DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005502 dme-miR-985 37335 rig acgggcugguaaccUUGUAAAc ||||||| ----gccuuaaaucAACAUUUu 2 9 1 18 [dm3:2R:16521678-16521695:-] 0.4546 140 7 -7.62 -0.7367 MIMAT0005521 dme-miR-1001 37335 rig acuaggaacccUCAAAUGGGu | ||||||| uauuuuaauuuAAUUUACCCu 2 11 194 214 [dm3:2R:16521482-16521502:-] 0.4811 142 7 -8.55 -1.2542 MIMAT0005026 dme-miR-1013 37335 rig gcucAAGCCGUAUGAAAAUa ||:| :||||||||| cgccUUUGCUAUACUUUUAu 2 17 177 196 [dm3:2R:16521500-16521519:-] 0.4533 164 7 -14.79 -1.1098 MIMAT0005026 dme-miR-1013 37335 rig gcucaagcCGUAUGAAAAUa ||:|||||||| uuuuguaaGCGUACUUUUAg 2 13 16 35 [dm3:2R:16521661-16521680:-] 0.4540 156 7 -12.96 -0.1312 MIMAT0012196 dme-miR-2489 37335 rig ugACGUUUAUGUUG-UAUGUUAu || |||| | | ||||||| uuUG-AAAUCCCCCGAUACAAUc 2 21 64 85 [dm3:2R:16521611-16521632:-] 0.4533 153 7 -6.06 -0.3464 MIMAT0012196 dme-miR-2489 37335 rig ugacGUUUAUGUUGUAUGU-UAu ::||||||| ||||| || aagaUGAAUACAAGAUACAUAUa 2 19 221 243 [dm3:2R:16521453-16521475:-] 0.5089 138 0 -13.38 -1.0871 MIMAT0012201 dme-miR-2493 37335 rig ugcggagcgUGUUUAUGUGUGcc ||||| |||||| gcuaguaaaACAAACACACACaa 3 15 258 280 [dm3:2R:16521416-16521438:-] 0.5089 142 0 -13.27 -0.1819 MIMAT0012214 dme-miR-2500* 37335 rig ccaUAACAUAUACACACAAGG-AAUg ||| || | ||| |||| ||| ggcAUU-UACAAAUGUUUUCCAUUAa 2 23 109 133 [dm3:2R:16521563-16521587:-] 0.4533 128 0 -6.83 -1.1419 MIMAT0000319 dme-miR-263a 37335 rig caCUUAAGAAGGUCAC----GGUAAUUg | ||| | | | || ||||||| agGCAUU-UACAAAUGUUUUCCAUUAAu 2 23 108 134 [dm3:2R:16521562-16521588:-] 0.4533 143 7 -11.59 -1.0330 MIMAT0000338 dme-miR-277 37335 rig acAGCAUGGUCUAUCACGUAAAu || ||::|| || |||||| uaUC-UAUUAGUUA-GGCAUUUa 2 22 96 116 [dm3:2R:16521580-16521600:-] 0.4533 129 6 -16.64 -0.1084 MIMAT0000406 dme-miR-314 37335 rig ggcuUGAAUAAC--CGAGCUUAu || |||| :|||||| acacACAAAUUGAAUUUCGAAUa 2 18 273 295 [dm3:2R:16521401-16521423:-] 0.5089 132 6 -11.48 -0.2295 MIMAT0005476 dme-miR-962 37335 rig cugucguAGUUAAA-GAGAU-GGAAUa |:||||| |:|| ||||| uuuuauuUUAAUUUAAUUUACCCUUAa 2 19 191 217 [dm3:2R:16521479-16521505:-] 0.4811 129 0 -8.47 -1.2524 MIMAT0005479 dme-miR-932 37335 rig gacguuacgugAUGCCUUAACu |::||||||| gccagaaacugUGUGGAAUUGa 2 12 142 163 [dm3:2R:16521533-16521554:-] 0.4533 147 7 -17.41 -0.9818 MIMAT0005487 dme-miR-971 37335 rig agUGA-CAUUCUUCAUUGUG-GUu :|| |||| || ||||| || uaGCUAGUAA-AACAAACACACAc 2 21 256 278 [dm3:2R:16521418-16521440:-] 0.5089 121 0 -8.06 -1.2053 MIMAT0005519 dme-miR-999 37335 rig ucUGUGUCAGA-AUG-UCA-AUUGu | || | || ||| ||| |||| ugAAACUGGCUGUACUAGUGUAACu 2 21 37 61 [dm3:2R:16521635-16521659:-] 0.4533 122 0 -8.31 -0.6297 MIMAT0005027 dme-miR-1014 37335 rig gacguuuacUUUUACUUAAAa ||| ||||||| aacacacacAAAUUGAAUUUc 2 13 270 290 [dm3:2R:16521406-16521426:-] 0.5089 152 7 -6.71 -0.9748

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rig RAID00337686 dme-miR-932-5p miRNA MIMAT0005479 rig mRNA 37335 Prediction 0.1828 rig RAID01557558 dme-miR-971-3p miRNA MIMAT0005487 rig mRNA 37335 Prediction 0.1828 rig RAID01718826 dme-miR-1014-3p miRNA MIMAT0005027 rig mRNA 37335 Prediction 0.1828 rig RAID01902296 dme-miR-263a-5p miRNA MIMAT0000319 rig mRNA 37335 Prediction 0.1828 rig RAID02921477 dme-miR-277-3p miRNA MIMAT0000338 rig mRNA 37335 Prediction 0.1828 rig RAID02980756 dme-miR-962-5p miRNA MIMAT0005476 rig mRNA 37335 Prediction 0.1828 rig RAID03181646 dme-miR-999-3p miRNA MIMAT0005519 rig mRNA 37335 Prediction 0.1828 rig RAID03238490 dme-miR-314-3p miRNA MIMAT0000406 rig mRNA 37335 Prediction 0.1828