DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 33343 chinmo gccccgcucucUUACUAUUCc ||||||||| acaaggaaccuAAUGAUAAGa 2 11 947 967 [dm3:2L:1697096-1697116:+] 0.4890 150 7 -10.99 -0.5840 MIMAT0000330 dme-miR-184* 33343 chinmo gccccgcucucUUACUAUUCc ||||||||| acaaggaaccuAAUGAUAAGa 2 11 239 259 [dm3:2L:1697096-1697116:+] 0.4890 150 7 -10.99 -0.7605 MIMAT0000330 dme-miR-184* 33343 chinmo gccccgcucucUUACUAUUCc ||||||||| acaaggaaccuAAUGAUAAGa 2 11 947 967 [dm3:2L:1697096-1697116:+] 0.4890 150 7 -10.99 -0.5847 MIMAT0000343 dme-miR-280 33343 chinmo auaguaaagUAUACGUUGCAUUUAUGu | | |:|| |||||||: uagcaaagaAAACGUAAAGUAAAUAUa 2 19 2227 2253 [dm3:2L:1698376-1698402:+] 0.6338 146 0 -10.27 -0.1632 MIMAT0000343 dme-miR-280 33343 chinmo auaguaaaGUAUACGUUGCAUUUAUGu || | | ||| |||||| uauaaaaaCAAAAGAAAC-AAAAUACa 2 20 1671 1696 [dm3:2L:1697820-1697845:+] 0.7188 125 6 -7.36 -0.1274 MIMAT0000343 dme-miR-280 33343 chinmo auaguaaagUAUACGUUGCAUUUAUGu | | |:|| |||||||: uagcaaagaAAACGUAAAGUAAAUAUa 2 19 1519 1545 [dm3:2L:1698376-1698402:+] 0.6338 146 0 -10.27 -0.2424 MIMAT0000343 dme-miR-280 33343 chinmo auaguaaaGUAUACGUUGCAUUUAUGu || | | ||| |||||| uauaaaaaCAAAAGAAAC-AAAAUACa 2 20 963 988 [dm3:2L:1697820-1697845:+] 0.7188 125 6 -7.36 -0.1920 MIMAT0000343 dme-miR-280 33343 chinmo auaguaaagUAUACGUUGCAUUUAUGu | | |:|| |||||||: uagcaaagaAAACGUAAAGUAAAUAUa 2 19 2227 2253 [dm3:2L:1698376-1698402:+] 0.6338 146 0 -10.27 -0.1635 MIMAT0000343 dme-miR-280 33343 chinmo auaguaaaGUAUACGUUGCAUUUAUGu || | | ||| |||||| uauaaaaaCAAAAGAAAC-AAAAUACa 2 20 1671 1696 [dm3:2L:1697820-1697845:+] 0.7188 125 6 -7.36 -0.1276 MIMAT0000363 dme-miR-288 33343 chinmo guACUUUACUUUAGCUG-UACUUu | |||| || || ||||| agUAAAAUUUUAUAAACAAUGAAg 2 22 2172 2195 [dm3:2L:1698321-1698344:+] 0.6338 121 0 -6.08 -1.0398 MIMAT0000363 dme-miR-288 33343 chinmo guACUUUACUUUAGCUG-UACUUu | |||| || || ||||| agUAAAAUUUUAUAAACAAUGAAg 2 22 1464 1487 [dm3:2L:1698321-1698344:+] 0.6338 121 0 -6.08 -1.1415 MIMAT0000363 dme-miR-288 33343 chinmo guACUUUACUUUAGCUG-UACUUu | |||| || || ||||| agUAAAAUUUUAUAAACAAUGAAg 2 22 2172 2195 [dm3:2L:1698321-1698344:+] 0.6338 121 0 -6.08 -1.0404 MIMAT0000388 dme-miR-303 33343 chinmo uggucaaaggacaCUUUGGAUUu |:||||||| aacaaggaaacaaGGAACCUAAu 2 11 938 960 [dm3:2L:1697087-1697109:+] 0.4890 146 7 -13.64 -0.1577 MIMAT0000388 dme-miR-303 33343 chinmo uggucaaaggacacUUUGGAUUu :||||||| aaaagagaaacgcuGAACCUAAa 2 10 1704 1726 [dm3:2L:1697853-1697875:+] 0.7188 141 7 -11.80 -0.5659 MIMAT0000388 dme-miR-303 33343 chinmo uggucaaaggacaCUUUGGAUUu |:||||||| aacaaggaaacaaGGAACCUAAu 2 11 230 252 [dm3:2L:1697087-1697109:+] 0.4890 146 7 -13.64 -0.2457 MIMAT0000388 dme-miR-303 33343 chinmo uggucaaaggacacUUUGGAUUu :||||||| aaaagagaaacgcuGAACCUAAa 2 10 996 1018 [dm3:2L:1697853-1697875:+] 0.7188 141 7 -11.80 -0.7234 MIMAT0000388 dme-miR-303 33343 chinmo uggucaaaggacaCUUUGGAUUu |:||||||| aacaaggaaacaaGGAACCUAAu 2 11 938 960 [dm3:2L:1697087-1697109:+] 0.4890 146 7 -13.64 -0.1579 MIMAT0000388 dme-miR-303 33343 chinmo uggucaaaggacacUUUGGAUUu :||||||| aaaagagaaacgcuGAACCUAAa 2 10 1704 1726 [dm3:2L:1697853-1697875:+] 0.7188 141 7 -11.80 -0.5667 MIMAT0005488 dme-miR-972 33343 chinmo cggauuuauaagcauAACAUGu |||||| cuuuguccgguuuuuUUGUACa 2 8 1814 1835 [dm3:2L:1697963-1697984:+] 0.7266 120 6 -9.69 -0.2073 MIMAT0005488 dme-miR-972 33343 chinmo cgGAUUUAUAAGCA-UAA-CAUGu :|:|| :||: | ||| |||| guUUGAACGUUUUUGAUUGGUACc 2 