DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 3772658 CG33722 ucagcgucCGAGGUGA--AUUUAUAAAu |||::|:| || |||||| augaauccGCUUUAUUUCUAUAUAUUUu 2 19 33 60 [dm3:3R:4071404-4071431:+] 0.6105 133 6 -11.04 -0.1478 MIMAT0005464 dme-miR-iab-4as-3p 3772658 CG33722 auuuGCAUAUGACUUAC-AUAGg | ||| | |||| |||| auuuCUUAUUGUCAAUGUUAUCa 2 19 264 286 [dm3:3R:4071635-4071657:+] 0.5502 122 0 -7.58 -0.9929 MIMAT0005489 dme-miR-973 3772658 CG33722 uuuuagcUUCAAGUUGGUGGUUGGu ||| | :|:||||||| gaugagaAAGAU--GCUACCAACCu 2 19 717 739 [dm3:3R:4072199-4072221:+] 0.4813 151 7 -18.70 -0.1447 MIMAT0005502 dme-miR-985 3772658 CG33722 acgGGC-UGGUAACCUUGUAAAc |:| | | || ||||||| uuaCUGAAGCCUUUCAACAUUUc 2 20 1022 1044 [dm3:3R:4072566-4072588:+] 0.4849 150 7 -10.00 -0.1121 MIMAT0005502 dme-miR-985 3772658 CG33722 acgggcuGGUAACCU-UGUAAAc ::||| || |||||| uauuuuuUUAUUUGACACAUUUu 2 16 55 77 [dm3:3R:4071426-4071448:+] 0.6105 123 6 -7.35 -1.1810 MIMAT0005021 dme-miR-1008 3772658 CG33722 acAUUUGUGUUUUUC-GACACu || |:||| | || ||||| gaUACAUACAUACAGUCUGUGu 2 20 3 24 [dm3:3R:4071374-4071395:+] 0.6948 131 0 -12.10 -0.6224 MIMAT0005021 dme-miR-1008 3772658 CG33722 acAUUUGUGUUUUUC-GACACu || |:||| | || ||||| gaUACAUACAUACAGUCUGUGu 2 20 3 24 [dm3:3R:4071374-4071395:+] 0.6948 131 0 -12.10 -0.8753 MIMAT0005025 dme-miR-1012 3772658 CG33722 gauacccCUUUUAGAAA-CUGAUu ||| | |||| ||||| auccguuGAACAGCUUUCGACUAa 2 17 602 625 [dm3:3R:4072030-4072053:+] 0.5557 128 0 -10.84 -0.6106 MIMAT0005026 dme-miR-1013 3772658 CG33722 gcucaAGCCGUAUGAAAAUa |:| ::|||||||| augacUUGAUGUACUUUUAc 2 16 773 792 [dm3:3R:4072255-4072274:+] 0.4813 155 7 -11.86 -0.1797 MIMAT0011784 dme-miR-2279* 3772658 CG33722 uuaAAGUGUGUGUCUAUAAAuu ||:|: : :| |||||| cgcUUUAUUUCUAUAUAUUUuu 3 20 40 61 [dm3:3R:4071411-4071432:+] 0.6105 135 0 -5.32 -0.1737 MIMAT0011791 dme-miR-2283 3772658 CG33722 uaacagcAUAAGUA-CUAUAAAAg ||||: | ||||||| uccgcuuUAUUUCUAUAUAUUUUu 2 17 38 61 [dm3:3R:4071409-4071432:+] 0.6105 151 7 -4.98 -1.2185 MIMAT0012195 dme-miR-307-as 3772658 CG33722 cugAGUGAGUUGGA--CCCACACu |:|: || ::| ||||||| aagUUAUACACUUUGAGGGUGUGu 2 20 1079 1102 [dm3:3R:4072623-4072646:+] 0.4562 150 7 -19.31 -0.1365 MIMAT0012196 dme-miR-2489 3772658 CG33722 ugacGUUUAUGUUGUA-UGUUAu | | ||: :||| ||||| aaauCCACUAUCGCAUAACAAUc 2 19 193 215 [dm3:3R:4071564-4071586:+] 0.5211 122 0 -4.91 -0.3827 MIMAT0012200 dme-miR-2493* 3772658 CG33722 accgacacaCACACACACUcg || ||||||| auacauacaGUCUGUGUGAua 3 13 8 28 [dm3:3R:4071379-4071399:+] 0.6948 132 0 -10.55 -0.1238 MIMAT0012200 dme-miR-2493* 3772658 CG33722 accgacacaCACACACACUcg || ||||||| auacauacaGUCUGUGUGAua 3 13 8 28 [dm3:3R:4071379-4071399:+] 0.6948 132 0 -10.55 -0.2110 MIMAT0012201 dme-miR-2493 3772658 CG33722 ugcggagcGU-GUUUAUGUGUGCc || |: |||||||| gacuaauaCAUCGCCUACACACGa 2 16 620 643 [dm3:3R:4072048-4072071:+] 0.5557 146 7 -18.15 -0.6150 MIMAT0012208 dme-miR-2497* 3772658 CG33722 