DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 39864 Lasp ucagcguccgagGUGAAUUUAUAAAu :|: ||||||||| ucauguuuuuaaUAUAUAAAUAUUUu 2 15 1141 1166 [dm3:3L:16670113-16670138:-] 0.4903 154 7 -8.33 -1.0224 MIMAT0005489 dme-miR-973 39864 Lasp uuuuagcuucaaguugguGGUUGGu |||||| uuuaaauuuauuaguaauCCAACC- 2 8 531 554 [dm3:3L:16670725-16670748:-] 0.5130 120 6 -10.53 -0.3854 MIMAT0005509 dme-miR-991 39864 Lasp ugaaaGGUUUGAUGUUGAA-AUu ::| |||::||||| || uauacUUAUACUGUAACUUAUAc 2 18 1361 1383 [dm3:3L:16669896-16669918:-] 0.4903 125 0 -10.55 -0.9355 MIMAT0005509 dme-miR-991 39864 Lasp ugaaagguUUGAU--GUUGAAAUu ||:|| :||:|||| gggaaauuAAUUAAUUAAUUUUAa 2 15 512 535 [dm3:3L:16670744-16670767:-] 0.5130 133 0 -6.35 -0.1129 MIMAT0005510 dme-miR-992 39864 Lasp gaAUCAUGGUCUUUGCAC-AUGa | || ::: :|||||| ||| cuUCGUUUUGUGAACGUGUUACa 2 21 1707 1729 [dm3:3L:16669550-16669572:-] 0.5265 124 0 -12.92 -0.8002 MIMAT0011784 dme-miR-2279* 39864 Lasp uuaaaguGUGUGUCUAUAAAUu :|:||||||||||| ucaaauuUAUACAGAUAUUUAu 2 16 759 780 [dm3:3L:16670499-16670520:-] 0.5130 167 7 -15.81 -0.5107 MIMAT0011789 dme-miR-2281 39864 Lasp cguuaugacgucUAUGUCUAu |||||||| uaaaucaaauuuAUACAGAUa 2 10 755 775 [dm3:3L:16670504-16670524:-] 0.5130 145 7 -10.99 -1.2145 MIMAT0011791 dme-miR-2283 39864 Lasp uaACAGCA--UAAGUA-CUAUAAAAg |||: | || :|| ||||||| caUGUUUUUAAUAUAUAAAUAUUUUu 2 22 1142 1167 [dm3:3L:16670112-16670137:-] 0.4903 151 7 -3.61 -0.9354 MIMAT0011791 dme-miR-2283 39864 Lasp uaacagcaUAAGU-ACUAUAAAAg |||:| | |||||| agcaggacAUUUACUACUAUUUUa 2 16 311 334 [dm3:3L:16670945-16670968:-] 0.6539 122 6 -1.88 -0.2037 MIMAT0012197 dme-miR-2490 39864 Lasp aacGUUGGACGA--AAUAGC-GAAGu || |||||| | ||| |||| cuaCAUCCUGCUCGUGCUCGCCUUCu 2 21 63 88 [dm3:3L:16671191-16671216:-] 0.6539 127 0 -20.42 -0.3175 MIMAT0012197 dme-miR-2490 39864 Lasp aacGUUGGACGA--AAUAGC-GAAGu || |||||| | ||| |||| cuaCAUCCUGCUCGUGCUCGCCUUCu 2 21 63 88 [dm3:3L:16671191-16671216:-] 0.6539 127 0 -20.42 -0.5497 MIMAT0012198 dme-miR-2491 39864 Lasp ucGU-UGACGUUUCCGUUGUCGc || || | | ||||||| guCACACGCCCCAACCAACAGCc 2 21 373 395 [dm3:3L:16670884-16670906:-] 0.4842 143 7 -11.13 -0.1027 MIMAT0012198 dme-miR-2491 39864 Lasp ucGU-UGACGUUUCCGUUGUCGc || || | | ||||||| guCACACGCCCCAACCAACAGCc 2 21 373 395 [dm3:3L:16670884-16670906:-] 0.4842 143 7 -11.13 -0.2122 MIMAT0012204 dme-miR-2495 39864 Lasp ucagucggguuAAC-UUCACGGu ||| ||||||| aaaagaaauccUUGAAAGUGCCu 2 