21 627 650 [dm3:2L:1697484-1697507:+] 0.4946 123 0 -8.46 -0.1490 MIMAT0005488 dme-miR-972 33343 chinmo cggauuuauaagcauAACAUGu |||||| cuuuguccgguuuuuUUGUACa 2 8 1106 1127 [dm3:2L:1697963-1697984:+] 0.7266 120 6 -9.69 -0.3026 MIMAT0005488 dme-miR-972 33343 chinmo cggauuuauaagcauAACAUGu |||||| cuuuguccgguuuuuUUGUACa 2 8 1814 1835 [dm3:2L:1697963-1697984:+] 0.7266 120 6 -9.69 -0.2077 MIMAT0005502 dme-miR-985 33343 chinmo acgggcUGGUAACC--UUGUAAAc ||| |||| ||||||| uggcacACCUUUGGAAAACAUUUu 2 17 2421 2444 [dm3:2L:1698570-1698593:+] 0.5728 159 7 -15.30 -0.5910 MIMAT0005502 dme-miR-985 33343 chinmo acGGGCUGGUAACCUUGUAAAc |:: | : || ||||||| ugCUUUAAGGAUGUAACAUUUu 2 21 1966 1987 [dm3:2L:1698115-1698136:+] 0.4733 148 7 -7.60 -0.2651 MIMAT0005502 dme-miR-985 33343 chinmo acgggcUGGUAACC--UUGUAAAc ||| |||| ||||||| uggcacACCUUUGGAAAACAUUUu 2 17 1713 1736 [dm3:2L:1698570-1698593:+] 0.5728 159 7 -15.30 -0.7489 MIMAT0005502 dme-miR-985 33343 chinmo acGGGCUGGUAACCUUGUAAAc |:: | : || ||||||| ugCUUUAAGGAUGUAACAUUUu 2 21 1258 1279 [dm3:2L:1698115-1698136:+] 0.4733 148 7 -7.60 -0.3783 MIMAT0005502 dme-miR-985 33343 chinmo acgggcUGGUAACC--UUGUAAAc ||| |||| ||||||| uggcacACCUUUGGAAAACAUUUu 2 17 2421 2444 [dm3:2L:1698570-1698593:+] 0.5728 159 7 -15.30 -0.5839 MIMAT0005502 dme-miR-985 33343 chinmo acGGGCUGGUAACCUUGUAAAc |:: | : || ||||||| ugCUUUAAGGAUGUAACAUUUu 2 21 1966 1987 [dm3:2L:1698115-1698136:+] 0.4733 148 7 -7.60 -0.2656 MIMAT0005025 dme-miR-1012 33343 chinmo gauaccccuuuuagaaACUGAUu |||||| gaaauauauaauuaaaUGACUAc 2 8 2148 2170 [dm3:2L:1698297-1698319:+] 0.6338 120 6 -5.29 -0.1616 MIMAT0005025 dme-miR-1012 33343 chinmo gauaccccuuuuagaaACUGAUu |||||| gaaauauauaauuaaaUGACUAc 2 8 1440 1462 [dm3:2L:1698297-1698319:+] 0.6338 120 6 -5.29 -0.2402 MIMAT0005025 dme-miR-1012 33343 chinmo gauaccccuuuuagaaACUGAUu |||||| gaaauauauaauuaaaUGACUAc 2 8 2148 2170 [dm3:2L:1698297-1698319:+] 0.6338 120 6 -5.29 -0.1619 MIMAT0011784 dme-miR-2279* 33343 chinmo uuaaagUGUGUGUC-UAUAAAUu |:: | || ||||||| uaaacaAUGAAGAGUAUAUUUAa 2 17 2184 2206 [dm3:2L:1698333-1698355:+] 0.6338 147 7 -8.30 -0.9504 MIMAT0011784 dme-miR-2279* 33343 chinmo uuaaagUGUGUGUC-UAUAAAUu |:: | || ||||||| uaaacaAUGAAGAGUAUAUUUAa 2 17 1476 1498 [dm3:2L:1698333-1698355:+] 0.6338 147 7 -8.30 -1.0719 MIMAT0011784 dme-miR-2279* 33343 chinmo uuaaagUGUGUGUC-UAUAAAUu |:: | || ||||||| uaaacaAUGAAGAGUAUAUUUAa 2 17 2184 2206 [dm3:2L:1698333-1698355:+] 0.6338 147 7 -8.30 -0.9510 MIMAT0011787 dme-miR-2280* 33343 chinmo agUCAAUCGAACCUUCAUUUAa || | | | |||||||| aaAGAAAACGU-AAAGUAAAUa 2 21 2231 2251 [dm3:2L:1698380-1698400:+] 0.6338 146 7 -5.24 -1.2328 MIMAT0011787 dme-miR-2280* 33343 chinmo agucaaucgaaccuUCAUUUaa |||||| auuaaaugacuacuAGUAAAau 3 9 2158 2179 [dm3:2L:1698307-1698328:+] 0.6338 120 0 -3.97 -0.1040 MIMAT0011787 dme-miR-2280* 33343 chinmo agUCAAUCGAACCUUCAUUUAa || | | | |||||||| aaAGAAAACGU-AAAGUAAAUa 2 21 1523 1543 [dm3:2L:1698380-1698400:+] 0.6338 146 7 -5.24 -1.2798 MIMAT0011787 dme-miR-2280* 33343 chinmo agucaaucgaaccuUCAUUUaa |||||| auuaaaugacuacuAGUAAAau 3 9 1450 1471 [dm3:2L:1698307-1698328:+] 0.6338 120 0 -3.97 -0.1583 MIMAT0011787 dme-miR-2280* 33343 chinmo agUCAAUCGAACCUUCAUUUAa || | | | |||||||| aaAGAAAACGU-AAAGUAAAUa 2 21 2231 2251 [dm3:2L:1698380-1698400:+] 0.6338 146 7 -5.24 -1.2331 MIMAT0011787 dme-miR-2280* 33343 chinmo agucaaucgaaccuUCAUUUaa |||||| auuaaaugacuacuAGUAAAau 3 9 2158 2179 [dm3:2L:1698307-1698328:+] 0.6338 120 0 -3.97 -0.1042 MIMAT0011789 dme-miR-2281 33343 chinmo cguuaugacgUCUAUGUCUau | ||||||| aaaagaaacaAAAUACAGAau 3 12 1680 1700 [dm3:2L:1697829-1697849:+] 0.7188 127 0 -7.53 -0.1084 MIMAT0011789 dme-miR-2281 33343 chinmo cguuaugacgUCUAUGUCUau | ||||||| aaaagaaacaAAAUACAGAau 3 12 972 992 [dm3:2L:1697829-1697849:+] 0.7188 127 0 -7.53 -0.1647 MIMAT0011789 dme-miR-2281 33343 chinmo cguuaugacgUCUAUGUCUau | ||||||| aaaagaaacaAAAUACAGAau 3 12 1680 1700 [dm3:2L:1697829-1697849:+] 0.7188 127 0 -7.53 -0.1086 MIMAT0011791 dme-miR-2283 33343 chinmo uaACAGCAUAAGUACUAUAAAAg ||||| ||| ||||||| auUGUCG----CAU-AUAUUUUu 2 22 1456 1473 [dm3:2L:1697605-1697622:+] 0.4946 150 7 -13.06 -0.2947 MIMAT0011791 dme-miR-2283 33343 chinmo uaacagCAUAAGUACU-AUAAAAg ||| :|| | |||||| cguaaaGUAAAUAUAAUUAUUUUu 2 18 2239 2262 [dm3:2L:1698388-1698411:+] 0.6338 121 6 -4.71 -1.1473 MIMAT0011791 dme-miR-2283 33343 chinmo uaACAGCAUAAGUACUAUAAAAg ||||| ||| ||||||| auUGUCG----CAU-AUAUUUUu 2 22 748 765 [dm3:2L:1697605-1697622:+] 0.4946 150 7 -13.06 -0.4216 MIMAT0011791 dme-miR-2283 33343 chinmo uaacagCAUAAGUACU-AUAAAAg ||| :|| | |||||| cguaaaGUAAAUAUAAUUAUUUUu 2 18 1531 1554 [dm3:2L:1698388-1698411:+] 0.6338 121 6 -4.71 -1.2204 MIMAT0011791 dme-miR-2283 33343 chinmo uaACAGCAUAAGUACUAUAAAAg ||||| ||| ||||||| auUGUCG----CAU-AUAUUUUu 2 22 1456 1473 [dm3:2L:1697605-1697622:+] 0.4946 150 7 -13.06 -0.2952 MIMAT0011791 dme-miR-2283 33343 chinmo uaacagCAUAAGUACU-AUAAAAg ||| :|| | |||||| cguaaaGUAAAUAUAAUUAUUUUu 2 18 2239 2262 [dm3:2L:1698388-1698411:+] 0.6338 121 6 -4.71 -1.1477 MIMAT0012194 dme-miR-307-as* 33343 chinmo ggUAGUGUUGGAGGAAC-UCACu ||| ::| ||| ||| |||| ggAUC-UGAGCUCGUUGUAGUGg 2 21 493 514 [dm3:2L:1696642-1696663:+] 0.6567 126 0 -15.58 -0.1015 MIMAT0012194 dme-miR-307-as* 33343 chinmo ggUAGUGUUGGAGGAAC-UCACu ||| ::| ||| ||| |||| ggAUC-UGAGCUCGUUGUAGUGg 2 21 493 514 [dm3:2L:1696642-1696663:+] 0.6567 126 0 -15.58 -0.1017 MIMAT0012198 dme-miR-2491 33343 chinmo ucguugaCGUUUCCGUUGUCGc |||: |||||||| ----gaaGCAGCCGCAACAGCa 2 16 1 18 [dm3:2L:1696150-1696167:+] 0.7901 155 7 -17.50 -0.8505 MIMAT0012198 dme-miR-2491 33343 chinmo ucguugaCGUUUCCGUUGUCGc |||: |||||||| ----gaaGCAGCCGCAACAGCa 2 16 1 18 [dm3:2L:1696150-1696167:+] 0.7901 155 7 -17.50 -1.0235 MIMAT0012199 dme-miR-2492 33343 chinmo aaacUUUCGAGAGCUGUU-UUGUa ||| :| :|:||| |||| ucaaAAACUUGAUGGCAACAACAa 2 20 2343 2366 [dm3:2L:1698492-1698515:+] 0.6338 123 0 -9.98 -0.2993 MIMAT0012199 dme-miR-2492 33343 chinmo aaacuuucgagagcugUUUUGUa |||||| acaauaaaauaguauaAAAACAa 2 8 1659 1681 [dm3:2L:1697808-1697830:+] 0.7188 120 6 -3.19 -0.3227 MIMAT0012199 dme-miR-2492 33343 chinmo aaacUUUCGAGAGCUGUU-UUGUa ||| :| :|:||| |||| ucaaAAACUUGAUGGCAACAACAa 2 20 1635 1658 [dm3:2L:1698492-1698515:+] 0.6338 123 0 -9.98 -0.4216 MIMAT0012199 dme-miR-2492 33343 chinmo aaacuuucgagagcugUUUUGUa |||||| acaauaaaauaguauaAAAACAa 2 8 951 973 [dm3:2L:1697808-1697830:+] 0.7188 120 6 -3.19 -0.4505 MIMAT0012199 dme-miR-2492 33343 chinmo aaacUUUCGAGAGCUGUU-UUGUa ||| :| :|:||| |||| ucaaAAACUUGAUGGCAACAACAa 2 20 2343 2366 [dm3:2L:1698492-1698515:+] 0.6338 123 0 -9.98 -0.2998 MIMAT0012199 dme-miR-2492 33343 chinmo aaacuuucgagagcugUUUUGUa |||||| acaauaaaauaguauaAAAACAa 2 8 1659 1681 [dm3:2L:1697808-1697830:+] 0.7188 120 6 -3.19 -0.3232 MIMAT0012200 dme-miR-2493* 33343 chinmo accGACACACACACAC-ACUCg :| | ||||||| |||| uguUUAUUCGUGUGUGUUGAGg 