969 auuUGCAUAUGACUUACAUAgg || || | | |||||| uccACUUAAA--GCAUGUAUaa 3 20 334 353 [dm3:3L:20384792-20384811:-] 0.5214 128 0 -4.83 -0.1782 MIMAT0005464 dme-miR-iab-4as-3p 40252 CG33969 auuugcauaugacuuACAUAGg |||||| gucuuguuuuuaaacUGUAUCa 2 8 235 256 [dm3:3L:20384889-20384910:-] 0.4816 120 6 -7.32 -0.1921 MIMAT0005481 dme-miR-966 40252 CG33969 gguGUGUCGGGUGUUGGGUGu |||| : |:||||||: --uCACAUUGGAUAACCCAUa 2 19 1 19 [dm3:3L:20385126-20385144:-] 0.4395 142 0 -19.63 -0.1564 MIMAT0005482 dme-miR-967 40252 CG33969 gcGAAGAGGUCUCCAUAGAGa | |||:: | ||||||| cgCGUCUUUUG-CGUAUCUCg 2 20 2099 2118 [dm3:3L:20383027-20383046:-] 0.7822 149 7 -16.89 -0.4197 MIMAT0005488 dme-miR-972 40252 CG33969 cggauuuauAAGCAUAACA-UGu ||| |||||| || uuguccaccUUCCUAUUGUCACc 2 14 1480 1502 [dm3:3L:20383643-20383665:-] 0.7272 121 0 -8.65 -0.4489 MIMAT0005495 dme-miR-979 40252 CG33969 aaucggAC-UCAAGCC-CUUCUu || || |||| ||||| cgauuaUGCAGAUCGGCGAAGAg 2 16 1876 1898 [dm3:3L:20383247-20383269:-] 0.6016 122 0 -16.96 -0.1474 MIMAT0005509 dme-miR-991 40252 CG33969 ugaaAGG--UUUGAUGUUGAAAUu ||| ||| | ||||||| uggaUCCUAAAAAGAAAACUUUAa 2 19 306 329 [dm3:3L:20384816-20384839:-] 0.5214 153 7 -10.70 -0.9283 MIMAT0005509 dme-miR-991 40252 CG33969 ugaaAGG--UUUGAUGUUGAAAUu ||| ||| | ||||||| uggaUCCUAAAAAGAAAACUUUAa 2 19 306 329 [dm3:3L:20384816-20384839:-] 0.5214 153 7 -10.70 -1.2210 MIMAT0005022 dme-miR-1009 40252 CG33969 gacuuuACAUUGUUAAAA-ACUCu |||||:| |||| |||| aguauuUGUAAUACUUUUCUGAGa 2 18 456 479 [dm3:3L:20384666-20384689:-] 0.5070 137 0 -13.18 -0.5478 MIMAT0005026 dme-miR-1013 40252 CG33969 gcucaaGCCGUAUGAAAAUa || :| ||||||| guugcgCGCUAGACUUUUAa 2 15 419 438 [dm3:3L:20384707-20384726:-] 0.5214 150 7 -10.75 -0.3630 MIMAT0011787 dme-miR-2280* 40252 CG33969 agUCAAUCGAACCUUCAUU-UAa || |||| ||| ||||| || gaAGAUAGCGUGGUAGUAACAUa 2 21 529 551 [dm3:3L:20384594-20384616:-] 0.5070 140 0 -13.03 -0.2353 MIMAT0012202 dme-miR-2494* 40252 CG33969 aaggguuagaccacGUGAAUg |||||| aacuuuaaaacaucCACUUAa 2 8 322 342 [dm3:3L:20384803-20384823:-] 0.5214 120 6 -8.79 -0.1938 MIMAT0012216 dme-miR-2501 40252 CG33969 aaucggguccgugaggUUUGAAug |||||| uuggauccuaaaaagaAAACUUua 3 9 305 328 [dm3:3L:20384817-20384840:-] 0.5214 120 0 -7.89 -0.1373 MIMAT0000106 dme-miR-2a 40252 CG33969 cgaGUAGUUUCGACCGAC-ACUAu |||: ||| || ||| |||| auaCAUUCAAGAUGUCUGCUGAUu 2 21 82 105 [dm3:3L:20385040-20385063:-] 0.4771 136 0 -14.11 -0.1355 MIMAT0000106 dme-miR-2a 40252 CG33969 cgaGUAGUUUCGACCGAC-ACUAu |||: ||| || ||| |||| auaCAUUCAAGAUGUCUGCUGAUu 2 21 82 105 [dm3:3L:20385040-20385063:-] 0.4771 136 0 -14.11 -0.3658 MIMAT0000107 dme-miR-2b 40252 CG33969 cgaGGAGUUUCGACCGAC-ACUAu | |: ||| || ||| |||| auaCAUUCAAGAUGUCUGCUGAUu 2 21 82 105 [dm3:3L:20385040-20385063:-] 0.4771 128 0 -13.42 -0.1355 MIMAT0000107 dme-miR-2b 40252 CG33969 cgaGGAGUUUCGACCGAC-ACUAu | |: ||| || ||| |||| auaCAUUCAAGAUGUCUGCUGAUu 2 21 82 105 [dm3:3L:20385040-20385063:-] 0.4771 128 0 -13.42 -0.3658 MIMAT0000113 dme-miR-8 40252 CG33969 cuGUAGAAAUGGACUG-UCAUAAu |:|:| || :|| | |||||| ugCGUUUCUA-UUGUCAAGUAUUu 2 22 440 462 [dm3:3L:20384683-20384705:-] 0.5142 127 6 -11.98 -0.3985 MIMAT0000114 dme-miR-9a 40252 CG33969 aguaUGUCGAUCUAUUGGUUUCu || || | | :||||||| augaACUGCGA-AGGACCAAAGu 2 20 731 752 [dm3:3L:20384393-20384414:-] 0.5070 153 7 -14.49 -0.1126 MIMAT0012531 dme-miR-10-3p 40252 CG33969 uuUGGAGAGAUC--UUGGCUUAAAc :| | || || ::||||||| gaGCGUGUCCAGCUCGUCGAAUUUa 2 22 1911 1935 [dm3:3L:20383210-20383234:-] 0.6016 148 7 -12.43 -0.2764 MIMAT0000118 dme-miR-13a 40252 CG33969 ugaGU-AGUUUUACCGAC-ACUAu || ||||:||| ||| |||| auaCAUUCAAGAUGUCUGCUGAUu 2 20 82 105 [dm3:3L:20385040-20385063:-] 0.4771 138 0 -18.18 -0.1328 MIMAT0000118 dme-miR-13a 40252 CG33969 ugaGU-AGUUUUACCGAC-ACUAu || ||||:||| ||| |||| auaCAUUCAAGAUGUCUGCUGAUu 2 20 82 105 [dm3:3L:20385040-20385063:-] 0.4771 138 0 -18.18 -0.3600 MIMAT0000119 dme-miR-13b 40252 CG33969 ugagcAGUUUUACCGAC-ACUAu ||||:||| ||| |||| uacauUCAAGAUGUCUGCUGAUu 2 18 83 105 [dm3:3L:20385040-20385062:-] 0.4771 137 0 -15.84 -0.1328 MIMAT0000119 dme-miR-13b 40252 CG33969 ugagcAGUUUUACCGAC-ACUAu ||||:||| ||| |||| uacauUCAAGAUGUCUGCUGAUu 2 18 83 105 [dm3:3L:20385040-20385062:-] 0.4771 137 0 -15.84 -0.3600 MIMAT0000332 dme-miR-274 40252 CG33969 uaaugggcaaucacagccaGUGUUUu |||||| cggaauuuuuuuagaauaaCACAAAc 2 8 160 185 [dm3:3L:20384960-20384985:-] 0.4771 120 6 -9.93 -0.1071 MIMAT0000338 dme-miR-277 40252 CG33969 acaGCAUGGUCUAUCACGUAAAu |||| | | ||||||| auaCGUA--AUUUCAUGCAUUUa 2 21 651 671 [dm3:3L:20384474-20384494:-] 0.5070 145 7 -12.76 -0.6975 MIMAT0000348 dme-miR-284 40252 CG33969 guUAAC--GACCUUAGUUCA-ACG-AC-UGAAGu |||| || ::|| | | | | || ||||| uuAUUGAUCUUAGGUCUACUGUACAUGCACUUCa 2 28 778 811 [dm3:3L:20384334-20384367:-] 0.5070 120 0 -12.99 -0.3124 MIMAT0000361 dme-miR-87 40252 CG33969 gugUGGACUUU-----AA-AACGAGUu |||||||| || ||||||| acgACCUGAAAUGGGUUUGUUGCUCAg 2 19 1155 1181 [dm3:3L:20383964-20383990:-] 0.5703 156 7 -23.59 -0.1521 MIMAT0000362 dme-miR-263b 40252 CG33969 cacuuaagaggguCACGGUUc ||||||| ccauauuaaaaauGUGCCAAa 2 9 15 35 [dm3:3L:20385110-20385130:-] 0.4395 140 7 -9.69 -1.1073 MIMAT0000362 dme-miR-263b 40252 CG33969 cacuuaagaggguCACGGUUc ||||||| ccauauuaaaaauGUGCCAAa 2 9 15 35 [dm3:3L:20385110-20385130:-] 0.4395 140 7 -9.69 -1.2145 MIMAT0000389 dme-miR-31b 40252 CG33969 guCGAUAA-GGCUGUAG-AACGGu || ||| || ::|| ||||| uuGCCAUUGCCAUUGUCAUUGCCu 2 21 755 778 [dm3:3L:20384367-20384390:-] 0.5070 123 0 -12.37 -0.4449 MIMAT0000391 dme-miR-305 40252 CG33969 gucuCGUGGACUACUUC-AUGUUa |::| | || ||| ||||| auuuGUGCGUCAUCAAGUUACAAc 2 20 674 697 [dm3:3L:20384448-20384471:-] 0.5070 127 0 -8.55 -0.5838 MIMAT0000392 dme-miR-9c 40252 CG33969 agaUGUCGAUCUUAUGGUUUCu || || | |: ||||||| ugaACUGCGA-AGGACCAAAGu 2 20 732 752 [dm3:3L:20384393-20384413:-] 0.5070 153 7 -16.69 -0.1126 MIMAT0000395 dme-miR-9b 40252 CG33969 guaUGUCGAUUUUAGUGGUUUCu || || ||:: ||||||| ugaACUGCGAAGG--ACCAAAGu 2 21 732 752 [dm3:3L:20384393-20384413:-] 0.5070 153 7 -15.37 -0.1031 MIMAT0000400 dme-miR-31a 40252 CG33969 aguCGAU-ACGGCUGUAG-AACGGu || | |||| ::|| ||||| auuGCCAUUGCCAUUGUCAUUGCCu 2 21 754 778 [dm3:3L:20384367-20384391:-] 0.5070 123 0 -15.37 -0.4384 MIMAT0000408 dme-miR-316 40252 CG33969 gcggucauucGCCUUUUUCUGu | |:||||||| ccucgugcucCAGGAAAAGACc 2 13 1045 1066 [dm3:3L:20384079-20384100:-] 0.7902 148 7 -12.87 -0.1806 MIMAT0000411 dme-miR-2c 40252 CG33969 cggGUAGUUUCGACCGAC-ACUAu |||: ||| || ||| |||| auaCAUUCAAGAUGUCUGCUGAUu 2 21 82 105 [dm3:3L:20385040-20385063:-] 0.4771 136 0 -13.98 -0.1355 MIMAT0000411 dme-miR-2c 40252 CG33969 cggGUAGUUUCGACCGAC-ACUAu |||: ||| || ||| |||| auaCAUUCAAGAUGUCUGCUGAUu 2 21 82 105 [dm3:3L:20385040-20385063:-] 0.4771 136 0 -13.98 -0.3658 MIMAT0005463 dme-miR-iab-4as-5p 40252 CG33969 gccAUAUGGAAGUCAUAUGCAUu | ||:| :| ||||||| cacUUUAUCCAUA-CAUACGUAa 2 21 637 658 [dm3:3L:20384487-20384508:-] 0.5070 146 7 -10.46 -0.6030 MIMAT0005468 dme-miR-193 40252 CG33969 caacccuGAAUCAUCCGGUCAu |||:|| ||||||| ugucaccCUUGGU-GGCCAGUu 2 16 1496 1516 [dm3:3L:20383629-20383649:-] 0.7272 157 7 -20.51 -0.1462 MIMAT0005476 dme-miR-962 40252 CG33969 cugucguaguuaaagagaUGGAAUa |||||| uuuuuuagaauaacacaaACCUUAa 2 8 166 190 [dm3:3L:20384955-20384979:-] 0.4771 120 6 -6.10 -0.1214 MIMAT0005477 dme-miR-963 40252 CG33969 cuuuguuGGACUAUAA--AUGGAACa :|||: || ||||||| cuucauuUCUGGCUUUGCUACCUUGa 2 18 1390 1415 [dm3:3L:20383730-20383755:-] 0.7272 148 7 -15.11 -0.1045 MIMAT0005478 dme-miR-964 40252 CG33969 uucAAUUCGAGGGGAUAAGAUu | || |: ||||||||| gaaUAAAUAUUACCUAUUCUAa 2 20 2167 2188 [dm3:3L:20382957-20382978:-] 0.4304 159 7 -14.18 -0.2407 MIMAT0005479 dme-miR-932 40252 CG33969 gaCGUUACGUGAUGCCUU-AACu |||| ||: || |||| ||| ugGCAA-GCGAUA-GGAAGUUGc 2 21 2039 2059 [dm3:3L:20383086-20383106:-] 0.7822 124 0 -14.75 -0.2865 MIMAT0005501 dme-miR-927 40252 CG33969 ccAUUUCGCAUCCUUAAGAUUu |||| || ||||||| aaUAAAUAUUACCUAUUCUAAg 2 21 2168 2189 [dm3:3L:20382956-20382977:-] 0.4304 152 7 -6.35 -0.1480 MIMAT0005514 dme-miR-995 40252 CG33969 uucggCUUAGUA---CACC-ACGAu ||||||| |||| |||| uaaaaGAAUCAUUAGGUGGAUGCUa 2 17 373 397 [dm3:3L:20384748-20384772:-] 0.5214 127 0 -19.43 -0.5841 MIMAT0005520 dme-miR-1000 40252 CG33969 ugacgacacuguccUGUUAUa |||||| uaacacaaaccuuaACAAUAa 2 8 176 196 [dm3:3L:20384949-20384969:-] 0.4771 120 6 -5.67 -0.1671 MIMAT0005019 dme-miR-1006 40252 CG33969 gauacuuauucuuUAGCUUAAAu :|||||||| gcguguccagcucGUCGAAUUUa 2 11 1913 1935 [dm3:3L:20383210-20383232:-] 0.6016 146 7 -12.19 -0.2836

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG33969 RAID00075231 dme-miR-11-3p miRNA MIMAT0000116 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID00388796 dme-miR-133-3p miRNA MIMAT0000340 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID00442311 dme-miR-13b-3p miRNA MIMAT0000119 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID00542747 dme-miR-316-5p miRNA MIMAT0000408 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID00745535 dme-miR-31b-5p miRNA MIMAT0000389 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID00939015 dme-miR-9a-5p miRNA MIMAT0000114 