uuguUGAUGU-AAAA-CGUUACGAAUg :| ||| |||| |:||||||| uggcGCCACAGUUUUCCCGAUGCUUAa 2 22 1572 1598 [dm3:3R:4073228-4073254:+] 0.5687 163 7 -15.11 -0.2319 MIMAT0012210 dme-miR-2498* 3772658 CG33722 guUUUUAUUCGU--AUUG---UCGGAAAu |:|||||||| | || ||||||| gaAGAAUAAGCAACUUACUGAAGCCUUUc 2 23 1008 1036 [dm3:3R:4072552-4072580:+] 0.4849 168 7 -18.95 -0.2890 MIMAT0012213 dme-miR-2499 3772658 CG33722 augccugcACUUACAGUAGGCGua | |||| |||||| ugugauauUAAAUG-AAUCCGCuu 3 17 22 44 [dm3:3R:4071393-4071415:+] 0.6948 130 0 -14.48 -0.1930 MIMAT0012213 dme-miR-2499 3772658 CG33722 augccugcACUUACAGUAGGCGua | |||| |||||| ugugauauUAAAUG-AAUCCGCuu 3 17 22 44 [dm3:3R:4071393-4071415:+] 0.6948 130 0 -14.48 -0.5319 MIMAT0012215 dme-miR-2500 3772658 CG33722 gaCUCCAGGUGUGUGUUUUAGg ||| |: :|:: ||||||| gcGAGUUUGGCGUCCAAAAUCa 2 21 884 905 [dm3:3R:4072428-4072449:+] 0.5730 160 7 -15.20 -0.3213 MIMAT0000106 dme-miR-2a 3772658 CG33722 cgaguaguuucgaccgACACUAu |||||| acauacauacagucugUGUGAUa 2 8 6 28 [dm3:3R:4071377-4071399:+] 0.6948 120 6 -15.25 -0.1303 MIMAT0000106 dme-miR-2a 3772658 CG33722 cgaguaguuucgaccgACACUAu |||||| acauacauacagucugUGUGAUa 2 8 6 28 [dm3:3R:4071377-4071399:+] 0.6948 120 6 -15.25 -0.2278 MIMAT0000107 dme-miR-2b 3772658 CG33722 cgaggaguuucgaccgACACUAu |||||| acauacauacagucugUGUGAUa 2 8 6 28 [dm3:3R:4071377-4071399:+] 0.6948 120 6 -12.84 -0.1303 MIMAT0000107 dme-miR-2b 3772658 CG33722 cgaggaguuucgaccgACACUAu |||||| acauacauacagucugUGUGAUa 2 8 6 28 [dm3:3R:4071377-4071399:+] 0.6948 120 6 -12.84 -0.2278 MIMAT0000109 dme-miR-4 3772658 CG33722 aguuaccaacagauCGAAAUa |||||| uauuaaaugaauccGCUUUAu 2 8 27 47 [dm3:3R:4071398-4071418:+] 0.6948 120 6 -7.11 -0.1263 MIMAT0000111 dme-miR-6 3772658 CG33722 uuuuucuUGUCGGUGACACUAu ||||:| |||||| cauacauACAGUCUGUGUGAUa 2 16 7 28 [dm3:3R:4071378-4071399:+] 0.6948 131 6 -17.51 -0.1290 MIMAT0000111 dme-miR-6 3772658 CG33722 uuuuucuUGUCGGUGACACUAu ||||:| |||||| cauacauACAGUCUGUGUGAUa 2 16 7 28 [dm3:3R:4071378-4071399:+] 0.6948 131 6 -17.51 -0.2257 MIMAT0000116 dme-miR-11 3772658 CG33722 cguucuugagucugACACUAc |||||| auacauacagucugUGUGAUa 2 8 8 28 [dm3:3R:4071379-4071399:+] 0.6948 120 6 -13.40 -0.1316 MIMAT0000116 dme-miR-11 3772658 CG33722 cguucuugagucugACACUAc |||||| auacauacagucugUGUGAUa 2 8 8 28 [dm3:3R:4071379-4071399:+] 0.6948 120 6 -13.40 -0.2298 MIMAT0000118 dme-miR-13a 3772658 CG33722 ugaGUAGUUUUACCGACACUAu ||| | |:| |||||| auaCAU-ACAGUCUGUGUGAUa 2 20 8 28 [dm3:3R:4071379-4071399:+] 0.6948 121 6 -13.38 -0.1303 MIMAT0000118 dme-miR-13a 3772658 CG33722 ugaGUAGUUUUACCGACACUAu ||| | |:| |||||| auaCAU-ACAGUCUGUGUGAUa 2 20 8 28 [dm3:3R:4071379-4071399:+] 0.6948 121 6 -13.38 -0.2278 MIMAT0000119 dme-miR-13b 3772658 CG33722 ugagcaguuuuaccgACACUAu |||||| cauacauacagucugUGUGAUa 2 8 7 28 [dm3:3R:4071378-4071399:+] 0.6948 120 6 -10.97 -0.1303 MIMAT0000119 dme-miR-13b 3772658 CG33722 ugagcaguuuuaccgACACUAu |||||| cauacauacagucugUGUGAUa 2 8 7 28 [dm3:3R:4071378-4071399:+] 0.6948 120 6 -10.97 -0.2278 MIMAT0000319 dme-miR-263a 3772658 CG33722 cacUUAAGAAGGU--CACGGUAAUUg ||| | :|| ||||||||| gaaAAUGGUAUCAAUAUGCCAUUAAg 2 22 650 675 [dm3:3R:4072078-4072103:+] 0.4791 156 7 -12.97 -0.1782 MIMAT0000345 dme-miR-281 3772658 CG33722 uguuucuCUCGUUAAGGUACUGu | | || |||||||| gcgugucGCGGAA-UCCAUGACu 2 17 757 778 [dm3:3R:4072239-4072260:+] 0.4813 150 7 -16.03 -0.2713 MIMAT0000345 dme-miR-281 3772658 CG33722 uguuucucucguuaaGGUACUGu ||||||| gcacuucauauugcaCCAUGACu 2 9 1464 1486 [dm3:3R:4073008-4073030:+] 0.4973 140 7 -12.20 -0.4523 MIMAT0000346 dme-miR-282 3772658 CG33722 ugucugUUUCGGAUCAUC--UCCG-AUCUAa ||| : || || :||| ||||| ccucuaAAAAUGGAGGAGCUGGGCUUAGAUc 2 23 1201 1231 [dm3:3R:4072745-4072775:+] 0.6292 121 0 -17.93 -0.1447 MIMAT0000347 dme-miR-283 3772658 CG33722 ucuuaauggucgacUAUAAAu |||||| cgcuuuauuucuauAUAUUUu 2 8 40 60 [dm3:3R:4071411-4071431:+] 0.6105 120 6 -2.13 -0.1449 MIMAT0000347 dme-miR-283 3772658 CG33722 ucuuaauGGUCGACUAUAAau |:: ||||||| auacaguCUGUGUGAUAUUaa 3 15 12 32 [dm3:3R:4071383-4071403:+] 0.6948 126 0 -7.38 -0.1823 MIMAT0000389 dme-miR-31b 3772658 CG33722 gucgauaaggCUG-UAGAACGGu ||: |||||||| aaaucaaaagGAUGAUCUUGCCg 2 13 900 922 [dm3:3R:4072444-4072466:+] 0.5730 147 7 -17.67 -0.1331 MIMAT0000399 dme-miR-308 3772658 CG33722 gaGUGUCAUAUUAG-GACACUAa :||| || |:|| |||||| caUACA-UACAGUCUGUGUGAUa 2 21 7 28 [dm3:3R:4071378-4071399:+] 0.6948 129 6 -14.45 -0.1316 MIMAT0000399 dme-miR-308 3772658 CG33722 gaGUGUCAUAUUAG-GACACUAa :||| || |:|| |||||| caUACA-UACAGUCUGUGUGAUa 2 21 7 28 [dm3:3R:4071378-4071399:+] 0.6948 129 6 -14.45 -0.2298 MIMAT0000400 dme-miR-31a 3772658 CG33722 agucgauacggCUG-UAGAACGGu ||: |||||||| aaaaucaaaagGAUGAUCUUGCCg 2 13 899 922 [dm3:3R:4072443-4072466:+] 0.5730 147 7 -18.84 -0.1305 MIMAT0000407 dme-miR-315 3772658 CG33722 cgaAAGACUC-GUUGUUAGUUUu ||: | | | | ||||||| gagUUUGGCGUCCAAAAUCAAAa 2 20 886 908 [dm3:3R:4072430-4072452:+] 0.5730 150 7 -12.64 -0.3289 MIMAT0000411 dme-miR-2c 3772658 CG33722 cggguaguuucgaccgACACUAu |||||| acauacauacagucugUGUGAUa 2 8 6 28 [dm3:3R:4071377-4071399:+] 0.6948 120 6 -15.20 -0.1303 MIMAT0000411 dme-miR-2c 3772658 CG33722 cggguaguuucgaccgACACUAu |||||| acauacauacagucugUGUGAUa 2 8 6 28 [dm3:3R:4071377-4071399:+] 0.6948 120 6 -15.20 -0.2278 MIMAT0000412 dme-miR-iab-4-5p 3772658 CG33722 agUCCUAUGUAAGUCA-UAUGCa :| | || |||| ||||| cuGGAAAACUGACAGUAAUACGc 2 21 120 142 [dm3:3R:4071491-4071513:+] 0.5134 120 0 -13.41 -0.2043 MIMAT0005477 dme-miR-963 3772658 CG33722 cuUUGUUGGA--CU-AUAAAU--GGAACa :|||:|:| || |:|||| ||||| cuGACAGCUUACGAUUGUUUAGCCCUUGg 2 23 856 884 [dm3:3R:4072400-4072428:+] 0.5145 120 0 -16.37 -0.1287 MIMAT0005485 dme-miR-969 3772658 CG33722 uuuugaacgaaUCACCUUGAg | ||||||| gcugccucaacAAUGGAACUg 2 11 427 447 [dm3:3R:4071798-4071818:+] 0.5386 142 7 -9.07 -0.4574 MIMAT0005486 