DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39617 CG42247 auaguaaaguauaCGUUGCAUUUAUGu || |: ||||||| aaacgacgaaaccGC-AUAUAAAUACu 2 15 489 514 [dm3:3L:14935767-14935792:+] 0.5337 144 7 -9.83 -0.9704 MIMAT0000343 dme-miR-280 39617 CG42247 auAGUAAAGUAUACGUUGC---AUUUAUgu |: | |:||| ||: :| |||||| acUUUUAUUAUAAGCGUUGAAAUAAAUAaa 3 26 687 716 [dm3:3L:14935965-14935994:+] 0.6121 140 0 -9.75 -0.1623 MIMAT0000343 dme-miR-280 39617 CG42247 auaguaaaguauaCGUUGCAUUUAUGu || |: ||||||| aaacgacgaaaccGC-AUAUAAAUACu 2 15 489 514 [dm3:3L:14935767-14935792:+] 0.5337 144 7 -9.83 -0.9708 MIMAT0000364 dme-miR-289 39617 CG42247 ucagcguccgaggugaaUUUAUAAau ||||||| uugguuuuagacgaacaAAAUAUUga 3 10 209 234 [dm3:3L:14935487-14935512:+] 0.5405 125 0 -6.92 -0.1592 MIMAT0000364 dme-miR-289 39617 CG42247 ucagcguccgaggugaaUUUAUAAau ||||||| uugguuuuagacgaacaAAAUAUUga 3 10 209 234 [dm3:3L:14935487-14935512:+] 0.5405 125 0 -6.92 -0.1594 MIMAT0005465 dme-miR-954 39617 CG42247 ugugUGUUGCGUUGUGG-GUCu :|||| |:|||| ||| acuaGCAACCGAGCACCGCAGu 2 18 314 335 [dm3:3L:14935592-14935613:+] 0.4652 125 0 -18.45 -0.1135 MIMAT0005465 dme-miR-954 39617 CG42247 ugugUGUUGCGUUGUGG-GUCu :|||| |:|||| ||| acuaGCAACCGAGCACCGCAGu 2 18 314 335 [dm3:3L:14935592-14935613:+] 0.4652 125 0 -18.45 -0.1136 MIMAT0005488 dme-miR-972 39617 CG42247 cggaUUUAUAAGCAUAAC-AUGu :|||:| |||||| ||| uaucGAAUGU--GUAUUGUUACa 2 19 663 683 [dm3:3L:14935941-14935961:+] 0.6121 123 0 -13.67 -1.0367 MIMAT0005488 dme-miR-972 39617 CG42247 cggaUUUAUAAGCAUAAC-AUGu :|||:| |||||| ||| uaucGAAUGU--GUAUUGUUACa 2 19 663 683 [dm3:3L:14935941-14935961:+] 0.6121 123 0 -13.67 -1.0379 MIMAT0005502 dme-miR-985 39617 CG42247 acgggCUGGUAACCUUGUAAAc || | | ||||||| uacgaGAGAAAUUCAACAUUUu 2 18 255 276 [dm3:3L:14935533-14935554:+] 0.4986 145 7 -6.21 -0.4890 MIMAT0005502 dme-miR-985 39617 CG42247 acgggCUGGUAACCUUGUAAAc || | | ||||||| uacgaGAGAAAUUCAACAUUUu 2 18 255 276 [dm3:3L:14935533-14935554:+] 0.4986 145 7 -6.21 -0.4894 MIMAT0005509 dme-miR-991 39617 CG42247 ugaaagguuUGAUGUUGAAAuu || :||||||| uguauuguuACAGCAACUUUua 3 14 672 693 [dm3:3L:14935950-14935971:+] 0.6121 133 0 -8.11 -0.1462 MIMAT0005509 dme-miR-991 39617 CG42247 ugaaagguuUGAUGUUGAAAuu || :||||||| uguauuguuACAGCAACUUUua 3 14 672 693 [dm3:3L:14935950-14935971:+] 0.6121 133 0 -8.11 -0.1473 MIMAT0005018 dme-miR-1005 39617 CG42247 gacgcuuaauuucuAAGGUCu |||||| auaaauacuucaucUUCCAGa 2 8 506 526 [dm3:3L:14935784-14935804:+] 0.5337 120 6 -8.98 -0.1476 MIMAT0005018 dme-miR-1005 39617 CG42247 gacgcuuaauuucuAAGGUCu |||||| auaaauacuucaucUUCCAGa 2 8 506 526 [dm3:3L:14935784-14935804:+] 0.5337 120 6 -8.98 -0.1477 MIMAT0005022 