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID01220758 dme-miR-927-5p miRNA MIMAT0005501 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID01260053 dme-miR-932-5p miRNA MIMAT0005479 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID01352683 dme-miR-31a-5p miRNA MIMAT0000400 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID01365871 dme-miR-995-3p miRNA MIMAT0005514 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID01423966 dme-miR-277-3p miRNA MIMAT0000338 CG33969 mRNA 40252 Prediction 0.2455 CG33969 RAID01615708 dme-miR-10-3p miRNA MIMAT0012531 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID01626688 dme-miR-1000-5p miRNA MIMAT0005520 CG33969 mRNA 40252 Prediction 0.2202 CG33969 RAID01756560 dme-miR-124-3p miRNA MIMAT0000351 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID01844749 dme-miR-284-3p miRNA MIMAT0000348 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02147746 dme-miR-1006-3p miRNA MIMAT0005019 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02210395 dme-miR-962-5p miRNA MIMAT0005476 CG33969 mRNA 40252 Prediction 0.2202 CG33969 RAID02270163 dme-miR-8-3p miRNA MIMAT0000113 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02349503 dme-miR-2a-3p miRNA MIMAT0000106 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02355179 dme-miR-87-3p miRNA MIMAT0000361 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02463599 dme-miR-1013-3p miRNA MIMAT0005026 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02478857 dme-miR-263b-5p miRNA MIMAT0000362 CG33969 mRNA 40252 Prediction 0.2202 CG33969 RAID02643032 dme-miR-963-5p miRNA MIMAT0005477 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02680031 dme-miR-iab-8-5p miRNA MIMAT0005463 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02723719 dme-miR-991-3p miRNA MIMAT0005509 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02790106 dme-miR-2b-3p miRNA MIMAT0000107 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02839872 dme-miR-9b-5p miRNA MIMAT0000395 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02929970 dme-miR-274-5p miRNA MIMAT0000332 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID02983037 dme-mir-13b-1 miRNA MI0000134 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID03033575 dme-miR-2c-3p miRNA MIMAT0000411 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID03083608 dme-miR-964-5p miRNA MIMAT0005478 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID03084019 dme-miR-9c-5p miRNA MIMAT0000392 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID03085723 dme-mir-2a-1 miRNA MI0000117 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID03453595 dme-miR-305-5p miRNA MIMAT0000391 CG33969 mRNA 40252 Prediction 0.2202 CG33969 RAID03921131 dme-miR-306-5p miRNA MIMAT0000393 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID04014931 dme-miR-193-3p miRNA MIMAT0005468 CG33969 mRNA 40252 Prediction 0.1828 CG33969 RAID04062893 dme-miR-13a-3p miRNA MIMAT0000118 CG33969 mRNA 40252 Prediction 0.1828