DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 40596 CG42574 auAGUAAAGUAU-ACGUUGCAUUUAUGu |||| :| | | |||: ||||||: ugUCAUACUAAAUUUCAAUAUAAAUAUa 2 26 226 253 [dm3:3R:613296-613323:-] 0.5549 152 0 -11.67 -0.3645 MIMAT0000363 dme-miR-288 40596 CG42574 guacUUUACUUUAGCUG-UACUUu :||||||| : || ||||| acguGAAUGAAAAU-ACAAUGAAg 2 20 656 678 [dm3:3R:612871-612893:-] 0.4819 129 0 -16.88 -0.4447 MIMAT0000364 dme-miR-289 40596 CG42574 ucagcguccGAGGUGAAUUUAUAAAu :|| |: ||||||| | auacuaaauUUCAAUAUAAAUAUAUa 2 18 230 255 [dm3:3R:613294-613319:-] 0.5549 129 0 -7.40 -0.1331 MIMAT0000364 dme-miR-289 40596 CG42574 ucagcguccgaggugaauuUAUAAAu |||||| auaaauauauaaguauaauAUAUUUu 2 8 245 270 [dm3:3R:613279-613304:-] 0.5426 120 6 -7.25 -0.2757 MIMAT0005500 dme-miR-984 40596 CG42574 uuuAAGGUUGGCAUAAAU-GGAGu |||| |:: | ||| |||| cuuUUCCCAUUCUUAUUAUCCUCa 2 21 488 511 [dm3:3R:613038-613061:-] 0.4364 124 0 -14.45 -1.0586 MIMAT0005029 dme-miR-1016 40596 CG42574 gaUUCAUACCUCUCUCCACUu ||| || | ||||||| ugAAGCAUUG---GAGGUGAg 2 20 688 705 [dm3:3R:612844-612861:-] 0.3642 147 7 -14.75 -0.1309 MIMAT0011784 dme-miR-2279* 40596 CG42574 uuaAAGUGUGUG-UCUAUAAAuu | :| ::|: | |||||| auaUAUAAGUAUAAUAUAUUUuu 3 20 249 271 [dm3:3R:613278-613300:-] 0.5426 126 0 -3.59 -0.1867 MIMAT0011787 dme-miR-2280* 40596 CG42574 agucaaUCGAACCU-UCAUUUaa | :||| | |||||| uuaaaaAAUUUGAAUAGUAAAca 3 17 362 384 [dm3:3R:613165-613187:-] 0.4939 131 0 -5.74 -0.1185 MIMAT0011791 dme-miR-2283 40596 CG42574 uaacagCAUAAGUACUAUAAAAg ||| | || ||||||| auauaaGUA-UAAU-AUAUUUUu 2 18 251 271 [dm3:3R:613278-613298:-] 0.5426 149 7 -5.21 -1.2348 MIMAT0011791 dme-miR-2283 40596 CG42574 uaacagcauaaguacuAUAAAAg |||||| uucauaaucaaaccauUAUUUUa 2 8 533 555 [dm3:3R:612994-613016:-] 0.4819 120 6 -1.92 -0.2134 MIMAT0012196 dme-miR-2489 40596 CG42574 ugaCGUUUAUGUUGUAUGUUAu |::|||: || ||||||| aacGUGAAUG-AAAAUACAAUg 2 20 655 675 [dm3:3R:612874-612894:-] 0.4819 161 7 -12.43 -0.6123 MIMAT0012196 dme-miR-2489 40596 CG42574 ugacguuUAUGUUGUAUGUUAu :|| |:|||||||| auuauuuGUA-AGCAUACAAUg 2 16 611 631 [dm3:3R:612918-612938:-] 0.4819 153 7 -13.57 -0.2956 MIMAT0012209 dme-miR-2497 40596 CG42574 gacguuuguaacauuUACAACa |||||| aaguuuuuauuuguuAUGUUGa 2 8 558 579 [dm3:3R:612970-612991:-] 0.4819 120 6 -8.97 -0.1063 MIMAT0012215 dme-miR-2500 40596 CG42574 gacUCCAGGUGU-G-UGU-UUUAGg || |::||| | ||| ||||| accAGAUUUACAGCAACACAAAUCg 2 20 47 71 [dm3:3R:613478-613502:-] 0.3785 125 0 -9.68 -0.4523 MIMAT0000110 dme-miR-5 40596 CG42574 guAUAGUGUUGCUAGCAA-GGAAa | ||||| | :||| |||| ccUCUCACACAAAAUGUUACCUUu 2 22 340 363 [dm3:3R:613186-613209:-] 0.4883 125 0 -14.63 -1.0345 MIMAT0000319 dme-miR-263a 40596 CG42574 cacuUAAGAAG-GUCA---CGGUAAUug ||| ||| :| | |||||| ucauAUUAUUCAUAAUCAAACCAUUAuu 3 21 525 552 [dm3:3R:612997-613024:-] 0.4819 126 0 -7.91 -0.1824 MIMAT0000338 dme-miR-277 40596 CG42574 acagCAUGGUCUAUCACGUAAAu | ::| || ||||||| auggGGGUCCUAU-UUGCAUUUu 2 20 134 155 [dm3:3R:613394-613415:-] 0.4824 141 7 -9.22 -0.7344 MIMAT0000347 dme-miR-283 40596 CG42574 ucuuaauggucgacUAUAAAu |||||| uauauaaguauaauAUAUUUu 2 8 250 270 [dm3:3R:613279-613299:-] 0.5426 120 6 -2.47 -0.2733 MIMAT0000355 dme-miR-210 40596 CG42574 aucGGCGACAGUGUGCGUGUu || | :| ||||||| uguCCACCCAUAAACGCACAa 2 19 409 429 [dm3:3R:613120-613140:-] 0.4577 146 7 -15.34 -0.9463 MIMAT0000365 dme-bantam 40596 CG42574 uuagucgaaaguUUUACUAGAgu ||||||||| aacucccaaaauAAAUGAUCUga 3 12 753 775 [dm3:3R:612774-612796:-] 0.4282 135 0 -11.17 -0.3983 MIMAT0000407 dme-miR-315 40596 CG42574 cgaaAGACUCGUUGUUAGUUUu | | | : |:||||||| cucaUAUUAUUCAUAAUCAAAc 2 19 524 545 [dm3:3R:613004-613025:-] 0.4819 150 7 -6.78 -1.0297 MIMAT0000408 