DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36473 CG42319 auaGUAAAG-UAUACGUU----GCAUUUAUGu |||||: | ||| || : ||||||: aaaCAUUUUGAAAUGAAAUUUCUUUAAAUAUa 2 25 140 171 [dm3:2R:9151576-9151607:+] 0.4984 142 0 -8.88 -0.2812 MIMAT0000360 dme-miR-287 36473 CG42319 cacgUUUGCUAAAAG-UUGUGu |||| | ||| ||||| uucgAAACUCUAUUCAAACACg 2 18 205 226 [dm3:2R:9153250-9153271:+] 0.5441 125 0 -10.32 -0.6656 MIMAT0000364 dme-miR-289 36473 CG42319 ucagcgUCCGAGGUGAAUUUAUAAAu || | ::::| |||||||| aacauaAGUCAUUGUUCAAAUAUUUc 2 21 736 761 [dm3:2R:9153781-9153806:+] 0.4425 160 7 -8.68 -0.7626 MIMAT0000364 dme-miR-289 36473 CG42319 ucagcguccgagguGAAUUUAUAAAu :||:||||||| uacuuguacauaauUUUGAAUAUUUc 2 13 332 357 [dm3:2R:9151768-9151793:+] 0.5582 152 7 -8.81 -0.7433 MIMAT0005465 dme-miR-954 36473 CG42319 ugUGUGUUGCGUUGUGGGUCu |||| :| : |||||||| aaACAC-GCUUCACACCCAGc 2 20 220 239 [dm3:2R:9153265-9153284:+] 0.5628 157 7 -22.61 -0.6593 MIMAT0005465 dme-miR-954 36473 CG42319 ugUGUGUUGCGUUGUGGGUCu | | : ||| |||||||| uuAAAAGCCGC-ACACCCAGg 2 20 181 200 [dm3:2R:9153226-9153245:+] 0.5561 153 7 -21.87 -0.4591 MIMAT0005465 dme-miR-954 36473 CG42319 uguguguugcguuGUGGGUCu ||||||| ----ggagccguuCACCCAGc 2 9 1 17 [dm3:2R:9151437-9151453:+] 0.5391 140 7 -16.52 -0.5015 MIMAT0005481 dme-miR-966 36473 CG42319 ggugugucggguguUGGGUGu |||||| caaaaguuuuuauuACCCACc 2 8 85 105 [dm3:2R:9151521-9151541:+] 0.4984 120 6 -12.73 -0.2832 MIMAT0005482 dme-miR-967 36473 CG42319 gcGAAGAGGUCU-CCAUAGAga :| :| :| | ||||||| uuUUAUUAUAUAUGGUAUCUga 3 20 614 635 [dm3:2R:9153659-9153680:+] 0.5188 130 0 -8.10 -0.1745 MIMAT0005488 dme-miR-972 36473 CG42319 cggauuuaUAAGCAUAACAUGu |||: ||||||: guauuugaAUUUAAAUUGUAUu 2 15 639 660 [dm3:2R:9153684-9153705:+] 0.4806 134 0 -8.15 -0.1643 MIMAT0005488 dme-miR-972 36473 CG42319 cgGAUUUA-UAAGCAU-AACAUGu |||| | ||| || |||||| ccCUAACUCUUUCAUACUUGUACa 2 21 318 341 [dm3:2R:9151754-9151777:+] 0.5582 131 6 -14.38 -1.2489 MIMAT0005489 dme-miR-973 36473 CG42319 uuUUAG-CUUC-AAGUUGGUGGUUGGu |:|| ||| ||: |::||| ||| ccAGUCAAAAGUUUUUAUUACCCACCa 2 24 80 106 [dm3:2R:9151516-9151542:+] 0.4984 133 0 -19.08 -0.1248 MIMAT0005499 dme-miR-983 36473 CG42319 aguAAUCAAGCUUUGCAUAAUa | | ||: || :|||||| auuUGAAUUUAAAUUGUAUUAa 2 20 641 662 [dm3:2R:9153686-9153707:+] 0.4806 143 6 -7.60 -0.3599 MIMAT0005502 dme-miR-985 36473 CG42319 acgggCUGGUAAC-CUUGUAAAc | :|| || ||||||| guuuaGUUCAGUGUAAACAUUUu 2 18 126 148 [dm3:2R:9151562-9151584:+] 0.4984 148 7 -7.57 -1.0431 MIMAT0005521 dme-miR-1001 36473 CG42319 acuaggaacccucaAAUGGGu |||||| gucaaaaguuuuuaUUACCCa 2 8 83 103 [dm3:2R:9151519-9151539:+] 0.4984 120 6 -9.71 -0.2103 MIMAT0005022 dme-miR-1009 36473 CG42319 gacUUUACAUUGUUAAAAACUcu |||| |||:||||||||| uauAAAUUUAAUAAUUUUUGAaa 3 21 707 729 [dm3:2R:9153752-9153774:+] 0.4425 168 0 -12.08 -0.2711 MIMAT0005022 dme-miR-1009 36473 CG42319 gacuUUACAUUGUUAAAAACUcu |:||||| | |||||| guucAGUGUAA-ACAUUUUGAaa 3 20 131 152 [dm3:2R:9151567-9151588:+] 0.4984 141 0 -8.73 -0.1411 MIMAT0005022 dme-miR-1009 36473 CG42319 gacuuuACAU-UGUUAAAAACUcu |||| |:|| |||||| cauacuUGUACAUAA-UUUUGAau 3 18 330 352 [dm3:2R:9151766-9151788:+] 0.5582 138 0 -6.31 -0.1229 MIMAT0005026 