DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 5740640 CG34289 ucagcguccGAGGUGAAUUUAUAAAu :| : |||| |||||| ugauauuuuUUGUCCUUAUAUAUUUc 2 18 20 45 [dm3:3R:19332658-19332683:-] 0.5304 129 6 -6.52 -0.1779 MIMAT0005482 dme-miR-967 5740640 CG34289 gcgaagaggucuccAUAGAGa |||||| ucuauauauauuuaUAUCUCa 2 8 44 64 [dm3:3R:19332639-19332659:-] 0.5304 120 6 -6.25 -0.1041 MIMAT0011784 dme-miR-2279* 5740640 CG34289 uuAAAGUGUGUGUCUAUAAAUu |||| :|:| ||||||| uaUUUC---UAUAUAUAUUUAu 2 21 40 58 [dm3:3R:19332645-19332663:-] 0.5304 152 7 -8.07 -1.2495 MIMAT0011784 dme-miR-2279* 5740640 CG34289 uuAAAGUGUGUGUCUAUAAAuu |||::: | :| |||||| uuUUUUGUCCUUAUAUAUUUcu 3 21 25 46 [dm3:3R:19332657-19332678:-] 0.5304 140 0 -2.59 -0.1749 MIMAT0011791 dme-miR-2283 5740640 CG34289 uaacaGCAUAAGUACUAUAAAAg || ||| :||||||||| cguuaCGCAUU-GUGAUAUUUUu 2 19 8 29 [dm3:3R:19332674-19332695:-] 0.5304 164 7 -13.38 -0.9842 MIMAT0011791 dme-miR-2283 5740640 CG34289 uaACAGCAUAAGUACUAUAAAag | |:|| |:|| |||||| uuUUUUGUCCUUAU-AUAUUUcu 3 22 25 46 [dm3:3R:19332657-19332678:-] 0.5304 139 0 -5.91 -0.1593 MIMAT0011791 dme-miR-2283 5740640 CG34289 uaacagcAUAA--GUA-CUAUAAAag |||| :|| |||||| ccuuauaUAUUUCUAUAUAUAUUUau 3 17 33 58 [dm3:3R:19332645-19332670:-] 0.5304 126 0 -3.59 -0.1558 MIMAT0012214 dme-miR-2500* 5740640 CG34289 ccaUAACA-UAUACACACAAGGAAUg ||||| |||| | | |||||| cgcAUUGUGAUAUUUUUUGUCCUUAu 2 23 13 38 [dm3:3R:19332665-19332690:-] 0.5304 145 6 -12.93 -0.1317 MIMAT0000106 dme-miR-2a 5740640 CG34289 cgaGUAGUUUCGACCGACACUAu :|||: | :|||||| uugUAUCGUUACGCAUUGUGAUa 2 21 2 24 [dm3:3R:19332679-19332701:-] 0.5304 128 6 -14.53 -0.1613 MIMAT0000107 dme-miR-2b 5740640 CG34289 cgaggaguuucgaccGACACUAu :|||||| uuguaucguuacgcaUUGUGAUa 2 9 2 24 [dm3:3R:19332679-19332701:-] 0.5304 124 6 -12.67 -0.1613 MIMAT0000111 dme-miR-6 5740640 CG34289 uuuuucuugucgGUGACACUAu ||:|||||| uguaucguuacgCAUUGUGAUa 2 11 3 24 [dm3:3R:19332679-19332700:-] 0.5304 134 6 -14.38 -0.1628 MIMAT0000116 dme-miR-11 5740640 CG34289 cguucuugaGUCUGACACUAc |: |:|||||| guaucguuaCGCAUUGUGAUa 2 13 4 24 [dm3:3R:19332679-19332699:-] 0.5304 132 6 -10.53 -0.1613 MIMAT0000118 dme-miR-13a 5740640 CG34289 ugaGUAGUUUUAC-CGACACUAu :|||: | | :|||||| uugUAUCGUUACGCAUUGUGAUa 2 20 2 24 [dm3:3R:19332679-19332701:-] 0.5304 130 6 -13.73 -0.1628 MIMAT0000119 dme-miR-13b 5740640 CG34289 ugAGCAGUUUUACCGACACUAu ||||:| : :|||||| uaUCGUUACG--CAUUGUGAUa 2 21 5 24 [dm3:3R:19332679-19332698:-] 0.5304 129 6 -15.30 -0.1628 