2 19 1413 1434 [dm3:2L:1697562-1697583:+] 0.4946 126 0 -17.45 -0.1675 MIMAT0012200 dme-miR-2493* 33343 chinmo accGACACACACACAC-ACUCg :| | ||||||| |||| uguUUAUUCGUGUGUGUUGAGg 2 19 705 726 [dm3:2L:1697562-1697583:+] 0.4946 126 0 -17.45 -0.2537 MIMAT0012200 dme-miR-2493* 33343 chinmo accgacacacacaCACACUcg |||||| uaauucuagccaaGUGUGAaa 3 9 1563 1583 [dm3:2L:1698420-1698440:+] 0.6338 120 0 -7.26 -0.1032 MIMAT0012200 dme-miR-2493* 33343 chinmo accGACACACACACAC-ACUCg :| | ||||||| |||| uguUUAUUCGUGUGUGUUGAGg 2 19 1413 1434 [dm3:2L:1697562-1697583:+] 0.4946 126 0 -17.45 -0.1678 MIMAT0012201 dme-miR-2493 33343 chinmo ugcggagcgUGUU--UAUGUGUGCc |||| : ||||||| gacggacagACAAGCGAACACACGa 2 15 1013 1037 [dm3:2L:1697162-1697186:+] 0.5376 145 7 -17.76 -0.6008 MIMAT0012201 dme-miR-2493 33343 chinmo ugcggagcgUGUU--UAUGUGUGCc |||| : ||||||| gacggacagACAAGCGAACACACGa 2 15 305 329 [dm3:2L:1697162-1697186:+] 0.5376 145 7 -17.76 -0.7774 MIMAT0012201 dme-miR-2493 33343 chinmo ugcggagcgUGUU--UAUGUGUGCc |||| : ||||||| gacggacagACAAGCGAACACACGa 2 15 1013 1037 [dm3:2L:1697162-1697186:+] 0.5376 145 7 -17.76 -0.6015 MIMAT0012205 dme-miR-2495* 33343 chinmo ccgcccgUAA--AGUUAAUCCACGGc ||| | ||||:|||||| aaaaacaAUUGGUAAAUUGGGUGCCu 2 18 1410 1435 [dm3:2L:1698267-1698292:+] 0.6338 148 6 -18.26 -0.1453 MIMAT0012212 dme-miR-2499* 33343 chinmo cguaacGCGACUGCAGAUGCGUgc ||| |: | |||||| aacaaaCGCAAAUAU-UACGCAaa 3 19 1594 1616 [dm3:2L:1698451-1698473:+] 0.6338 128 0 -13.67 -0.1304 MIMAT0012214 dme-miR-2500* 33343 chinmo ccauaacAUAUACACAC--AAGGA-AUg ||||| | || ||||| || ugucgcaUAUAUUUUUGAUUUCCUAUAg 2 19 1458 1485 [dm3:2L:1697607-1697634:+] 0.4946 125 0 -5.36 -0.5472 MIMAT0012214 dme-miR-2500* 33343 chinmo ccauaacAUAUACACAC--AAGGA-AUg ||||| | || ||||| || ugucgcaUAUAUUUUUGAUUUCCUAUAg 2 19 750 777 [dm3:2L:1697607-1697634:+] 0.4946 125 0 -5.36 -0.7101 MIMAT0012214 dme-miR-2500* 33343 chinmo ccauaacAUAUACACAC--AAGGA-AUg ||||| | || ||||| || ugucgcaUAUAUUUUUGAUUUCCUAUAg 2 19 1458 1485 [dm3:2L:1697607-1697634:+] 0.4946 125 0 -5.36 -0.5479 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccAGGUGUGUGUUUUAGg |:|: :|||||||| cugcuuUUCGGCUACAAAAUCu 2 17 2052 2073 [dm3:2L:1698201-1698222:+] 0.4961 152 7 -15.62 -0.6648 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccaGGUGUGUGUUUUAGg | | |: ||||||| aaccaaaCGAAAUUCAAAAUCa 2 16 2393 2414 [dm3:2L:1698542-1698563:+] 0.5728 147 7 -14.30 -1.0612 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccaggUGUGUGUUUUAgg | | ||||||| aaaaacaaaAGAAACAAAAUac 3 14 1674 1695 [dm3:2L:1697823-1697844:+] 0.7188 129 0 -5.62 -0.1221 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccAGGUGUGUGUUUUAGg |:|: :|||||||| cugcuuUUCGGCUACAAAAUCu 2 17 1344 1365 [dm3:2L:1698201-1698222:+] 0.4961 152 7 -15.62 -0.8215 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccaGGUGUGUGUUUUAGg | | |: ||||||| aaccaaaCGAAAUUCAAAAUCa 2 16 1685 1706 [dm3:2L:1698542-1698563:+] 0.5728 147 7 -14.30 -1.1576 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccaggUGUGUGUUUUAgg | | ||||||| aaaaacaaaAGAAACAAAAUac 3 14 966 987 [dm3:2L:1697823-1697844:+] 0.7188 129 0 -5.62 -0.1845 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccAGGUGUGUGUUUUAGg |:|: :|||||||| cugcuuUUCGGCUACAAAAUCu 2 17 2052 2073 [dm3:2L:1698201-1698222:+] 0.4961 152 7 -15.62 -0.6655 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccaGGUGUGUGUUUUAGg | | |: ||||||| aaccaaaCGAAAUUCAAAAUCa 