DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 35170 mib2 uggucauggacUACAUUAUGAGu || ||||| || agcauacaaauAUUUAAUAGUCa 2 13 300 322 [dm3:2L:19041422-19041444:+] 0.5369 120 0 -8.64 -0.1016 MIMAT0000343 dme-miR-280 35170 mib2 auaGUAAAGUAUACGUUGC-AUUUAUGu ||| || |: |:|||| ||||||| aacCAUGUC-UG-GUAACGAUAAAUACa 2 25 259 284 [dm3:2L:19041381-19041406:+] 0.5162 167 7 -19.13 -0.8984 MIMAT0000343 dme-miR-280 35170 mib2 auaGUAAAGUAUACGUUGCAUUUAUGu :|||| ||| |: |: |||||:| aaaUAUUUAAUA-GUCAUUUAAAUGCa 2 25 307 332 [dm3:2L:19041429-19041454:+] 0.5369 154 0 -10.47 -0.2009 MIMAT0000364 dme-miR-289 35170 mib2 ucagcguccgagGUGAAUUUAUAAAu ||: |||||||| aacuaacuaaagCAUACAAAUAUUUa 2 15 290 315 [dm3:2L:19041412-19041437:+] 0.5369 150 7 -8.16 -1.2342 MIMAT0005475 dme-miR-961 35170 mib2 uagAGUCAAU-GACCACUAGUuu |:| ||| :| |||||| aaaUUA-UUAUUUAUUGAUCAca 3 20 134 155 [dm3:2L:19041256-19041277:+] 0.5312 128 0 -6.57 -0.2676 MIMAT0011784 dme-miR-2279* 35170 mib2 uuaaagUGUGUGUCUAUAAAUu :||:||| ||||||| acuaaaGCAUACAAAUAUUUAa 2 17 295 316 [dm3:2L:19041417-19041438:+] 0.5369 164 7 -13.83 -1.2426 MIMAT0011784 dme-miR-2279* 35170 mib2 uuaaagUGUGUGUCUAUAAAUu |:|:| | |||||| auacaaAUAUAAAAUUAUUUAa 2 17 336 357 [dm3:2L:19041458-19041479:+] 0.5725 124 6 -6.96 -0.3864 MIMAT0011784 dme-miR-2279* 35170 mib2 uuaaagUGUGUGUCUAU-AAAUu | |:| ||||| |||| uacagaAAAUAAAGAUACUUUAu 2 17 392 414 [dm3:2L:19041514-19041536:+] 0.3991 124 0 -6.58 -0.5789 MIMAT0011789 dme-miR-2281 35170 mib2 cgUUAUGACGUCUAUGUCUAu |||:| | ||||| || uaAAUGC-AAAUAUACAAAUa 2 20 325 344 [dm3:2L:19041447-19041466:+] 0.5725 121 0 -7.84 -0.1436 MIMAT0011791 dme-miR-2283 35170 mib2 uaacagCAUAAGUACUAUAAAag | || || |||||| acuaaaGCAUACA-AAUAUUUaa 3 18 295 316 [dm3:2L:19041417-19041438:+] 0.5369 127 0 -1.73 -0.1806 MIMAT0012194 dme-miR-307-as* 35170 mib2 gguagUGUUGGAGGAACUCACu |: |::| ||||||| auaaaAUUAUUUAAUUGAGUGa 2 18 344 365 [dm3:2L:19041466-19041487:+] 0.5232 149 7 -14.18 -1.2897 MIMAT0012196 dme-miR-2489 35170 mib2 ugACGUUUAUG-UUGUAUGUUau | :||||:| ||:|||||| caUUUAAAUGCAAAUAUACAAau 3 21 321 343 [dm3:2L:19041443-19041465:+] 0.5725 151 0 -13.01 -0.3484 MIMAT0012196 dme-miR-2489 35170 mib2 ugacGUUUAUGUUGUAUGUUau :|| || |:||||||| aaacUAACUAAAGCAUACAAau 3 19 289 310 [dm3:2L:19041411-19041432:+] 0.5013 146 0 -9.43 -0.1033 MIMAT0012199 dme-miR-2492 35170 mib2 aaacuuucgagagcUGUUUUGUa |||||||| guauauauacauacACAAAACAa 2 10 76 98 [dm3:2L:19041198-19041220:+] 0.5312 145 7 -7.55 -1.1024 MIMAT0012206 dme-miR-2496* 35170 mib2 augcUA-CCGGAG-AGUG-UGUGCGUg || ||| || ||:| ||||||| caucAUCGGCAUCGUCGCAACACGCAa 2 21 188 214 [dm3:2L:19041310-19041336:+] 0.5312 161 7 -23.18 -0.8786 