dme-miR-316 40596 CG42574 gcGGUCAUUCGCCUUUUUCUGu | | || | ||||||| auCGAUUAUUCAAUAAAAGACc 2 21 384 405 [dm3:3R:613144-613165:-] 0.4771 144 7 -9.86 -0.8832 MIMAT0005476 dme-miR-962 40596 CG42574 cuGUCGUAGUUAAAGAGAUGGAAua || || ||| | | |||||| cuCA-CA-CAAAAUGU-UACCUUua 3 24 343 364 [dm3:3R:613185-613206:-] 0.4883 129 0 -10.80 -0.1701 MIMAT0005477 dme-miR-963 40596 CG42574 cuuuguUGGACUAUA-AAUGGAAca || | || ||||||| ccucucACACAAAAUGUUACCUUua 3 19 340 364 [dm3:3R:613185-613209:-] 0.4883 129 0 -9.46 -0.1883 MIMAT0005480 dme-miR-965 40596 CG42574 uuccccuuuucgauaUGCGAAu |||||| auacaaugugcauaaACGCUUa 2 8 624 645 [dm3:3R:612904-612925:-] 0.4819 120 6 -10.45 -0.1219 MIMAT0005501 dme-miR-927 40596 CG42574 ccAUUUCGCAUCCUUAAGAUUu | |||| | |||||||| ccUCAAGC--A--AAUUCUAAc 2 21 507 524 [dm3:3R:613025-613042:-] 0.4485 146 7 -6.76 -0.8558 MIMAT0005501 dme-miR-927 40596 CG42574 ccaUUUCGCAUCCUUAAG-AUUu :|| | | |||||| ||| augGAAAAGAAAGAAUUCAUAAu 2 20 719 741 [dm3:3R:612808-612830:-] 0.3962 123 0 -9.90 -0.6555

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ctrip RAID00095881 dme-miR-995-3p miRNA MIMAT0005514 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID00278492 dme-miR-285-3p miRNA MIMAT0000356 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID00442964 dme-miR-305-5p miRNA MIMAT0000391 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID00569506 dme-miR-315-5p miRNA MIMAT0000407 ctrip mRNA 40596 Prediction 0.2202 ctrip RAID00638513 dme-miR-963-5p miRNA MIMAT0005477 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID00867767 dme-miR-965-3p miRNA MIMAT0005480 ctrip mRNA 40596 Prediction 0.2202 ctrip RAID01354576 dme-miR-997-5p miRNA MIMAT0005517 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID01721367 dme-miR-4-3p miRNA MIMAT0000109 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID01815773 dme-miR-927-5p miRNA MIMAT0005501 ctrip mRNA 40596 Prediction 0.2202 ctrip RAID01861536 dme-miR-1016-3p miRNA MIMAT0005029 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID01989635 dme-miR-277-3p miRNA MIMAT0000338 ctrip mRNA 40596 Prediction 0.2202 ctrip RAID02054621 dme-miR-994-5p miRNA MIMAT0005513 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID02085475 dme-miR-960-5p miRNA MIMAT0005474 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID02494303 dme-miR-962-5p miRNA MIMAT0005476 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID02551352 dme-miR-969-5p miRNA MIMAT0005485 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID02797025 dme-miR-316-5p miRNA MIMAT0000408 ctrip mRNA 40596 Prediction 0.2202 ctrip RAID02919450 dme-miR-964-5p miRNA MIMAT0005478 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03207527 dme-miR-263a-5p miRNA MIMAT0000319 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03211378 dme-miR-932-5p miRNA MIMAT0005479 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03282855 dme-miR-5-5p miRNA MIMAT0000110 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03352369 dme-miR-375-3p miRNA MIMAT0005472 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03472107 dme-miR-998-3p miRNA MIMAT0005518 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03493657 dme-miR-210-3p miRNA MIMAT0000355 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03510421 dme-let-7-5p miRNA MIMAT0000396 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03754322 dme-miR-283-5p miRNA MIMAT0000347 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03818747 dme-miR-974-5p miRNA MIMAT0005490 ctrip mRNA 40596 Prediction 0.1828 ctrip RAID03866271 dme-bantam-3p miRNA MIMAT0000365 ctrip mRNA 40596 Prediction 0.1828