2 16 2393 2414 [dm3:2L:1698542-1698563:+] 0.5728 147 7 -14.30 -1.0600 MIMAT0012215 dme-miR-2500 33343 chinmo gacuccaggUGUGUGUUUUAgg | | ||||||| aaaaacaaaAGAAACAAAAUac 3 14 1674 1695 [dm3:2L:1697823-1697844:+] 0.7188 129 0 -5.62 -0.1224 MIMAT0012216 dme-miR-2501 33343 chinmo aaucggguccGUGAGGUUUGAAUg || : ||||||| caaugaaaaaCAAGUGAAACUUAc 2 15 1284 1307 [dm3:2L:1697433-1697456:+] 0.4946 142 7 -11.77 -0.1830 MIMAT0012216 dme-miR-2501 33343 chinmo aaucggguccGUGAGGUUUGAAUg || : ||||||| caaugaaaaaCAAGUGAAACUUAc 2 15 576 599 [dm3:2L:1697433-1697456:+] 0.4946 142 7 -11.77 -0.2797 MIMAT0012216 dme-miR-2501 33343 chinmo aaucggguccGUGAGGUUUGAAUg || : ||||||| caaugaaaaaCAAGUGAAACUUAc 2 15 1284 1307 [dm3:2L:1697433-1697456:+] 0.4946 142 7 -11.77 -0.1833 MIMAT0012217 dme-miR-2501* 33343 chinmo uuucuuucaaacuaaCGUUCUCa ||||||| aagcagcaggcacaaGCAAGAGc 2 9 1122 1144 [dm3:2L:1697271-1697293:+] 0.4946 140 7 -12.13 -0.2446 MIMAT0012217 dme-miR-2501* 33343 chinmo uuucuuucaaacuaaCGUUCUCa ||||||| aagcagcaggcacaaGCAAGAGc 2 9 414 436 [dm3:2L:1697271-1697293:+] 0.4946 140 7 -12.13 -0.3665 MIMAT0012217 dme-miR-2501* 33343 chinmo uuucuuucaaacuaaCGUUCUCa ||||||| aagcagcaggcacaaGCAAGAGc 2 9 1122 1144 [dm3:2L:1697271-1697293:+] 0.4946 140 7 -12.13 -0.2450 MIMAT0000114 dme-miR-9a 33343 chinmo agUAUGUCGAUCU---AUUGGUUUcu :|||| |: | | |||||| ucGUACAAAUGAAAAUUCACCAAAaa 3 22 2448 2473 [dm3:2L:1698597-1698622:+] 0.5728 128 0 -11.39 -0.1573 MIMAT0000114 dme-miR-9a 33343 chinmo agUAUGUCG-AUCUAUUGGUUUCu | |:||: || | ||| |||| uaAAAUAGUAUA-AAAACAAAAGa 2 22 1663 1685 [dm3:2L:1697812-1697834:+] 0.7188 126 0 -8.21 -0.1105 MIMAT0000114 dme-miR-9a 33343 chinmo agUAUGUCGAUCU---AUUGGUUUcu :|||| |: | | |||||| ucGUACAAAUGAAAAUUCACCAAAaa 3 22 1740 1765 [dm3:2L:1698597-1698622:+] 0.5728 128 0 -11.39 -0.2343 MIMAT0000114 dme-miR-9a 33343 chinmo agUAUGUCG-AUCUAUUGGUUUCu | |:||: || | ||| |||| uaAAAUAGUAUA-AAAACAAAAGa 2 22 955 977 [dm3:2L:1697812-1697834:+] 0.7188 126 0 -8.21 -0.1677 MIMAT0000114 dme-miR-9a 33343 chinmo agUAUGUCGAUCU---AUUGGUUUcu :|||| |: | | |||||| ucGUACAAAUGAAAAUUCACCAAAaa 3 22 2448 2473 [dm3:2L:1698597-1698622:+] 0.5728 128 0 -11.39 -0.1465 MIMAT0000114 dme-miR-9a 33343 chinmo agUAUGUCG-AUCUAUUGGUUUCu | |:||: || | ||| |||| uaAAAUAGUAUA-AAAACAAAAGa 2 22 1663 1685 [dm3:2L:1697812-1697834:+] 0.7188 126 0 -8.21 -0.1107 MIMAT0012531 dme-miR-10-3p 33343 chinmo uuUGGAGAGAUCUUGGCUUAAAc :| |:|:|| | ||||||| agGCAUUUUUAUUA-CGAAUUUg 2 22 1076 1097 [dm3:2L:1697225-1697246:+] 0.5073 155 7 -14.84 -0.4698 MIMAT0012531 dme-miR-10-3p 33343 chinmo uuUGGAGAGAUCUUGGCUUAAAc :| |:|:|| | ||||||| agGCAUUUUUAUUA-CGAAUUUg 2 22 368 389 [dm3:2L:1697225-1697246:+] 0.5073 155 7 -14.84 -0.6399 MIMAT0012531 dme-miR-10-3p 33343 chinmo uuuggagagaUCU-UGGCUUAAAc ||| : ||||||| cacgaaaaacAGAUGGCGAAUUUg 2 14 325 348 [dm3:2L:1697182-1697205:+] 0.5288 144 7 -13.36 -0.1481 MIMAT0012531 dme-miR-10-3p 33343 chinmo uuUGGAGAGAUCUUGGCUUAAAc :| |:|:|| | ||||||| agGCAUUUUUAUUA-CGAAUUUg 2 22 1076 1097 [dm3:2L:1697225-1697246:+] 0.5073 155 7 -14.84 -0.4704 MIMAT0000333 dme-miR-275 33343 chinmo gcgcGCGAUGAAGUCCAUGGACu ||| || || ||||||| aaacCGCAACCACAAGUACCUGc 2 20 1635 1657 [dm3:2L:1697784-1697806:+] 0.7188 163 7 -19.73 -0.9114 MIMAT0000333 dme-miR-275 33343 chinmo gcgcGCGAUGAAGUCCAUGGACu ||| || || ||||||| aaacCGCAACCACAAGUACCUGc 2 20 927 949 [dm3:2L:1697784-1697806:+] 0.7188 163 7 -19.73 -1.0404 MIMAT0000333 