DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 3355079 CG40045 auaGUAAAGUAUAC--GUUGCAUUUAUGu || || | | | :||| ||||||: auaCA-UUAAAAGGAUUAACUUAAAUAUg 2 25 42 69 [dm3:3L:24028931-24028958:+] 0.7085 141 0 -7.65 -0.2623 MIMAT0000364 dme-miR-289 3355079 CG40045 ucagcgUCCGAGGUGAAUUUAUAAAu ||| |: |||||||||| | auuaaaAGGAUUAACUUAAAUAUGUa 2 21 46 71 [dm3:3L:24028935-24028960:+] 0.7085 148 0 -14.46 -0.5426 MIMAT0000364 dme-miR-289 3355079 CG40045 ucaGCGUCCGAGGUGAAUUUAUAAAu | |: || :|:||: |||||| cggCCCGCCCUAUAUUUGUAUAUUUa 2 24 3 28 [dm3:3L:24028892-24028917:+] 0.7085 135 6 -13.70 -0.6904 MIMAT0000388 dme-miR-303 3355079 CG40045 uggucaaaggacacuUUGGAUUu |||:||| uacauuaaaaggauuAACUUAAa 2 9 43 65 [dm3:3L:24028932-24028954:+] 0.7085 124 0 -8.41 -0.4265 MIMAT0005502 dme-miR-985 3355079 CG40045 acgggcugGUAACCUUGUAAAc :||| ||||||| uauauuuaUAUU-AAACAUUUu 2 15 21 41 [dm3:3L:24028910-24028930:+] 0.7085 144 7 -5.02 -1.3402 MIMAT0011784 dme-miR-2279* 3355079 CG40045 uuaaaGUGUGUGUCUAUAAAUu :|:|: :: ||||||| cgcccUAUAUUUGUAUAUUUAu 2 18 8 29 [dm3:3L:24028897-24028918:+] 0.7085 149 7 -5.36 -1.3147 MIMAT0011784 dme-miR-2279* 3355079 CG40045 uuaaAGUGUGUGUCUAUAAAUu |:| || :| |||| || aggaUUA-ACUUAAAUAUGUA- 2 19 52 71 [dm3:3L:24028941-24028960:+] 0.7085 120 0 -0.54 -0.1550 MIMAT0011791 dme-miR-2283 3355079 CG40045 uaacagcAUAAGUACUAUAAAag ||||::| |||||| cgcccuaUAUUUGU-AUAUUUau 3 17 8 29 [dm3:3L:24028897-24028918:+] 0.7085 138 0 -5.71 -0.3866 MIMAT0011791 dme-miR-2283 3355079 CG40045 uaacagcauaaguacUAUAAAag |||||| --agcggcccgcccuAUAUUUgu 3 9 1 21 [dm3:3L:24028890-24028910:+] 0.7085 120 0 -3.41 -0.4726 MIMAT0011791 dme-miR-2283 3355079 CG40045 uaacAGCAUAAGUACUAUAAAAg |: |||| | | ||||| auauUUAUAUUAA--ACAUUUUa 2 20 22 42 [dm3:3L:24028911-24028931:+] 0.7085 120 0 -1.78 -0.1833 MIMAT0012196 dme-miR-2489 3355079 CG40045 ugacGUUUAUGUUGUAUGUUAu :||| |: :||||| | auauUAAACAUUUUAUACAUUa 2 19 28 49 [dm3:3L:24028917-24028938:+] 0.7085 122 0 -6.47 -0.3331 MIMAT0012216 dme-miR-2501 3355079 CG40045 aaucggguccgugagguUUGAAUg |||||| uauacauuaaaaggauuAACUUAa 2 8 41 64 [dm3:3L:24028930-24028953:+] 0.7085 120 6 -7.30 -0.9256 MIMAT0000319 dme-miR-263a 3355079 CG40045 cacuuaagaaggucacgGUAAUUg |||||| auauuaaacauuuuauaCAUUAAa 2 8 28 51 [dm3:3L:24028917-24028940:+] 0.7085 120 6 -5.16 -0.6443 MIMAT0000347 dme-miR-283 3355079 CG40045 ucuuaauggucgacUAUAAAu |||||| -agcggcccgcccuAUAUUUg 2 8 1 20 [dm3:3L:24028890-24028909:+] 0.7085 120 6 -7.80 -0.5532 MIMAT0000347 dme-miR-283 3355079 CG40045 ucuuaauggucgacUAUAAAu |||||| cgcccuauauuuguAUAUUUa 2 8 8 28 [dm3:3L:24028897-24028917:+] 0.7085 120 6 -6.17 -0.6941 MIMAT0005463 dme-miR-iab-4as-5p 3355079 CG40045 gccauAUGGAAGUCAUAUGCAUu || ||| | |||:||| aggauUAACUUAA--AUAUGUA- 2 19 52 71 [dm3:3L:24028941-24028960:+] 0.7085 135 0 -8.59 -0.2355 MIMAT0005476 dme-miR-962 3355079 CG40045 cugucGUAGUU--AAAGAGAUGGAAUa :||:|| ||:| ||| ||| auuuaUAUUAAACAUUUUAUACAUUAa 2 21 24 50 [dm3:3L:24028913-24028939:+] 0.7085 127 0 -4.99 -0.2329 MIMAT0005476 dme-miR-962 3355079 CG40045 cugucGUAGUUAAAGAGAUGGAAUa |||:|| :|| |||| uuauaCAUUAAAAGGAUUAACUUAa 2 21 40 64 [dm3:3L:24028929-24028953:+] 0.7085 120 0 -6.67 -0.4749

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG40045 RAID00319109 dme-miR-283-5p miRNA MIMAT0000347 CG40045 mRNA 3355079 Prediction 0.1828 CG40045 RAID01007831 dme-miR-iab-8-5p miRNA MIMAT0005463 CG40045 mRNA 3355079 Prediction 0.1828 CG40045 RAID01317531 dme-miR-985-3p miRNA MIMAT0005502 CG40045 mRNA 3355079 Prediction 0.1828 CG40045 RAID02120032 dme-miR-314-3p miRNA MIMAT0000406 CG40045 mRNA 3355079 Prediction 0.1828 CG40045 RAID02309783 dme-miR-962-5p miRNA MIMAT0005476 CG40045 mRNA 3355079 Prediction 0.1828 CG40045 RAID03790172 dme-miR-263a-5p miRNA MIMAT0000319 CG40045 mRNA 3355079 Prediction 0.1828