dme-miR-1009 39617 CG42247 gacuuuacaUUGUUAAAAACUCu |: |:|||||||| acauuuucgAGAAGUUUUUGAGa 2 15 270 292 [dm3:3L:14935548-14935570:+] 0.4652 154 7 -12.09 -0.9477 MIMAT0005022 dme-miR-1009 39617 CG42247 gacuuuacauUGUUAA-AAACUCu ||| || |||||| ccuacgcuccACAUUUGUUUGAGc 2 14 416 439 [dm3:3L:14935694-14935717:+] 0.4652 121 6 -7.39 -0.2063 MIMAT0005022 dme-miR-1009 39617 CG42247 gacuuuacaUUGUUAAAAACUCu |: |:|||||||| acauuuucgAGAAGUUUUUGAGa 2 15 270 292 [dm3:3L:14935548-14935570:+] 0.4652 154 7 -12.09 -0.9481 MIMAT0005022 dme-miR-1009 39617 CG42247 gacuuuacauUGUUAA-AAACUCu ||| || |||||| ccuacgcuccACAUUUGUUUGAGc 2 14 416 439 [dm3:3L:14935694-14935717:+] 0.4652 121 6 -7.39 -0.2065 MIMAT0005026 dme-miR-1013 39617 CG42247 gcuCAA-GCCGUAUGAAAAUa ||| | ||| ||||||| auuGUUACAGCA-ACUUUUAu 2 18 675 694 [dm3:3L:14935953-14935972:+] 0.6121 154 7 -10.11 -1.0771 MIMAT0005026 dme-miR-1013 39617 CG42247 gcuCAA-GCCGUAUGAAAAUa ||| | ||| ||||||| auuGUUACAGCA-ACUUUUAu 2 18 675 694 [dm3:3L:14935953-14935972:+] 0.6121 154 7 -10.11 -1.0780 MIMAT0012198 dme-miR-2491 39617 CG42247 ucguUGACGUUUCCGU-UGUCGc :| ||||| || ||||| aaauGCAGCAAAUCCAGACAGCa 2 19 550 572 [dm3:3L:14935828-14935850:+] 0.5337 126 0 -12.05 -0.7003 MIMAT0012198 dme-miR-2491 39617 CG42247 ucguUGACGUUUCCGU-UGUCGc :| ||||| || ||||| aaauGCAGCAAAUCCAGACAGCa 2 19 550 572 [dm3:3L:14935828-14935850:+] 0.5337 126 0 -12.05 -0.7008 MIMAT0012209 dme-miR-2497 39617 CG42247 gacguuUGUAACAU-UUACAACa |: || | ||||||| uacuucAUCUUCCAGAAUGUUGu 2 17 511 533 [dm3:3L:14935789-14935811:+] 0.5337 143 7 -10.01 -0.3811 MIMAT0012209 dme-miR-2497 39617 CG42247 gacguuUGUAACAU-UUACAACa |: || | ||||||| uacuucAUCUUCCAGAAUGUUGu 2 17 511 533 [dm3:3L:14935789-14935811:+] 0.5337 143 7 -10.01 -0.3815 MIMAT0012211 dme-miR-2498 39617 CG42247 uucauucugcccUUACGGUCAAa :| ||||||| gccgcccaguacGAGGCCAGUUa 2 12 28 50 [dm3:3L:14935306-14935328:+] 0.7041 143 7 -13.64 -0.4375 MIMAT0012211 dme-miR-2498 39617 CG42247 uucauucugcccUUACGGUCAAa :| ||||||| gccgcccaguacGAGGCCAGUUa 2 12 28 50 [dm3:3L:14935306-14935328:+] 0.7041 143 7 -13.64 -0.4379 MIMAT0000113 dme-miR-8 39617 CG42247 cuguagaaauGGA-CUGUCA-UAAu ||| |||||| ||| ccuccacgauCCUCGACAGUGAUUc 2 14 86 110 [dm3:3L:14935364-14935388:+] 0.7041 120 0 -13.73 -0.1494 MIMAT0000113 dme-miR-8 39617 CG42247 cuguagaaauGGA-CUGUCA-UAAu ||| |||||| ||| ccuccacgauCCUCGACAGUGAUUc 2 14 86 110 [dm3:3L:14935364-14935388:+] 0.7041 120 0 -13.73 -0.1496 MIMAT0000338 dme-miR-277 39617 CG42247 acAGCAUGGUCUAUCACGUAAAu || |:|| || ||||||| ggUCUUGCC--AU-CUGCAUUUg 2 22 393 412 [dm3:3L:14935671-14935690:+] 0.4652 148 7 -16.80 -0.1236 MIMAT0000338 dme-miR-277 39617 