DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 32630 Nup153 auAGUAAAGUAUACGU-UGCAUU-UAUGu |:||||: || | |: ||| |||| cgUUAUUUUUGUUGAAUAUAUAAUAUACc 2 26 722 750 [dm3:X:16503853-16503881:+] 0.5308 128 0 -8.43 -1.2029 MIMAT0000343 dme-miR-280 32630 Nup153 auAGUAAAGUAUACGUUGCAU--UUAUGu ||| | |:| :||:||| ||||| aaUCAACUACUGUAUAAUGUAGUAAUACg 2 26 847 875 [dm3:X:16503978-16504006:+] 0.4142 121 0 -14.58 -0.5809 MIMAT0000364 dme-miR-289 32630 Nup153 ucagcguccgagGUGAAUUUAUAAAu ||:|| ||||||| auucauaaagaaCAUUU-AAUAUUUu 2 15 1219 1243 [dm3:X:16504350-16504374:+] 0.5210 152 7 -7.78 -1.1990 MIMAT0005489 dme-miR-973 32630 Nup153 uuuUAGCUUCAAGUUGG-UGGUUGGu | || | |||| ||||||| agcAACGUAAAGAAACCAACCAACCc 2 23 1089 1114 [dm3:X:16504220-16504245:+] 0.4142 153 7 -19.89 -0.5221 MIMAT0005502 dme-miR-985 32630 Nup153 acgggcuGGUA-ACCUUGUAAAc :||| |||||||| cauaaauUCAUAAAGAACAUUUa 2 16 1214 1236 [dm3:X:16504345-16504367:+] 0.5210 146 7 -8.75 -1.1583 MIMAT0011784 dme-miR-2279* 32630 Nup153 uuaaagUGUGUGUCUAUAAAuu |||: :| |||||| uaaagaACAUUUA-AUAUUUua 3 17 1224 1244 [dm3:X:16504355-16504375:+] 0.5210 130 0 -4.61 -0.2847 MIMAT0011786 dme-miR-2280 32630 Nup153 uauaaaAUAACGGUUCGAUUCu | || |||||||| acuuacUCUUAAAAAGCUAAGg 2 17 534 555 [dm3:X:16503665-16503686:+] 0.5205 148 7 -11.43 -0.4980 MIMAT0011787 dme-miR-2280* 32630 Nup153 agucaaucgaaccUUCAUUUAa |||||||| ucauaauguaaauAAGUAAAUa 2 10 1322 1343 [dm3:X:16504453-16504474:+] 0.5210 145 7 -5.03 -1.1994 MIMAT0011787 dme-miR-2280* 32630 Nup153 agucaaucgaaccuuCAUUUAa |||||| aaacgguaucauaauGUAAAUa 2 8 1314 1335 [dm3:X:16504445-16504466:+] 0.5210 120 6 -6.16 -0.1231 MIMAT0011788 dme-miR-2281* 32630 Nup153 aacguaGACGUCGACGUCUAUUa :|||||: ||||||| ugaugaUUGCAGU--CAGAUAAg 2 18 910 930 [dm3:X:16504041-16504061:+] 0.4142 154 7 -16.49 -0.1402 MIMAT0011791 dme-miR-2283 32630 Nup153 uaacagcaUAAGUACUAUAAAAg |||:| ||||||| uaaagaacAUUUA--AUAUUUUa 2 16 1224 1244 [dm3:X:16504355-16504375:+] 0.5210 148 7 -4.29 -1.2850 MIMAT0011791 dme-miR-2283 32630 Nup153 uaacagcaUAAGUACUAUAAAAg || || ||||||| aaacgaaaAUGAAU-AUAUUUUa 2 16 699 720 [dm3:X:16503830-16503851:+] 0.4514 145 7 -6.00 -1.1132 MIMAT0011791 dme-miR-2283 32630 Nup153 uaacagCAUAAGU-ACUA-UAAAAg || | :| |||| ||||| uuuuaaGUUUAUAUUGAUCAUUUUu 2 18 1245 1269 [dm3:X:16504376-16504400:+] 0.5210 120 0 -6.04 -0.9081 MIMAT0012206 dme-miR-2496* 32630 Nup153 auGCUACCGGAGAGUGUG-UGCGUg ||| |:| ||||:|| ||||| cgCGAAUGUCGCUCAUACUACGCAu 2 23 608 632 [dm3:X:16503739-16503763:+] 0.5188 142 0 -28.10 -0.8661 MIMAT0000114 dme-miR-9a 32630 Nup153 agUAUGUCGAUCU-AUUGGUUUCu ||| | |: | | ||||||| ggAUAAACAUGCAGUCACCAAAGu 2 22 226 249 [dm3:X:16503357-16503380:+] 0.4666 152 7 -18.54 -0.1186 MIMAT0000114 dme-miR-9a 32630 Nup153 aguauGUCGAUCUAUUGGUU-UCu ||| :|| |||||| || gcgacCAGGAGGACAACCAACAGg 2 19 397 420 [dm3:X:16503528-16503551:+] 0.4825 126 0 -15.58 -0.1824 MIMAT0000347 dme-miR-283 32630 Nup153 ucUUAAUGGUCGACUAUAAAu || | || :| |||||| auAAAGAACAUUUAAUAUUUu 2 20 1223 1243 [dm3:X:16504354-16504374:+] 0.5210 127 6 -4.05 -0.1961 MIMAT0000390 dme-miR-304 32630 Nup153 gaGUGU-AAAUGUUUAACU-CUAAu ||:| | :|| ||||| |||| cuCAUACUACGCAUAUUGAUGAUUa 2 22 619 643 [dm3:X:16503750-16503774:+] 0.5188 128 0 -16.88 -1.0520 MIMAT0000392 dme-miR-9c 32630 Nup153 agAUGUCGAUCUUA-UGGUUUCu || | |: |:| ||||||| gaUAAACAUGCAGUCACCAAAGu 2 21 227 249 [dm3:X:16503358-16503380:+] 0.4666 151 7 -14.96 -0.1186 MIMAT0000395 dme-miR-9b 32630 Nup153 guAUGUCGAUUUUAGUGGUUUCu || | |: |:||||||||| gaUAAACAUGCAGUCACCAAAGu 2 22 227 249 [dm3:X:16503358-16503380:+] 0.4666 165 7 -22.42 -0.1198 MIMAT0000412 dme-miR-iab-4-5p 32630 Nup153 aguCCUAUGUAAGUCA-UAUGCa | ||| || :||| ||||| acuGUAUA-AUGUAGUAAUACGu 2 20 855 876 [dm3:X:16503986-16504007:+] 0.4142 125 0 -12.49 -0.3110 MIMAT0000413 dme-miR-iab-4-3p 32630 Nup153 caaugcauaugacuuccAUAUGGc |||||| uuuuguugaauauauaaUAUACCu 2 8 728 751 [dm3:X:16503859-16503882:+] 0.5308 120 6 -8.13 -0.1752 MIMAT0005463 dme-miR-iab-4as-5p 32630 Nup153 gcCAUAUGGAAGUCA-UAUGCAUu ||||| | :||| ||||||| cuGUAUA-AUGUAGUAAUACGUAu 2 22 856 878 [dm3:X:16503987-16504009:+] 0.4142 162 7 -16.32 -0.3806 MIMAT0005466 dme-miR-955 32630 Nup153 cuGUGAGUUUGGAGA-CG-UGCUAc || | ||||| | || ||||| ggCAAUGAAACCAAUGGCGACGAUg 2 22 351 375 [dm3:X:16503482-16503506:+] 0.4666 128 0 -20.84 -0.1330 MIMAT0005469 dme-miR-956 32630 Nup153 uuaccuaaUCUCACCAGAGCUUu || || ||||||| ggcaaaggAGCGUCAUCUCGAAa 2 16 493 515 [dm3:X:16503624-16503646:+] 0.5146 151 7 -15.23 -0.1564 MIMAT0005476 dme-miR-962 32630 Nup153 cugucgUAGUUAAAGAGAUGGAAUa | :| | | ||||||| uuguugAAUAUAUAAUAUACCUUAa 2 20 730 754 [dm3:X:16503861-16503885:+] 0.5308 143 7 -7.10 -1.2271 MIMAT0005477 dme-miR-963 32630 Nup153 cuuugUUGGACUA-UAAAUGGAAca ||: | || || |||||| uguugAAUAU-AUAAUAUACCUUaa 3 20 731 754 [dm3:X:16503862-16503885:+] 0.5308 132 0 -6.10 -0.1092 MIMAT0005483 dme-miR-1002 32630 Nup153 agcgggaaacaUAGGUGAUGA-AUu ||| |||||| || uagcgcaaaaaAUCAACUACUGUAu 2 14 837 861 [dm3:X:16503968-16503992:+] 0.4142 121 0 -12.82 -0.5406 MIMAT0005487 dme-miR-971 32630 Nup153 agugacauucuucaUUGUGGUu ||||||| gacgaugucccuaaAACACCAa 2 9 369 390 [dm3:X:16503500-16503521:+] 0.4666 140 7 -13.52 -0.3404 MIMAT0005503 dme-miR-986 32630 Nup153 agUCAGUGUUGCG-AUAAGCUCu ||| |: |||: |||||||| guAGUAAU-ACGUAUAUUCGAGu 2 21 865 886 [dm3:X:16503996-16504017:+] 0.4142 161 7 -20.68 -0.7295

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nup153 RAID00005677 dme-miR-9b-5p miRNA MIMAT0000395 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID00531433 dme-miR-962-5p miRNA MIMAT0005476 Nup153 mRNA 32630 Prediction 0.2202 Nup153 RAID00798183 dme-miR-963-5p miRNA MIMAT0005477 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID00860533 dme-miR-9a-5p miRNA MIMAT0000114 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID01564179 dme-miR-277-3p miRNA MIMAT0000338 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID01576763 dme-miR-955-5p miRNA MIMAT0005466 Nup153 mRNA 32630 Prediction 0.2202 Nup153 RAID01742924 dme-miR-304-5p miRNA MIMAT0000390 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID02042810 dme-miR-315-5p miRNA MIMAT0000407 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID02175453 dme-miR-971-3p miRNA MIMAT0005487 Nup153 mRNA 32630 Prediction 0.2202 Nup153 RAID02191301 dme-miR-973-5p miRNA MIMAT0005489 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID02280329 dme-miR-986-5p miRNA MIMAT0005503 Nup153 mRNA 32630 Prediction 0.2202 Nup153 RAID02335173 dme-miR-iab-4-3p miRNA MIMAT0000413 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID02518899 dme-miR-9c-5p miRNA MIMAT0000392 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID02555717 dme-miR-985-3p miRNA MIMAT0005502 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID03053048 dme-miR-375-3p miRNA MIMAT0005472 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID03305680 dme-miR-956-3p miRNA MIMAT0005469 Nup153 mRNA 32630 Prediction 0.2202 Nup153 RAID03335057 dme-miR-iab-8-5p miRNA MIMAT0005463 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID03357688 dme-miR-iab-4-5p miRNA MIMAT0000412 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID03700573 dme-miR-1002-5p miRNA MIMAT0005483 Nup153 mRNA 32630 Prediction 0.1828 Nup153 RAID03777931 dme-miR-283-5p miRNA MIMAT0000347 Nup153 mRNA 32630 Prediction 0.1828