12 1253 1275 [dm3:3L:16670004-16670026:-] 0.4903 146 7 -14.97 -0.7847 MIMAT0012208 dme-miR-2497* 39864 Lasp uuGUUGAUGUAAAACGU--UA-CGAAUg |||||| || | || || ||||| acCAACUA-AUCGUACACUAUAGCUUAc 2 24 802 828 [dm3:3L:16670451-16670477:-] 0.4519 128 0 -13.23 -0.4482 MIMAT0012213 dme-miR-2499 39864 Lasp augccugcacUUACAGUAGGCGUa | | |||||||| cacuacagcaACUACCAUCCGCAa 2 15 232 255 [dm3:3L:16671024-16671047:-] 0.6539 146 7 -13.69 -0.4640 MIMAT0012213 dme-miR-2499 39864 Lasp augccugcacUUACAGUAGGCGUa | | |||||||| cacuacagcaACUACCAUCCGCAa 2 15 232 255 [dm3:3L:16671024-16671047:-] 0.6539 146 7 -13.69 -0.7290 MIMAT0012531 dme-miR-10-3p 39864 Lasp uuuggagagaUCUUGGCUUAAAc |||| ||||||| cgagcaauggAGAA-CGAAUUUc 2 14 1400 1421 [dm3:3L:16669858-16669879:-] 0.4903 151 7 -11.69 -0.4320 MIMAT0000319 dme-miR-263a 39864 Lasp cacuuaagaaggucacgGUAAUUg |||||| gcuuaucaauaauaaugCAUUAAa 2 8 1320 1343 [dm3:3L:16669936-16669959:-] 0.4903 120 6 -5.00 -0.1559 MIMAT0000319 dme-miR-263a 39864 Lasp cacUUAAGAAGGUCACGGUAAUUg ||||:|| ||| |||||| uuaAAUUUUU--AGU-GCAUUAAc 2 22 402 422 [dm3:3L:16670857-16670877:-] 0.4986 132 6 -17.55 -0.1169 MIMAT0000332 dme-miR-274 39864 Lasp uaaugggcaAUCACAGC-CAGUGUUUu | || ||| ||||||| guggagauaUCGUUUCGUUUCACAAAa 2 18 1230 1256 [dm3:3L:16670023-16670049:-] 0.4903 152 7 -16.25 -0.7705 MIMAT0000338 dme-miR-277 39864 Lasp acagcaUGGUCUAUCACGUAAAu :||| :| ||||||| aacccaGCCAAGU-UUGCAUUUa 2 18 719 740 [dm3:3L:16670539-16670560:-] 0.5130 147 7 -13.43 -0.7930 MIMAT0000338 dme-miR-277 39864 Lasp acaGCAUGGU--CUAUCACGUAAau | ||:|| ||| |||||| aggCUUAUCAAUAAUAAUGCAUUaa 3 21 1318 1342 [dm3:3L:16669937-16669961:-] 0.4903 139 0 -9.25 -0.1254 MIMAT0000347 dme-miR-283 39864 Lasp ucUUAAUGGUCGACUAUAAAu |||| :| | ||||||| caAAUUUAUA-CAGAUAUUUa 2 20 760 779 [dm3:3L:16670500-16670519:-] 0.5130 153 7 -6.68 -1.0753 MIMAT0000351 dme-miR-124 39864 Lasp gaacCGUAAGUGGC--GCACGGAAu | | || ::| ||||||| aaaaGAAAUCCUUGAAAGUGCCUUu 2 20 1253 1277 [dm3:3L:16670002-16670026:-] 0.4903 142 7 -15.85 -0.9215 MIMAT0000365 dme-bantam 39864 Lasp uuaGUCG-AAAGUUUUACUA-GAGu |||| ||:: ::|||| ||| cgcCAGCAGUUUGUGGUGAUCCUCg 2 21 28 52 [dm3:3L:16671227-16671251:-] 0.7172 123 0 -17.82 -0.2613 MIMAT0000365 dme-bantam 39864 Lasp uuaGUCG-AAAGUUUUACUA-GAGu |||| ||:: ::|||| ||| cgcCAGCAGUUUGUGGUGAUCCUCg 2 21 28 52 [dm3:3L:16671227-16671251:-] 0.7172 123 0 -17.82 -0.4709 MIMAT0000396 dme-let-7 39864 Lasp