dme-miR-970 3772658 CG33722 uaucggcgcacacAGAAUACu ||||||| gaacccaaagaaaUCUUAUGc 2 9 408 428 [dm3:3R:4071779-4071799:+] 0.4984 140 7 -8.15 -0.3682 MIMAT0005518 dme-miR-998 3772658 CG33722 cucGACUUAGAGUAC-CACGAu :||: |:|| || ||||| uuaUUGGCUUUC-UGAGUGCUu 2 19 356 376 [dm3:3R:4071727-4071747:+] 0.4984 120 0 -15.57 -0.5159 MIMAT0005519 dme-miR-999 3772658 CG33722 ucuguGUCAGAAUGUCAAU-UGu |||| |: ||||| || gucgcCAGUAAUGAAGUUAUACa 2 18 1066 1088 [dm3:3R:4072610-4072632:+] 0.4705 121 0 -12.08 -0.3176

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG33722 RAID00179627 dme-miR-219-5p miRNA MIMAT0000335 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID00351304 dme-miR-13a-3p miRNA MIMAT0000118 CG33722 mRNA 3772658 Prediction 0.2202 CG33722 RAID00441921 dme-miR-963-5p miRNA MIMAT0005477 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID00909449 dme-miR-999-3p miRNA MIMAT0005519 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID01027920 dme-miR-315-5p miRNA MIMAT0000407 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID01222669 dme-miR-31a-5p miRNA MIMAT0000400 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID01277757 dme-miR-2b-3p miRNA MIMAT0000107 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID01402461 dme-miR-31b-5p miRNA MIMAT0000389 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID01428582 dme-miR-282-5p miRNA MIMAT0000346 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID01654353 dme-miR-308-3p miRNA MIMAT0000399 CG33722 mRNA 3772658 Prediction 0.2202 CG33722 RAID02093383 dme-miR-281-3p miRNA MIMAT0000345 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID02102975 dme-miR-11-3p miRNA MIMAT0000116 CG33722 mRNA 3772658 Prediction 0.2202 CG33722 RAID02103270 dme-miR-4-3p miRNA MIMAT0000109 CG33722 mRNA 3772658 Prediction 0.2202 CG33722 RAID02253413 dme-miR-970-3p miRNA MIMAT0005486 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID02394303 dme-miR-998-3p miRNA MIMAT0005518 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID02707255 dme-miR-969-5p miRNA MIMAT0005485 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID02735506 dme-miR-2a-3p miRNA MIMAT0000106 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID02867199 dme-mir-2a-1 miRNA MI0000117 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID02947191 dme-miR-6-3p miRNA MIMAT0000111 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID02958607 dme-miR-13b-3p miRNA MIMAT0000119 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID02963046 dme-miR-iab-4-5p miRNA MIMAT0000412 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID03022113 dme-miR-2c-3p miRNA MIMAT0000411 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID03390003 dme-miR-263a-5p miRNA MIMAT0000319 CG33722 mRNA 3772658 Prediction 0.1828 CG33722 RAID03977740 dme-miR-283-5p miRNA MIMAT0000347 CG33722 mRNA 3772658 Prediction 0.2381