CG42247 acAGCAUGGUCUAUCACGUAAAu || |:|| || ||||||| ggUCUUGCC--AU-CUGCAUUUg 2 22 393 412 [dm3:3L:14935671-14935690:+] 0.4652 148 7 -16.80 -0.1238 MIMAT0000342 dme-miR-33 39617 CG42247 guuacgcugauguuACGUGGa |||||| ugauauuagauaauUGCACCu 2 8 232 252 [dm3:3L:14935510-14935530:+] 0.5320 120 6 -13.72 -0.1421 MIMAT0000342 dme-miR-33 39617 CG42247 guuacgcugauguuACGUGGa |||||| ugauauuagauaauUGCACCu 2 8 232 252 [dm3:3L:14935510-14935530:+] 0.5320 120 6 -13.72 -0.1423 MIMAT0000347 dme-miR-283 39617 CG42247 ucuuaauggucGACUAUAAau :||||||| cgaacaaaauaUUGAUAUUag 3 11 220 240 [dm3:3L:14935498-14935518:+] 0.5320 126 0 -5.95 -0.1456 MIMAT0000347 dme-miR-283 39617 CG42247 ucuuaauggucGACUAUAAau :||||||| cgaacaaaauaUUGAUAUUag 3 11 220 240 [dm3:3L:14935498-14935518:+] 0.5320 126 0 -5.95 -0.1458 MIMAT0000389 dme-miR-31b 39617 CG42247 gucGAUAAGGCUGUAGAACGGu | :||:|| :||||||| cuuCCGUUUCG--GUCUUGCCa 2 20 383 402 [dm3:3L:14935661-14935680:+] 0.4652 152 7 -21.42 -0.1956 MIMAT0000389 dme-miR-31b 39617 CG42247 gucGAUAAGGCUGUAGAACGGu | :||:|| :||||||| cuuCCGUUUCG--GUCUUGCCa 2 20 383 402 [dm3:3L:14935661-14935680:+] 0.4652 152 7 -21.42 -0.1959 MIMAT0000400 dme-miR-31a 39617 CG42247 agucGAUACGGCUGUAGAACGGu | :| :|| :||||||| ucuuCCGUUUCG--GUCUUGCCa 2 20 382 402 [dm3:3L:14935660-14935680:+] 0.4652 144 7 -20.22 -0.1993 MIMAT0000400 dme-miR-31a 39617 CG42247 agucGAUACGGCUGUAGAACGGu | :| :|| :||||||| ucuuCCGUUUCG--GUCUUGCCa 2 20 382 402 [dm3:3L:14935660-14935680:+] 0.4652 144 7 -20.22 -0.1996 MIMAT0000401 dme-miR-309 39617 CG42247 auCCUGUUUGAAAUGGG-UCACg |||: ||| |||| |||| acGGAU-AACGAAACCCAAGUGc 2 21 611 632 [dm3:3L:14935889-14935910:+] 0.5729 122 0 -20.96 -0.8442 MIMAT0000401 dme-miR-309 39617 CG42247 auCCUGUUUGAAAUGGG-UCACg |||: ||| |||| |||| acGGAU-AACGAAACCCAAGUGc 2 21 611 632 [dm3:3L:14935889-14935910:+] 0.5729 122 0 -20.96 -0.8447 MIMAT0000406 dme-miR-314 39617 CG42247 ggcuugaauaaccgAGCUUAu |||||| uauauauacauauaUCGAAUg 2 8 651 671 [dm3:3L:14935929-14935949:+] 0.6121 120 6 -8.10 -0.1532 MIMAT0000406 dme-miR-314 39617 CG42247 ggcuugaauaaccgAGCUUAu |||||| uauauauacauauaUCGAAUg 2 8 651 671 [dm3:3L:14935929-14935949:+] 0.6121 120 6 -8.10 -0.1535 MIMAT0005468 dme-miR-193 39617 CG42247 caacccugaAUCAUCCGGUCAu || |||||||| gccgcccagUACGAGGCCAGUu 2 14 28 49 [dm3:3L:14935306-14935327:+] 0.7041 149 7 -15.76 -0.4730 MIMAT0005468 dme-miR-193 39617 CG42247 caacccugaAUCAUCCGGUCAu || |||||||| gccgcccagUACGAGGCCAGUu 2 14 28 49 [dm3:3L:14935306-14935327:+] 0.7041 149 7 -15.76 -0.4735 MIMAT0005472 dme-miR-375 39617 CG42247 auUGAAUUCGGUUUGCUUGUUu ::||:|||| ||||||| uuGUUUGAGCCCCUCGAACAAa 2 21 430 451 [dm3:3L:14935708-14935729:+] 