ugauAUGUUGGAUGAUGG-AGu ||||: | |||||| || ccacUACAG-CAACUACCAUCc 2 18 231 251 [dm3:3L:16671028-16671048:-] 0.6539 123 0 -15.40 -0.2473 MIMAT0000396 dme-let-7 39864 Lasp ugauAUGUUGGAUGAUGG-AGu ||||: | |||||| || ccacUACAG-CAACUACCAUCc 2 18 231 251 [dm3:3L:16671028-16671048:-] 0.6539 123 0 -15.40 -0.4501 MIMAT0000407 dme-miR-315 39864 Lasp cgAAAGACU----CGUUG-UUAGUUUu ||| ||| |: || ||||||| guUUUGUGAACGUGUUACAAAUCAAAu 2 21 1711 1737 [dm3:3L:16669542-16669568:-] 0.5265 150 7 -12.05 -0.8740 MIMAT0000407 dme-miR-315 39864 Lasp cgaaagacucGUUG-UUAGUUUu :||: ||||||| cuacagcccuUAAUAAAUCAAAu 2 13 742 764 [dm3:3L:16670515-16670537:-] 0.5130 143 7 -6.25 -1.0014 MIMAT0000407 dme-miR-315 39864 Lasp cgaaagacucgUUGUUAGUUuu || |||||| auaaugcauuaAAGAAUCAAua 3 12 1331 1352 [dm3:3L:16669927-16669948:-] 0.4903 127 0 -4.70 -0.1356 MIMAT0000408 dme-miR-316 39864 Lasp gcgGUCAUUCGCC--UUUUUCUGu ||| |: :|| |||||||| cagCAGGAGUUGGCCAAAAAGACg 2 20 271 294 [dm3:3L:16670985-16671008:-] 0.6539 158 7 -18.40 -0.2009 MIMAT0000408 dme-miR-316 39864 Lasp gcggucauucGCCUUUUUCUgu :| ||||||| cagcggauuaUGUAAAAAGAga 3 13 487 508 [dm3:3L:16670771-16670792:-] 0.5130 128 0 -12.87 -0.1197 MIMAT0005466 dme-miR-955 39864 Lasp cugugaGUUUGGAGACGU-GCUAc || |: |||||| |||| gcggaaCAUAUAUCUGCACCGAUu 2 18 669 692 [dm3:3L:16670587-16670610:-] 0.5130 129 0 -15.21 -0.2577 MIMAT0005470 dme-miR-957 39864 Lasp cggagUCAAAACCUGCC-AAAGu |||||| ||| |||| ccccgAGUUUUCUUCGGCUUUCu 2 18 990 1012 [dm3:3L:16670267-16670289:-] 0.4920 125 0 -15.64 -0.2743 MIMAT0005492 dme-miR-976 39864 Lasp cguaacuACUAUUGAUUAGGUu | || | ||||||| uuuaaauUUAUUAGUAAUCCAa 2 16 531 552 [dm3:3L:16670727-16670748:-] 0.5130 151 7 -8.89 -0.9125 MIMAT0005492 dme-miR-976 39864 Lasp cguaacuACUAUUGAUUAGGUu | || | ||||||| uuuaaauUUAUUAGUAAUCCAa 2 16 531 552 [dm3:3L:16670727-16670748:-] 0.5130 151 7 -8.89 -1.0384 MIMAT0005501 dme-miR-927 39864 Lasp ccaUUUCGCAUCCUU-AAGAUUu | :| | | ||| |||||| gcaAUGGAGAACGAAUUUCUAAc 2 20 1403 1425 [dm3:3L:16669854-16669876:-] 0.4903 123 6 -7.46 -0.3477 MIMAT0005507 dme-miR-137 39864 Lasp gaUGCACAUAAGAGUUCGUUAu ||| || | ||||||| uaACGCAAAUAAUGAAGCAAUu 2 21 1422 1443 [dm3:3L:16669836-16669857:-] 0.4903 152 7 -11.01 -0.5430 MIMAT0005511 dme-miR-929 39864 Lasp guuagacugaggcaAUCCCUc |||||| --------------UAGGGAa 2 8 1 7 [dm3:3L:16671272-16671278:-] 0.7805 120 6 -7.02 -0.1606 MIMAT0005019 dme-miR-1006 39864 Lasp gauacUUAUUCUUUAGCUUAAAu ||| :||:| ||||||| cgagcAAU-GGAGAACGAAUUUc 2 19 1400 1421 [dm3:3L:16669858-16669879:-] 0.4903 160 7 -11.11 -0.4573