MIMAT0000347 dme-miR-283 5740640 CG34289 ucuUAAUG-GUCG-ACUAUAAAu :|||| || : |||||||| aucGUUACGCAUUGUGAUAUUUu 2 19 6 28 [dm3:3R:19332675-19332697:-] 0.5304 156 7 -10.54 -0.8725 MIMAT0000347 dme-miR-283 5740640 CG34289 ucuuaauggucgacUAUAAAu |||||| uuuuuuguccuuauAUAUUUc 2 8 25 45 [dm3:3R:19332658-19332678:-] 0.5304 120 6 -2.58 -0.1796 MIMAT0000347 dme-miR-283 5740640 CG34289 ucuuaauggucgacUAUAAAu |||||| auauauuucuauauAUAUUUa 2 8 37 57 [dm3:3R:19332646-19332666:-] 0.5304 120 6 -4.23 -0.4093 MIMAT0000399 dme-miR-308 5740640 CG34289 gaGUGUCAUAUUAG-GACACUAa :|: || || | :|||||| ugUAUCGU-UACGCAUUGUGAUa 2 21 3 24 [dm3:3R:19332679-19332700:-] 0.5304 129 6 -12.49 -0.1628 MIMAT0000411 dme-miR-2c 5740640 CG34289 cggGUAGUUUCGACCGACACUAu :|||: | :|||||| uugUAUCGUUACGCAUUGUGAUa 2 21 2 24 [dm3:3R:19332679-19332701:-] 0.5304 128 6 -14.61 -0.1613 MIMAT0005493 dme-miR-977 5740640 CG34289 aaucUGU-UGCACUUAUAGAGu |:| |: | ||||||| uucuAUAUAUAUUUAUAUCUCa 2 18 43 64 [dm3:3R:19332639-19332660:-] 0.5304 144 7 -9.19 -1.1684 MIMAT0005513 dme-miR-994 5740640 CG34289 uagugccgaugauaaAGGAAUc |||||| uugugauauuuuuugUCCUUAu 2 8 17 38 [dm3:3R:19332665-19332686:-] 0.5304 120 6 -7.67 -0.1396

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG34289 RAID00279573 dme-miR-967-5p miRNA MIMAT0005482 CG34289 mRNA 5740640 Prediction 0.1828 CG34289 RAID00384318 dme-miR-11-3p miRNA MIMAT0000116 CG34289 mRNA 5740640 Prediction 0.2202 CG34289 RAID01032514 dme-miR-2a-3p miRNA MIMAT0000106 CG34289 mRNA 5740640 Prediction 0.1828 CG34289 RAID01122539 dme-mir-2a-1 miRNA MI0000117 CG34289 mRNA 5740640 Prediction 0.1828 CG34289 RAID01209121 dme-miR-13b-3p miRNA MIMAT0000119 CG34289 mRNA 5740640 Prediction 0.1828 CG34289 RAID01220082 dme-miR-6-3p miRNA MIMAT0000111 CG34289 mRNA 5740640 Prediction 0.1828 CG34289 RAID01328835 dme-miR-2c-3p miRNA MIMAT0000411 CG34289 mRNA 5740640 Prediction 0.1828 CG34289 RAID02102002 dme-miR-977-3p miRNA MIMAT0005493 CG34289 mRNA 5740640 Prediction 0.2202 CG34289 RAID02261351 dme-miR-283-5p miRNA MIMAT0000347 CG34289 mRNA 5740640 Prediction 0.2202 CG34289 RAID02712757 dme-miR-13a-3p miRNA MIMAT0000118 CG34289 mRNA 5740640 Prediction 0.2202 CG34289 RAID03596251 dme-miR-2b-3p miRNA MIMAT0000107 CG34289 mRNA 5740640 Prediction 0.1828 CG34289 RAID03692215 dme-miR-994-5p miRNA MIMAT0005513 CG34289 mRNA 5740640 Prediction 0.1828 CG34289 RAID04033714 dme-miR-308-3p miRNA MIMAT0000399 CG34289 mRNA 5740640 Prediction 0.2202