dme-miR-275 33343 chinmo gcgcGCGAUGAAGUCCAUGGACu ||| || || ||||||| aaacCGCAACCACAAGUACCUGc 2 20 1635 1657 [dm3:2L:1697784-1697806:+] 0.7188 163 7 -19.73 -0.9121 MIMAT0000337 dme-miR-276a 33343 chinmo ucucGUGCCAU-AC-UUCAA-GGAu ||| | | || ||||| ||| acguCACAGAACUGCAAGUUGCCUc 2 19 1488 1512 [dm3:2L:1697637-1697661:+] 0.4946 120 0 -10.50 -0.2671 MIMAT0000337 dme-miR-276a 33343 chinmo ucucGUGCCAU-AC-UUCAA-GGAu ||| | | || ||||| ||| acguCACAGAACUGCAAGUUGCCUc 2 19 780 804 [dm3:2L:1697637-1697661:+] 0.4946 120 0 -10.50 -0.3847 MIMAT0000337 dme-miR-276a 33343 chinmo ucucGUGCCAU-AC-UUCAA-GGAu ||| | | || ||||| ||| acguCACAGAACUGCAAGUUGCCUc 2 19 1488 1512 [dm3:2L:1697637-1697661:+] 0.4946 120 0 -10.50 -0.2676 MIMAT0000391 dme-miR-305 33343 chinmo gucucguggacuacuuCAUGUUa |||||| gaaaacauuuuucuucGUACAAa 2 8 2434 2456 [dm3:2L:1698583-1698605:+] 0.5728 120 6 -8.41 -0.1057 MIMAT0000391 dme-miR-305 33343 chinmo gucucguggacuacuuCAUGUUa |||||| gaaaacauuuuucuucGUACAAa 2 8 1726 1748 [dm3:2L:1698583-1698605:+] 0.5728 120 6 -8.41 -0.1608 MIMAT0000391 dme-miR-305 33343 chinmo gucucguggacuacuuCAUGUUa |||||| gaaaacauuuuucuucGUACAAa 2 8 2434 2456 [dm3:2L:1698583-1698605:+] 0.5728 120 6 -8.41 -0.1087 MIMAT0000392 dme-miR-9c 33343 chinmo agAUGUCGA-UCUUA--UGGUUUcu |||| | | ||| |||||| cgUACAAAUGAAAAUUCACCAAAaa 3 21 2449 2473 [dm3:2L:1698598-1698622:+] 0.5728 134 0 -6.69 -0.1573 MIMAT0000392 dme-miR-9c 33343 chinmo agaUGUCG-AUCUUAUGGUUUCu |:||: || || || |||| aaaAUAGUAUA-AAAACAAAAGa 2 20 1664 1685 [dm3:2L:1697813-1697834:+] 0.7188 124 0 -7.08 -0.1105 MIMAT0000392 dme-miR-9c 33343 chinmo agAUGUCGA-UCUUA--UGGUUUcu |||| | | ||| |||||| cgUACAAAUGAAAAUUCACCAAAaa 3 21 1741 1765 [dm3:2L:1698598-1698622:+] 0.5728 134 0 -6.69 -0.2343 MIMAT0000392 dme-miR-9c 33343 chinmo agaUGUCG-AUCUUAUGGUUUCu |:||: || || || |||| aaaAUAGUAUA-AAAACAAAAGa 2 20 956 977 [dm3:2L:1697813-1697834:+] 0.7188 124 0 -7.08 -0.1677 MIMAT0000392 dme-miR-9c 33343 chinmo agAUGUCGA-UCUUA--UGGUUUcu |||| | | ||| |||||| cgUACAAAUGAAAAUUCACCAAAaa 3 21 2449 2473 [dm3:2L:1698598-1698622:+] 0.5728 134 0 -6.69 -0.1465 MIMAT0000392 dme-miR-9c 33343 chinmo agaUGUCG-AUCUUAUGGUUUCu |:||: || || || |||| aaaAUAGUAUA-AAAACAAAAGa 2 20 1664 1685 [dm3:2L:1697813-1697834:+] 0.7188 124 0 -7.08 -0.1107 MIMAT0000393 dme-miR-306 33343 chinmo aacucucaGUGAUUCAUGGACu ||| ||||||||| accgcaacCAC-AAGUACCUGc 2 15 1637 1657 [dm3:2L:1697786-1697806:+] 0.7188 156 7 -17.78 -0.9081 MIMAT0000393 dme-miR-306 33343 chinmo aacucucaGUGAUUCAUGGACu ||| ||||||||| accgcaacCAC-AAGUACCUGc 2 15 929 949 [dm3:2L:1697786-1697806:+] 0.7188 156 7 -17.78 -1.0376 MIMAT0000393 dme-miR-306 33343 chinmo aacucucaGUGAUUCAUGGACu ||| ||||||||| accgcaacCAC-AAGUACCUGc 2 15 1637 1657 [dm3:2L:1697786-1697806:+] 0.7188 156 7 -17.78 -0.9088 MIMAT0000395 dme-miR-9b 33343 chinmo guAUGUCGAUUUU--AGUGGUUUcu |||| |:||| |||||||| cgUACAAAUGAAAAUUCACCAAAaa 3 22 2449 2473 [dm3:2L:1698598-1698622:+] 0.5728 152 0 -18.16 -0.1558 MIMAT0000395 dme-miR-9b 33343 chinmo guAUGUCGAUUUU--AGUGGUUUcu |||| |:||| |||||||| cgUACAAAUGAAAAUUCACCAAAaa 3 22 1741 1765 [dm3:2L:1698598-1698622:+] 0.5728 152 0 -18.16 -0.2322 MIMAT0000395 dme-miR-9b 33343 chinmo guaUGUCG-AUUUUAGUGGUUUCu |:||: ||||| || |||| aaaAUAGUAUAAAA--ACAAAAGa 2 21 956 977 [dm3:2L:1697813-1697834:+] 0.7188 128 0 -9.39 -0.1512 MIMAT0000395 dme-miR-9b 33343 chinmo guAUGUCGAUUUU--AGUGGUUUcu |||| |:||| |||||||| cgUACAAAUGAAAAUUCACCAAAaa 