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Lasp RAID00115633 dme-miR-1006-3p miRNA MIMAT0005019 Lasp mRNA 39864 Prediction 0.2202 Lasp RAID00165253 dme-miR-957-3p miRNA MIMAT0005470 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID00307229 dme-miR-316-5p miRNA MIMAT0000408 Lasp mRNA 39864 Prediction 0.2202 Lasp RAID00405564 dme-miR-277-3p miRNA MIMAT0000338 Lasp mRNA 39864 Prediction 0.2455 Lasp RAID01050128 dme-miR-955-5p miRNA MIMAT0005466 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID01141744 dme-miR-315-5p miRNA MIMAT0000407 Lasp mRNA 39864 Prediction 0.2202 Lasp RAID01369814 dme-miR-124-3p miRNA MIMAT0000351 Lasp mRNA 39864 Prediction 0.2455 Lasp RAID01446890 dme-miR-985-3p miRNA MIMAT0005502 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID01615155 dme-miR-263a-5p miRNA MIMAT0000319 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID01621121 dme-bantam-3p miRNA MIMAT0000365 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID01772272 dme-miR-976-3p miRNA MIMAT0005492 Lasp mRNA 39864 Prediction 0.2202 Lasp RAID01921256 dme-miR-2495-5p miRNA MIMAT0012204 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID02191159 dme-miR-137-3p miRNA MIMAT0005507 Lasp mRNA 39864 Prediction 0.2202 Lasp RAID02376595 dme-miR-973-5p miRNA MIMAT0005489 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID02539873 dme-miR-1011-3p miRNA MIMAT0005024 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID02659088 dme-miR-10-3p miRNA MIMAT0012531 Lasp mRNA 39864 Prediction 0.2202 Lasp RAID02681356 dme-miR-283-5p miRNA MIMAT0000347 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID02775853 dme-miR-929-3p miRNA MIMAT0005511 Lasp mRNA 39864 Prediction 0.2381 Lasp RAID02989746 dme-miR-274-5p miRNA MIMAT0000332 Lasp mRNA 39864 Prediction 0.2381 Lasp RAID03007485 dme-miR-927-5p miRNA MIMAT0005501 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID03112646 dme-miR-33-5p miRNA MIMAT0000342 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID03204606 dme-let-7-5p miRNA MIMAT0000396 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID03441500 dme-miR-308-3p miRNA MIMAT0000399 Lasp mRNA 39864 Prediction 0.1828 Lasp RAID03672150 dme-miR-971-3p miRNA MIMAT0005487 Lasp mRNA 39864 Prediction 0.1828