MIMAT0012207 dme-miR-2496 35170 mib2 auaCGCACA-CACUCA-CGGGGCg |:|| | || | | |||||| cucGUGUCUAGUUAUUAGCCCCGu 2 20 233 256 [dm3:2L:19041355-19041378:+] 0.5312 122 6 -22.22 -1.0778 MIMAT0000114 dme-miR-9a 35170 mib2 agUAUGUCGAUCUAUUGGUUUCu || || || |||||||| caAUUCAAACAG-CAACCAAAGu 2 22 49 70 [dm3:2L:19041171-19041192:+] 0.5312 151 7 -17.94 -0.5285 MIMAT0000332 dme-miR-274 35170 mib2 uaaUGGGCAAU-CACAGCCAGUGUUUu | :: ||| | |:| ||||||| cgaAAUUAUUAUUUAUUGAUCACAAAc 2 24 132 158 [dm3:2L:19041254-19041280:+] 0.5312 154 7 -9.76 -1.0280 MIMAT0000347 dme-miR-283 35170 mib2 ucuuaauggucgacUAUAAAu |||||| acuaaagcauacaaAUAUUUa 2 8 295 315 [dm3:2L:19041417-19041437:+] 0.5369 120 6 -3.82 -0.2291 MIMAT0000355 dme-miR-210 35170 mib2 aucGGCGACAGUGUGCG-UGUu :||: | |||||| ||| gcaUCGUCGCAACACGCAACAa 2 19 196 217 [dm3:2L:19041318-19041339:+] 0.5312 122 0 -20.76 -0.9977 MIMAT0000392 dme-miR-9c 35170 mib2 agAUGUCGAUCUUAUGGUUUCu | || || | ||||||| aaUUCAAACAGCA-ACCAAAGu 2 21 50 70 [dm3:2L:19041172-19041192:+] 0.5312 146 7 -14.32 -0.5014 MIMAT0000395 dme-miR-9b 35170 mib2 guaUGUCGA-UUU-UAG-UGGUUUCu :|| :| ||| | | ||||||| gcaGCAAUUCAAACAGCAACCAAAGu 2 21 45 70 [dm3:2L:19041167-19041192:+] 0.5312 149 7 -16.24 -0.5214 MIMAT0000407 dme-miR-315 35170 mib2 cgaaagACUCGUUGUU-AGUUUu | ||||:||| ||||| gcaggaUCAGCAGCAAUUCAAAc 2 17 36 58 [dm3:2L:19041158-19041180:+] 0.4640 132 0 -12.41 -0.3899 MIMAT0005027 dme-miR-1014 35170 mib2 gacGUUUACUUUUACUUAAAa :|| || |:||||||| auuUAAUUG--AGUGAAUUUc 2 19 352 370 [dm3:2L:19041474-19041492:+] 0.5232 151 7 -7.21 -0.6380

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score mib2 RAID00246277 dme-miR-1014-3p miRNA MIMAT0005027 mib2 mRNA 35170 Prediction 0.2202 mib2 RAID00381803 dme-miR-987-5p miRNA MIMAT0005504 mib2 mRNA 35170 Prediction 0.1828 mib2 RAID00809154 dme-miR-210-3p miRNA MIMAT0000355 mib2 mRNA 35170 Prediction 0.1828 mib2 RAID01181951 dme-miR-9b-5p miRNA MIMAT0000395 mib2 mRNA 35170 Prediction 0.2202 mib2 RAID01368666 dme-miR-315-5p miRNA MIMAT0000407 mib2 mRNA 35170 Prediction 0.1828 mib2 RAID02088500 dme-miR-981-3p miRNA MIMAT0005497 mib2 mRNA 35170 Prediction 0.1828 mib2 RAID02629728 dme-miR-9c-5p miRNA MIMAT0000392 mib2 mRNA 35170 Prediction 0.2381 mib2 RAID02915476 dme-miR-283-5p miRNA MIMAT0000347 mib2 mRNA 35170 Prediction 0.1828 mib2 RAID03224538 dme-miR-274-5p miRNA MIMAT0000332 mib2 mRNA 35170 Prediction 0.2202 mib2 RAID03315294 dme-miR-33-5p miRNA MIMAT0000342 mib2 mRNA 35170 Prediction 0.1828 mib2 RAID03345024 dme-miR-9a-5p miRNA MIMAT0000114 mib2 mRNA 35170 Prediction 0.2202 mib2 RAID03439144 dme-let-7-5p miRNA MIMAT0000396 mib2 mRNA 35170 Prediction 0.1828