3 22 2449 2473 [dm3:2L:1698598-1698622:+] 0.5728 152 0 -18.16 -0.1451 MIMAT0000407 dme-miR-315 33343 chinmo cgAAAGACUCGUUGUUAGUUUu |||| |:|:: :||||||| guUUUCAGGGUGCUAAUCAAAc 2 21 1263 1284 [dm3:2L:1697412-1697433:+] 0.4946 168 7 -15.91 -0.2299 MIMAT0000407 dme-miR-315 33343 chinmo cgaaagacucGUUGUUAGUUUu ||| ||||||| aaacgaaauuCAA-AAUCAAAc 2 13 2397 2417 [dm3:2L:1698546-1698566:+] 0.5728 146 7 -5.54 -0.6292 MIMAT0000407 dme-miR-315 33343 chinmo cgAAAGACUCGUUGUUAGUUUu |||| |:|:: :||||||| guUUUCAGGGUGCUAAUCAAAc 2 21 555 576 [dm3:2L:1697412-1697433:+] 0.4946 168 7 -15.91 -0.3452 MIMAT0000407 dme-miR-315 33343 chinmo cgaaagacucGUUGUUAGUUUu ||| ||||||| aaacgaaauuCAA-AAUCAAAc 2 13 1689 1709 [dm3:2L:1698546-1698566:+] 0.5728 146 7 -5.54 -0.7870 MIMAT0000407 dme-miR-315 33343 chinmo cgAAAGACUCGUUGUUAGUUUu |||| |:|:: :||||||| guUUUCAGGGUGCUAAUCAAAc 2 21 1263 1284 [dm3:2L:1697412-1697433:+] 0.4946 168 7 -15.91 -0.2303 MIMAT0000407 dme-miR-315 33343 chinmo cgaaagacucGUUGUUAGUUUu ||| ||||||| aaacgaaauuCAA-AAUCAAAc 2 13 2397 2417 [dm3:2L:1698546-1698566:+] 0.5728 146 7 -5.54 -0.6259 MIMAT0000408 dme-miR-316 33343 chinmo gcgGUCAU-UCGCCUUUUUCUgu :|||| | |||||| aaaUAGUAUAAAAACAAAAGAaa 3 20 1665 1687 [dm3:2L:1697814-1697836:+] 0.7188 122 0 -7.66 -0.1568 MIMAT0000408 dme-miR-316 33343 chinmo gcgGUCAUUCGCCUUUUUCUgu ||| || : |||||||| auaCAG-AA-UAGAAAAAGAga 3 20 984 1003 [dm3:2L:1697841-1697860:+] 0.7188 135 0 -11.60 -0.1417 MIMAT0000408 dme-miR-316 33343 chinmo gcgGUCAU-UCGCCUUUUUCUgu :|||| | |||||| aaaUAGUAUAAAAACAAAAGAaa 3 20 957 979 [dm3:2L:1697814-1697836:+] 0.7188 122 0 -7.66 -0.2335 MIMAT0000408 dme-miR-316 33343 chinmo gcgGUCAU-UCGCCUUUUUCUgu :|||| | |||||| aaaUAGUAUAAAAACAAAAGAaa 3 20 1665 1687 [dm3:2L:1697814-1697836:+] 0.7188 122 0 -7.66 -0.1571 MIMAT0005484 dme-miR-968 33343 chinmo guugggAAAUUACCUAUGAUGAau || |||| |||||| auauaaUUAAAUG---ACUACUag 3 19 2153 2173 [dm3:2L:1698302-1698322:+] 0.6338 130 0 -8.01 -0.1145 MIMAT0005484 dme-miR-968 33343 chinmo guugggAAAUUACCUAUGAUGAau || |||| |||||| auauaaUUAAAUG---ACUACUag 3 19 1445 1465 [dm3:2L:1698302-1698322:+] 0.6338 130 0 -8.01 -0.1735 MIMAT0005484 dme-miR-968 33343 chinmo guugggAAAUUACCUAUGAUGAau || |||| |||||| auauaaUUAAAUG---ACUACUag 3 19 2153 2173 [dm3:2L:1698302-1698322:+] 0.6338 130 0 -8.01 -0.1147 MIMAT0005497 dme-miR-981 33343 chinmo acguccaaagcaGCUGUUGCUu | ||||||| cgacgaccacaaCCACAACGAa 2 11 368 389 [dm3:2L:1696517-1696538:+] 0.5896 142 7 -11.34 -0.1739 MIMAT0005497 dme-miR-981 33343 chinmo acguccaaagcaGCUGUUGCUu | ||||||| cgacgaccacaaCCACAACGAa 2 11 368 389 [dm3:2L:1696517-1696538:+] 0.5896 142 7 -11.34 -0.1742 MIMAT0005507 dme-miR-137 33343 chinmo gaUGCACAUAAGAG-UUC-GUUAu |: |||:||:|: ||| |||| gaAUUUGUGUUUUUGAAGCCAAUc 2 21 1091 1114 [dm3:2L:1697240-1697263:+] 0.4946 131 0 -11.94 -0.2738 MIMAT0005507 dme-miR-137 33343 chinmo gaUGCACAUAAGAG-UUC-GUUAu |: |||:||:|: ||| |||| gaAUUUGUGUUUUUGAAGCCAAUc 2 21 383 406 [dm3:2L:1697240-1697263:+] 0.4946 131 0 -11.94 -0.4050 MIMAT0005507 dme-miR-137 33343 chinmo gaUGCACAUAAGAG-UUC-GUUAu |: |||:||:|: ||| |||| gaAUUUGUGUUUUUGAAGCCAAUc 2 21 1091 1114 [dm3:2L:1697240-1697263:+] 0.4946 131 0 -11.94 -0.2742 MIMAT0005520 dme-miR-1000 33343 chinmo ugacgacacuguccUGUUAUa |||||| cacaaguaccugcaACAAUAa 2 8 937 957 [dm3:2L:1697794-1697814:+] 0.7188 120 6 -5.67 -0.1286 MIMAT0005019 dme-miR-1006 33343 chinmo gauacuuauucuuuaGCUUAAAu ||||||| caggcauuuuuauuaCGAAUUUg 