DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43754 CG42233 auAGUAAAGUAUACGUU-----GCAUUUAUGu ||:| ::| | ||| : ||||||| uuUCGUAGUGUCUACAAUAAUUUAUAAAUACa 2 26 415 446 [dm3:3R:27625448-27625479:-] 0.4590 144 7 -10.80 -1.2733 MIMAT0000343 dme-miR-280 43754 CG42233 auaguaaagUAUACGUUG-CAUUUAUGu ||| | | ||||||| ugcacgaaaAUAAAGAUCUUUAAAUACa 2 19 512 539 [dm3:3R:27625355-27625382:-] 0.4246 141 7 -11.08 -1.1143 MIMAT0000364 dme-miR-289 43754 CG42233 ucagcGUCCGAGGUGAAU--UUAUAAAu :|||:||: :| | ||||||| caaauUAGGUUCU-UUAAGCAAUAUUUu 2 22 189 215 [dm3:3R:27625679-27625705:-] 0.4069 154 7 -13.17 -0.5350 MIMAT0005491 dme-miR-975 43754 CG42233 uauguccuacauccuuCACAAAu |||||| cuugcuaagcguaaauGUGUUUa 2 8 41 63 [dm3:3R:27625831-27625853:-] 0.4895 120 6 -7.92 -0.1038 MIMAT0005018 dme-miR-1005 43754 CG42233 gacgcUUAAUUUCUAAGGUCu || || ||||||:| uaugaAAGCAAUGAUUCCGGu 2 17 11 31 [dm3:3R:27625863-27625883:-] 0.4252 140 0 -14.63 -0.1218 MIMAT0005026 dme-miR-1013 43754 CG42233 gcucaagccGUAUGAAAAUa | |||||||| cuauucacuCUUACUUUUAa 2 12 76 95 [dm3:3R:27625799-27625818:-] 0.4790 147 7 -6.10 -0.9471 MIMAT0011786 dme-miR-2280 43754 CG42233 uauaAAAUAACGGUUCGAUUCu |||| | | :||||||| ugcgUUUA-UACAGAGCUAAGc 2 19 276 296 [dm3:3R:27625598-27625618:-] 0.4156 156 7 -11.33 -0.4164 MIMAT0011788 dme-miR-2281* 43754 CG42233 aaCGUAG-ACGUCGACGUCUAUUa |: || | | | ||||||| aaGUCUCAUAAACCAACAGAUAAg 2 22 449 472 [dm3:3R:27625422-27625445:-] 0.4442 144 7 -9.84 -0.8090 MIMAT0011791 dme-miR-2283 43754 CG42233 uaacagcAUAAGUAC--UAUAAAAg | ||:| | ||||||| auuagguUCUUUAAGCAAUAUUUUu 2 17 192 216 [dm3:3R:27625678-27625702:-] 0.4069 147 7 -3.33 -0.7847 MIMAT0012196 dme-miR-2489 43754 CG42233 ugacgUUUAUGUUG-UA-UGUUAu ||| ::||: || ||||| ucauaAAAAGUAAUAAUAACAAUg 2 18 125 148 [dm3:3R:27625746-27625769:-] 0.4684 120 0 -9.05 -0.8599 MIMAT0012196 dme-miR-2489 43754 CG42233 ugacguuuauguuguAUGUUAu |||||| aauuuucguagugucUACAAUa 2 8 412 433 [dm3:3R:27625461-27625482:-] 0.4543 120 6 -7.00 -0.1276 MIMAT0012199 dme-miR-2492 43754 CG42233 aaACUUUCGAGAGCUGUUUUGUa | | | ||| | |||||||| uuUUACACCUC-CAACAAAACAa 2 22 330 351 [dm3:3R:27625543-27625564:-] 0.4240 159 7 -11.55 -1.2094 MIMAT0012202 dme-miR-2494* 43754 CG42233 aaggguuagaccacGUGAAUg |||||| aagaucuuuaaauaCACUUAa 2 8 524 544 [dm3:3R:27625350-27625370:-] 0.4935 120 6 -9.78 -0.5665 MIMAT0000114 dme-miR-9a 43754 CG42233 agUAUGUCGAUCUA-UUGGUU-UCu ||| ||: || |||||| || acAUAAAGUCUCAUAAACCAACAGa 2 22 444 468 [dm3:3R:27625426-27625450:-] 0.4442 124 0 -13.84 -1.1950 MIMAT0000352 dme-miR-79 43754 CG42233 uacgaaaccAUU-AGAUCGAAAu ||| |:||||||| guauucauuUAAUUUUAGCUUUu 2 14 310 332 [dm3:3R:27625562-27625584:-] 0.4240 152 7 -8.17 -1.1253 MIMAT0005470 dme-miR-957 