dme-miR-1013 36473 CG42319 gcUCAAGCCGUAUGAAAAUa ||| ||| ||||||| gaAGU--GGCCAACUUUUAa 2 19 102 119 [dm3:2R:9153147-9153164:+] 0.5681 151 7 -11.75 -0.7600 MIMAT0011786 dme-miR-2280 36473 CG42319 uaUAAAAUAACGGUUCGAUUCu |||| | | ||||||| ucAUUUCA-AGAAUAGCUAAGa 2 21 588 608 [dm3:2R:9153633-9153653:+] 0.5188 146 7 -11.33 -1.1342 MIMAT0011786 dme-miR-2280 36473 CG42319 uauaaAAUAACGGU--UC-GAUUCu || ||||| || ||||| aacagUUCCUGCCAUUAGUCUAAGu 2 18 36 60 [dm3:2R:9153081-9153105:+] 0.5681 120 0 -11.96 -0.6663 MIMAT0011788 dme-miR-2281* 36473 CG42319 aacgUAGACGUCGACGUCUAUUa | :| || : ||||||| uauaAAUUACAAUCUCAGAUAAu 2 20 252 274 [dm3:2R:9151688-9151710:+] 0.4984 147 7 -11.10 -1.1586 MIMAT0012196 dme-miR-2489 36473 CG42319 ugACGUUUAUGUUGUAUGUUAu | :| ||:|| |||||| guUCUAUCUAUAAAUUACAAUc 2 21 244 265 [dm3:2R:9151680-9151701:+] 0.4984 128 6 -5.44 -0.1425 MIMAT0012197 dme-miR-2490 36473 CG42319 aacguUGGAC-GAAAUAGCGAAGu ::||| :|||:||||||: uucguGUCUGUUUUUGUCGCUUUa 2 19 355 378 [dm3:2R:9151791-9151814:+] 0.5452 149 0 -22.24 -0.1438 MIMAT0012198 dme-miR-2491 36473 CG42319 ucGUUGACGUUUCC---GUUGUCGc ||| | || ||| ||||||| ugCAAAUACACAGGCGACAACAGCa 2 21 132 156 [dm3:2R:9153177-9153201:+] 0.5681 159 7 -18.44 -0.7451 MIMAT0012198 dme-miR-2491 36473 CG42319 ucguugacguuuccGUUGUCGc ||||||| ugcacuuauuccucCAACAGCa 2 9 465 486 [dm3:2R:9153510-9153531:+] 0.5188 140 7 -11.36 -0.3588 MIMAT0012202 dme-miR-2494* 36473 CG42319 aagGGUUAGACCACGUGAAUg |||| |||||||| aggCCAACGCAAUGCACUUAu 2 19 453 473 [dm3:2R:9153498-9153518:+] 0.5188 150 7 -15.90 -0.7138 MIMAT0012205 dme-miR-2495* 36473 CG42319 ccGCC-CGUAAAGUUAAU-CCACGGc ||| | | ||:|| | |||||| ugCGGAGAAGGUCGAUGACGGUGCCa 2 23 508 533 [dm3:2R:9153553-9153578:+] 0.5188 129 6 -24.68 -0.9765 MIMAT0012209 dme-miR-2497 36473 CG42319 gacgUUUGUAACAUUUACAAca ||:|||| ||||||| aaugAAGCAUUUCAAAUGUUca 3 19 217 238 [dm3:2R:9151653-9151674:+] 0.4984 150 0 -11.56 -0.1382 MIMAT0012209 dme-miR-2497 36473 CG42319 gaCGUUUGUAACAUUUACAAca |:||| : | | |||||| auGUAAAAGAUAU-AAUGUUua 3 21 110 130 [dm3:2R:9151546-9151566:+] 0.4984 134 0 -7.51 -0.1094 MIMAT0012210 dme-miR-2498* 36473 CG42319 guuUUUAUUCGUAUU----GUCGGAAAu ||| | || | | |||||||| uucAAACACGCUUCACACCCAGCCUUUc 2 22 217 244 [dm3:2R:9153262-9153289:+] 0.5628 152 7 -11.82 -0.2759 MIMAT0012211 dme-miR-2498 36473 CG42319 uucAUUCUGCCCUUACGGUCAaa |:||| ||||||||| cacUGAGA-AAAAAUGCCAGUca 3 21 65 86 [dm3:2R:9151501-9151522:+] 0.4984 138 0 -16.70 -0.2202 MIMAT0012214 dme-miR-2500* 36473 CG42319 ccaUAACA-UAUACACACAAGGAAUg ||| | | ||| |||:||| aacAUUUUGAAAUGAAAUUUCUUUAa 2 23 141 166 [dm3:2R:9151577-9151602:+] 0.4984 137 0 -5.89 -0.1346 MIMAT0012216 dme-miR-2501 36473 CG42319 aaucGGGUCCG--UGAGGUUUGA-AUg ||||||| |:|| ||||| || cacaCCCAGGCAUAUUCGAAACUCUAu 2 21 191 217 [dm3:2R:9153236-9153262:+] 0.5561 139 0 -25.13 -0.6124 MIMAT0000109 dme-miR-4 36473 CG42319 aguuACCAACAGAUCGAAAUa || || | | |||||| ugucUGUUUUUGUCGCUUUAa 2 18 359 379 [dm3:2R:9151795-9151815:+] 0.5452 129 6 -10.07 -0.1758 MIMAT0012531 dme-miR-10-3p 36473 CG42319 uuUGGA-GAGAUCUUGGCUUAAAc |:|| :|: | ::|||||| guAUCUGAAUUGUAUUUGAAUUUa 2 22 628 651 [dm3:2R:9153673-9153696:+] 0.5188 132 6 -12.79 -0.3698 MIMAT0000335 dme-miR-219 36473 CG42319 guucuuaacgcaaaccUGUUAGu |||||| guucuaucuauaaauuACAAUCu 2 8 244 266 [dm3:2R:9151680-9151702:+] 0.4984 120 6 -4.90 -0.1342 MIMAT0000337 dme-miR-276a 36473 CG42319 ucucGUGCCAUACUUCAAGGAu ||:| || ||||||| aaccCAUGUUAAACAGUUCCUg 2 19 25 46 [dm3:2R:9153070-9153091:+] 0.5681 154 7 -15.08 -0.3755 MIMAT0000338 dme-miR-277 36473 CG42319 acagcauggucuaucaCGUAAAu |||||| caagauagagaaugaaGCAUUUc 2 8 207 229 [dm3:2R:9151643-9151665:+] 0.4984 120 6 -8.42 -0.1217 MIMAT0000339 dme-miR-278 36473 CG42319 uuugccugcuuuCAGGGUGGCu | ||||||| ugcauuauuuguGACCCACCGc 2 11 413 434 [dm3:2R:9153458-9153479:+] 0.5393 142 7 -17.31 -0.5771 MIMAT0000339 dme-miR-278 36473 CG42319 uuugccugcuuucaGGGUGGcu |||||| aaaaguuuuuauuaCCCACCaa 3 9 86 107 [dm3:2R:9151522-9151543:+] 0.4984 120 0 -12.28 -0.3871 MIMAT0000350 dme-miR-34 36473 CG42319 guguUGGUCGAUUGGUGUGACGGu :||| || : ||||||| guauGCCAAAAAAAU-CACUGCCa 2 21 281 303 [dm3:2R:9153326-9153348:+] 0.5599 146 7 -18.12 -1.2108 MIMAT0000354 dme-miR-276b 36473 CG42319 ucucGUGCCAUAAUUCAAGGAu ||:| || ||||||| aaccCAUGUUAAACAGUUCCUg 2 19 25 46 [dm3:2R:9153070-9153091:+] 0.5681 154 7 -15.08 -0.3755 MIMAT0000362 dme-miR-263b 36473 CG42319 cacuuaagaggGUCACGGUUc |:||||||| aaggucgaugaCGGUGCCAAa 2 11 515 535 [dm3:2R:9153560-9153580:+] 0.5188 146 7 -15.31 -0.4978 MIMAT0000408 dme-miR-316 36473 CG42319 gcGGUCAUUCG-CCUUUUUCUGu ||| || : | ||||||: acCCACCAAAUAUGUAAAAGAUa 2 21 99 121 [dm3:2R:9151535-9151557:+] 0.4984 131 0 -10.85 -0.2087 MIMAT0005468 dme-miR-193 36473 CG42319 caacccugaaucaucCGGUCAu |||||| gcacugagaaaaaauGCCAGUc 2 8 64 85 [dm3:2R:9151500-9151521:+] 0.4984 120 6 -9.35 -0.1358 MIMAT0005471 dme-miR-958 36473 CG42319 uuucaucuuaucuucUUAGAGu |||||| cuaucuauaaauuacAAUCUCa 2 8 247 268 [dm3:2R:9151683-9151704:+] 0.4984 120 6 -7.17 -0.3287 MIMAT0005479 dme-miR-932 36473 CG42319 gacguuacgugaugcCUUAACu |||||| uuauauaugguaucuGAAUUGu 2 8 619 640 [dm3:2R:9153664-9153685:+] 0.5188 120 6 -6.86 -0.1138 MIMAT0005506 dme-miR-989 36473 CG42319 caaggugaugcAGUGUAGUGu | ||||||| uuaauaaagaaUAACAUCACa 2 11 769 789 [dm3:2R:9153814-9153834:+] 0.4710 142 7 -11.19 -1.2104 MIMAT0005513 dme-miR-994 36473 CG42319 uagugccgaugaUAAAGGAAUc |||||:||| uuuugaaaugaaAUUUCUUUAa 2 11 145 166 [dm3:2R:9151581-9151602:+] 0.4984 134 0 -6.49 -0.1386 MIMAT0005519 dme-miR-999 36473 CG42319 ucugugucagaAUGUCAAUUGu |:::|||||| aauauuauaaaUGUGGUUAACa 2 12 661 682 [dm3:2R:9153706-9153727:+] 0.4425 131 6 -10.89 -0.1227 MIMAT0005019 dme-miR-1006 36473 CG42319 gauACUUAUUCUUUAGCUUAAAu ||||| | | |:|||||| aucUGAAU-UGUAUUUGAAUUUa 2 21 630 651 [dm3:2R:9153675-9153696:+] 0.5188 146 6 -10.66 -0.3757 MIMAT0005027 dme-miR-1014 36473 CG42319 gacgUUUACUUUUACUUAAAa || || | ||||||| ucugAAUUGUAUUUGAAUUUa 2 18 631 651 [dm3:2R:9153676-9153696:+] 0.5188 153 7 -9.45 -1.2966