2 9 1075 1097 [dm3:2L:1697224-1697246:+] 0.5073 140 7 -8.85 -0.4995 MIMAT0005019 dme-miR-1006 33343 chinmo gaUACUUAUUCUUUA--GCUUAAAu | ||| || |:|| ||||||| acACGAAAAACAGAUGGCGAAUUUg 2 22 324 348 [dm3:2L:1697181-1697205:+] 0.5288 164 7 -11.22 -0.1438 MIMAT0005019 dme-miR-1006 33343 chinmo gauacuuauucuuuaGCUUAAAu ||||||| caggcauuuuuauuaCGAAUUUg 2 9 367 389 [dm3:2L:1697224-1697246:+] 0.5073 140 7 -8.85 -0.6724 MIMAT0005019 dme-miR-1006 33343 chinmo gauacuuauucuuuaGCUUAAAu ||||||| caggcauuuuuauuaCGAAUUUg 2 9 1075 1097 [dm3:2L:1697224-1697246:+] 0.5073 140 7 -8.85 -0.5002

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score chinmo RAID00312678 dme-miR-976-3p miRNA MIMAT0005492 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID00385400 dme-miR-998-3p miRNA MIMAT0005518 chinmo mRNA 33343 Prediction 0.2202 chinmo RAID00835046 dme-miR-978-3p miRNA MIMAT0005494 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID01088468 dme-miR-276a-3p miRNA MIMAT0000337 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID01148654 dme-miR-995-3p miRNA MIMAT0005514 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID01322899 dme-miR-9b-5p miRNA MIMAT0000395 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID01544864 dme-miR-961-5p miRNA MIMAT0005475 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID01822644 dme-miR-1005-3p miRNA MIMAT0005018 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID01851543 dme-miR-33-5p miRNA MIMAT0000342 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID02032699 dme-miR-306-5p miRNA MIMAT0000393 chinmo mRNA 33343 Prediction 0.2381 chinmo RAID02088286 dme-miR-1006-3p miRNA MIMAT0005019 chinmo mRNA 33343 Prediction 0.2202 chinmo RAID02183488 dme-miR-9a-5p miRNA MIMAT0000114 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID02790008 dme-miR-285-3p miRNA MIMAT0000356 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID02921582 dme-miR-137-3p miRNA MIMAT0005507 chinmo mRNA 33343 Prediction 0.2202 chinmo RAID02954254 dme-miR-275-3p miRNA MIMAT0000333 chinmo mRNA 33343 Prediction 0.2202 chinmo RAID02998902 dme-miR-1000-5p miRNA MIMAT0005520 chinmo mRNA 33343 Prediction 0.2202 chinmo RAID03259526 dme-miR-10-3p miRNA MIMAT0012531 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03308258 dme-miR-305-5p miRNA MIMAT0000391 chinmo mRNA 33343 Prediction 0.2202 chinmo RAID03317235 dme-miR-4-3p miRNA MIMAT0000109 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03326925 dme-miR-315-5p miRNA MIMAT0000407 chinmo mRNA 33343 Prediction 0.2381 chinmo RAID03476902 dme-miR-971-3p miRNA MIMAT0005487 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03615186 dme-miR-316-5p miRNA MIMAT0000408 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03629146 dme-miR-980-3p miRNA MIMAT0005496 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03651409 dme-miR-982-5p miRNA MIMAT0005498 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03753287 dme-miR-972-3p miRNA MIMAT0005488 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03819525 dme-miR-9c-5p miRNA MIMAT0000392 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03854476 dme-miR-985-3p miRNA MIMAT0005502 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03917373 dme-miR-968-5p miRNA MIMAT0005484 chinmo mRNA 33343 Prediction 0.1828 chinmo RAID03918212 dme-miR-981-3p miRNA MIMAT0005497 chinmo mRNA 33343 Prediction 0.1828