43754 CG42233 cggagucaaaaccuGCCAAAGu ||||||: gaaagcaaugauucCGGUUUUa 2 9 14 35 [dm3:3R:27625859-27625880:-] 0.4252 124 0 -10.56 -0.2316 MIMAT0005483 dme-miR-1002 43754 CG42233 agcgggaaacAUAGGUGAUGAAUu | |:: :|||||| aacaaaacaaUUUUUUUUACUUAu 2 15 342 365 [dm3:3R:27625529-27625552:-] 0.4324 130 6 -5.70 -0.1407 MIMAT0005504 dme-miR-987 43754 CG42233 guaGUUAGGUCUGAUAAAUGAAAu | ||:| ||| ||||||| acaCUAUUC--ACU-CUUACUUUu 2 22 73 93 [dm3:3R:27625801-27625821:-] 0.4790 148 7 -9.44 -0.5074 MIMAT0005507 dme-miR-137 43754 CG42233 gaugcacaUAAG-AGUUCGUUAu :||| |:||||||| caaauuagGUUCUUUAAGCAAUa 2 15 189 211 [dm3:3R:27625683-27625705:-] 0.4069 153 7 -13.78 -1.1863 MIMAT0005507 dme-miR-137 43754 CG42233 gaugcacaUAAGAGUUCGUUAu || : ||||||| uuguacccAUAUGAAAGCAAUg 2 15 2 23 [dm3:3R:27625871-27625892:-] 0.3610 142 7 -10.06 -0.5339 MIMAT0005516 dme-miR-252 43754 CG42233 gaggacgccgugaucAUGAAUc |||||| caaaacaauuuuuuuUACUUAu 2 8 344 365 [dm3:3R:27625529-27625550:-] 0.4324 120 6 -2.30 -0.1463

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG42233 RAID00095099 dme-miR-955-5p miRNA MIMAT0005466 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID00118515 dme-miR-961-5p miRNA MIMAT0005475 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID00189750 dme-miR-284-3p miRNA MIMAT0000348 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID00427066 dme-miR-975-5p miRNA MIMAT0005491 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID00503850 dme-miR-309-3p miRNA MIMAT0000401 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID00791457 dme-miR-1013-3p miRNA MIMAT0005026 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID00963570 dme-miR-1002-5p miRNA MIMAT0005483 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID01546697 dme-miR-3-3p miRNA MIMAT0000108 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID01690004 dme-miR-137-3p miRNA MIMAT0005507 CG42233 mRNA 43754 Prediction 0.2202 CG42233 RAID01698556 dme-miR-318-3p miRNA MIMAT0000410 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID01820621 dme-miR-33-5p miRNA MIMAT0000342 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID01847576 dme-miR-987-5p miRNA MIMAT0005504 CG42233 mRNA 43754 Prediction 0.2202 CG42233 RAID03040088 dme-miR-957-3p miRNA MIMAT0005470 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID03318749 dme-miR-9a-5p miRNA MIMAT0000114 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID03578872 dme-miR-252-5p miRNA MIMAT0005516 CG42233 mRNA 43754 Prediction 0.1828 CG42233 RAID03984533 dme-miR-79-3p miRNA MIMAT0000352 CG42233 mRNA 43754 Prediction 0.2202 CG42233 RAID04032689 dme-miR-1000-5p miRNA MIMAT0005520 CG42233 mRNA 43754 Prediction 0.1828