0.4994 164 7 -21.82 -0.5046 MIMAT0005472 dme-miR-375 39617 CG42247 auuGAAUU-CGGUUUGCUUGUUu :||:: ::|:|||||||| guuUUUGGUUUUAGACGAACAAa 2 20 205 227 [dm3:3L:14935483-14935505:+] 0.5405 154 7 -17.00 -1.1498 MIMAT0005472 dme-miR-375 39617 CG42247 auugaaUUCGGUUUGCUUGUUu || :| ||||||| ugucagAACUCUUCCGAACAAa 2 17 531 552 [dm3:3L:14935809-14935830:+] 0.5337 144 7 -13.03 -0.7720 MIMAT0005472 dme-miR-375 39617 CG42247 auUGAAUUCGGUUUGCUUGUUu ::||:|||| ||||||| uuGUUUGAGCCCCUCGAACAAa 2 21 430 451 [dm3:3L:14935708-14935729:+] 0.4994 164 7 -21.82 -0.5051 MIMAT0005472 dme-miR-375 39617 CG42247 auuGAAUU-CGGUUUGCUUGUUu :||:: ::|:|||||||| guuUUUGGUUUUAGACGAACAAa 2 20 205 227 [dm3:3L:14935483-14935505:+] 0.5405 154 7 -17.00 -1.1500 MIMAT0005472 dme-miR-375 39617 CG42247 auugaaUUCGGUUUGCUUGUUu || :| ||||||| ugucagAACUCUUCCGAACAAa 2 17 531 552 [dm3:3L:14935809-14935830:+] 0.5337 144 7 -13.03 -0.7725 MIMAT0005483 dme-miR-1002 39617 CG42247 agcgggaaacauaggugAUGAAUu |||||| ugcacuuccaacauauaUACUUAu 2 8 630 653 [dm3:3L:14935908-14935931:+] 0.5729 120 6 -9.57 -0.1646 MIMAT0005483 dme-miR-1002 39617 CG42247 agcgggaaacauaggugAUGAAUu |||||| ugcacuuccaacauauaUACUUAu 2 8 630 653 [dm3:3L:14935908-14935931:+] 0.5729 120 6 -9.57 -0.1649 MIMAT0005507 dme-miR-137 39617 CG42247 gaUGCACAUAAGAGU-UCGUUau |:||||||| |:| ||||| gaAUGUGUAUUGUUACAGCAAcu 3 21 667 689 [dm3:3L:14935945-14935967:+] 0.6121 128 0 -17.78 -0.2057 MIMAT0005507 dme-miR-137 39617 CG42247 gaUGCACAUAAGAGU-UCGUUau |:||||||| |:| ||||| gaAUGUGUAUUGUUACAGCAAcu 3 21 667 689 [dm3:3L:14935945-14935967:+] 0.6121 128 0 -17.78 -0.2073 MIMAT0005516 dme-miR-252 39617 CG42247 gaggacgccgugaucAUGAAUc |||||| cacuuccaacauauaUACUUAu 2 8 632 653 [dm3:3L:14935910-14935931:+] 0.6121 120 6 -7.39 -0.2033 MIMAT0005516 dme-miR-252 39617 CG42247 gaggacgccgugaucAUGAAUc |||||| cacuuccaacauauaUACUUAu 2 8 632 653 [dm3:3L:14935910-14935931:+] 0.6121 120 6 -7.39 -0.2036 MIMAT0005024 dme-miR-1011 39617 CG42247 gacgcUCGCUAAACUUGG-UUAUu || | ||| ||| |||| auauuAGAUAAUUGCACCUAAUAc 2 19 234 257 [dm3:3L:14935512-14935535:+] 0.4986 122 0 -5.87 -0.7152 MIMAT0005024 dme-miR-1011 39617 CG42247 gacgcUCGCUAAACUUGG-UUAUu || | ||| ||| |||| auauuAGAUAAUUGCACCUAAUAc 2 19 234 257 [dm3:3L:14935512-14935535:+] 0.4986 122 0 -5.87 -0.7156