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG42319 RAID00057808 dme-miR-11-3p miRNA MIMAT0000116 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID00481977 dme-bantam-3p miRNA MIMAT0000365 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID00518004 dme-miR-316-5p miRNA MIMAT0000408 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID00851346 dme-miR-966-5p miRNA MIMAT0005481 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID00935280 dme-miR-972-3p miRNA MIMAT0005488 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID00998311 dme-miR-34-5p miRNA MIMAT0000350 CG42319 mRNA 36473 Prediction 0.2381 CG42319 RAID01019444 dme-miR-1017-3p miRNA MIMAT0005030 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID01036814 dme-miR-958-3p miRNA MIMAT0005471 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID01223976 dme-miR-932-5p miRNA MIMAT0005479 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID01289659 dme-miR-954-5p miRNA MIMAT0005465 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID01379221 dme-miR-277-3p miRNA MIMAT0000338 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID01382361 dme-miR-989-3p miRNA MIMAT0005506 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID01580434 dme-miR-10-3p miRNA MIMAT0012531 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID01831411 dme-miR-278-3p miRNA MIMAT0000339 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID01964048 dme-miR-308-3p miRNA MIMAT0000399 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID02046106 dme-miR-1001-5p miRNA MIMAT0005521 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID02121259 dme-miR-1006-3p miRNA MIMAT0005019 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID02339460 dme-miR-276b-3p miRNA MIMAT0000354 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID02342491 dme-miR-14-3p miRNA MIMAT0000120 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID02425236 dme-miR-1013-3p miRNA MIMAT0005026 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID02486111 dme-miR-263b-5p miRNA MIMAT0000362 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID02680343 dme-miR-991-3p miRNA MIMAT0005509 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID02874531 dme-miR-1014-3p miRNA MIMAT0005027 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID02903671 dme-miR-219-5p miRNA MIMAT0000335 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID03064351 dme-mir-2a-1 miRNA MI0000117 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID03161688 dme-miR-999-3p miRNA MIMAT0005519 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID03441787 dme-miR-1007-3p miRNA MIMAT0005020 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID03448466 dme-miR-33-5p miRNA MIMAT0000342 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID03510121 dme-miR-276a-3p miRNA MIMAT0000337 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID03566427 dme-miR-976-3p miRNA MIMAT0005492 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID03622687 dme-miR-985-3p miRNA MIMAT0005502 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID03639989 dme-miR-4-3p miRNA MIMAT0000109 CG42319 mRNA 36473 Prediction 0.2202 CG42319 RAID03875574 dme-miR-994-5p miRNA MIMAT0005513 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID03999652 dme-miR-193-3p miRNA MIMAT0005468 CG42319 mRNA 36473 Prediction 0.1828 CG42319 RAID04018851 dme-miR-13a-3p miRNA MIMAT0000118 CG42319 mRNA 36473 Prediction 0.1828