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score DCX-EMAP RAID00137269 dme-miR-1013-3p miRNA MIMAT0005026 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID00154788 dme-miR-315-5p miRNA MIMAT0000407 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID00208824 dme-miR-137-3p miRNA MIMAT0005507 DCX-EMAP mRNA 39617 Prediction 0.2202 DCX-EMAP RAID00476295 dme-miR-7-5p miRNA MIMAT0000112 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID00525255 dme-miR-971-3p miRNA MIMAT0005487 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID00732137 dme-mir-iab-4 miRNA MI0000432 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID00753599 dme-miR-375-3p miRNA MIMAT0005472 DCX-EMAP mRNA 39617 Prediction 0.2202 DCX-EMAP RAID00864937 dme-miR-1005-3p miRNA MIMAT0005018 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID00880129 dme-miR-1011-3p miRNA MIMAT0005024 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID01451632 dme-miR-985-3p miRNA MIMAT0005502 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID01484154 dme-miR-1002-5p miRNA MIMAT0005483 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID01515284 dme-miR-252-5p miRNA MIMAT0005516 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID01589715 dme-miR-954-5p miRNA MIMAT0005465 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID01789675 dme-miR-316-5p miRNA MIMAT0000408 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID01869920 dme-miR-282-5p miRNA MIMAT0000346 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID02229552 dme-miR-1009-3p miRNA MIMAT0005022 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID02352302 dme-miR-988-3p miRNA MIMAT0005505 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID02466389 dme-miR-8-3p miRNA MIMAT0000113 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID02750605 dme-miR-986-5p miRNA MIMAT0005503 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID02794349 dme-miR-31a-5p miRNA MIMAT0000400 DCX-EMAP mRNA 39617 Prediction 0.2202 DCX-EMAP RAID02895913 dme-miR-314-3p miRNA MIMAT0000406 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID02980843 dme-miR-1-3p miRNA MIMAT0000105 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID03336826 dme-miR-309-3p miRNA MIMAT0000401 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID03357846 dme-miR-33-5p miRNA MIMAT0000342 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID03494128 dme-miR-283-5p miRNA MIMAT0000347 DCX-EMAP mRNA 39617 Prediction 0.2202 DCX-EMAP RAID03574757 dme-miR-976-3p miRNA MIMAT0005492 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID03637717 dme-miR-193-3p miRNA MIMAT0005468 DCX-EMAP mRNA 39617 Prediction 0.2202 DCX-EMAP RAID03684345 dme-miR-31b-5p miRNA MIMAT0000389 DCX-EMAP mRNA 39617 Prediction 0.2202 DCX-EMAP RAID03940969 dme-miR-974-5p miRNA MIMAT0005490 DCX-EMAP mRNA 39617 Prediction 0.1828 DCX-EMAP RAID04032391 dme-miR-277-3p miRNA MIMAT0000338 DCX-EMAP mRNA 39617 Prediction 0.2202