DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37575 dnr1 auaguaaAGUAUACGU-UGCAUUUAUGu | |||| :| |: || |||| auauaccUAAUAUAUAUAUAUAUAUACa 2 21 341 368 [dm3:2R:18451257-18451284:-] 0.4645 127 0 -6.20 -0.1324 MIMAT0000364 dme-miR-289 37575 dnr1 ucagcguccgaggugaauuUAUAAAu |||||| uauauauauauauauacauAUAUUUa 2 8 351 376 [dm3:2R:18451249-18451274:-] 0.4645 120 6 -7.91 -0.1419 MIMAT0000388 dme-miR-303 37575 dnr1 ugGUCAAAGGACACU----UUGGAUUu :||| :|| ||| ||||||| acUAGUGCUCUAUGACCACAACCUAAa 2 22 76 102 [dm3:2R:18451523-18451549:-] 0.6062 152 7 -20.50 -0.6198 MIMAT0000388 dme-miR-303 37575 dnr1 uggucaaaggacacuuUGGAUUu |||||| cacgauauauauauauACCUAAu 2 8 329 351 [dm3:2R:18451274-18451296:-] 0.4645 120 6 -8.73 -0.1924 MIMAT0005489 dme-miR-973 37575 dnr1 uuUUAGCUUCAA--GUU--GGUGGUUGGu | | | ||| ||| ::||||||: uuACUAAAUGUUAGCAAUUUUACCAACUa 2 24 582 610 [dm3:2R:18451015-18451043:-] 0.5622 133 0 -14.88 -0.2790 MIMAT0005509 dme-miR-991 37575 dnr1 ugaaagguUUGAUGUUGAAAUu ||||: ||||||| acauaagcAACUGAAACUUUAa 2 15 264 285 [dm3:2R:18451340-18451361:-] 0.5393 158 7 -11.89 -1.0216 MIMAT0005521 dme-miR-1001 37575 dnr1 acUAGGAACCCUCAAAUGGgu || :| | | |||||| aaAUGUUAGCAAUUUUACCaa 3 20 587 607 [dm3:2R:18451018-18451038:-] 0.5622 131 0 -7.06 -0.2153 MIMAT0011784 dme-miR-2279* 37575 dnr1 uuaAAGUGUGUGUCUAUAAAUu | :|:|:||| ||||||| auaUAUAUAUACAUAUAUUUAc 2 20 356 377 [dm3:2R:18451248-18451269:-] 0.4645 167 7 -11.93 -1.0620 MIMAT0011784 dme-miR-2279* 37575 dnr1 uuaAAGUGUGUGUCUAUAAAUu | ||||:| | ||||||| guaUACACAUAGAUAUAUUUAc 2 20 500 521 [dm3:2R:18451104-18451125:-] 0.5465 167 7 -16.75 -0.7701 MIMAT0011791 dme-miR-2283 37575 dnr1 uaacagcAUAAGUACUAUAAAag ||| ||| |||||| auauauaUAUACAU-AUAUUUac 3 17 356 377 [dm3:2R:18451248-18451269:-] 0.4645 138 0 -4.50 -0.1213 MIMAT0012195 dme-miR-307-as 37575 dnr1 cuGAGUGAGUUGGACCCACACu || |: || |||||||| ggCUGAUGGAA--UGGGUGUGc 2 21 26 45 [dm3:2R:18451580-18451599:-] 0.6589 149 7 -19.74 -0.6862 MIMAT0012196 dme-miR-2489 37575 dnr1 ugACGUUUAUGU-UGUAUGU-UAu | :| |||:| |:||||| || aaUAUAUAUAUAUAUAUACAUAUa 2 21 349 372 [dm3:2R:18451253-18451276:-] 0.4645 127 0 -8.67 -1.2611 MIMAT0012196 dme-miR-2489 37575 dnr1 ugacguuUAUGUUGUAUGU-UAu |||| ::||||| || acacuguAUACUGUAUACACAUa 2 16 488 510 [dm3:2R:18451115-18451137:-] 0.5465 123 0 -13.25 -1.1388 MIMAT0012201 dme-miR-2493 37575 dnr1 ugCGGAGCGU--GUUUAUGUGUGcc |::|| :| || |||||||| uuGUUUCAUAUUCAUAUACACACug 3 22 469 493 [dm3:2R:18451132-18451156:-] 0.5465 144 0 -19.51 -0.1351 MIMAT0012204 dme-miR-2495 37575 dnr1 ucagucggguuaacUUCACGGu ||||||: uacgaacuucgagaAAGUGCUa 2 9 390 411 [dm3:2R:18451214-18451235:-] 0.5465 124 0 -14.59 -0.1150 MIMAT0000338 dme-miR-277 37575 dnr1 acagcAUGGUCUAUCACG-UAAAu | | ||| ||||| |||| cgaacUUCGAGAAAGUGCUAUUUa 2 19 392 415 [dm3:2R:18451210-18451233:-] 0.5465 130 0 -14.33 -0.9590 MIMAT0000347 dme-miR-283 37575 dnr1 ucuuaauggucgacUAUAAAu |||||| auauauauauacauAUAUUUa 2 8 356 376 [dm3:2R:18451249-18451269:-] 0.4645 120 6 -3.67 -0.1433 MIMAT0000390 dme-miR-304 37575 dnr1 gagugUAAAUGUUUAAC-UCUAAu || ||: || || ||||| cuagaAUCUAU-AACUGCAGAUUg 2 19 449 471 [dm3:2R:18451154-18451176:-] 0.5465 120 0 -10.12 -1.0609 MIMAT0000391 dme-miR-305 37575 dnr1 gucUCGUGGACUACUUCAUGUUa ||| |:||| | |||||| uguAGCCCUUGA--AUGUACAAc 2 21 553 573 [dm3:2R:18451052-18451072:-] 0.5544 133 6 -15.62 -0.1116 MIMAT0000398 dme-miR-307 37575 dnr1 gagugaguuccuCCAACACu ||||||| --------aauuGGUUGUGc 2 9 1 12 [dm3:2R:18451613-18451624:-] 0.6589 140 7 -9.97 -0.6853 MIMAT0000409 dme-miR-317 37575 dnr1 ugACCUAUGGUGGUCGAC-ACAAGu ||| |: ::|: |||| ||||| auUGGUUG-UGCUCGCUGCUGUUCc 2 23 2 25 [dm3:2R:18451600-18451623:-] 0.6589 128 0 -17.69 -0.3004 MIMAT0000413 dme-miR-iab-4-3p 37575 dnr1 caaUGCAUAUGACUUCCAUAUGGc ||| ||| | | |||||| uacACG-AUA-UAUAUAUAUACCu 2 22 327 348 [dm3:2R:18451277-18451298:-] 0.4645 121 6 -9.15 -0.1452 MIMAT0005463 dme-miR-iab-4as-5p 37575 dnr1 gccAUAUGGAAGUCAUAUG-CAUu ||||| | |||||| ||| ucaUAUACACACUGUAUACUGUAu 2 21 480 503 [dm3:2R:18451122-18451145:-] 0.5465 132 0 -13.64 -0.9010 MIMAT0005466 dme-miR-955 37575 dnr1 cugugaguUUGG-AGACGUGCUAc |:|| | | |||||| uacagaguAGCCAUAUACACGAUa 2 16 312 335 [dm3:2R:18451290-18451313:-] 0.4645 122 6 -12.30 -0.2202 MIMAT0005467 dme-miR-190 37575 dnr1 guugguucuUAUA-GUUUGUAUAga |||| :| |||||| aauauauauAUAUAUAUACAUAUau 3 16 349 373 [dm3:2R:18451252-18451276:-] 0.4645 134 0 -6.43 -0.1313 MIMAT0005476 dme-miR-962 37575 dnr1 cuGUCGUAGUUA-AAGAGAUGGAAUa |: :|| :|| | ||||||| auCGUUAUAGAUCAGCGAUACCUUAu 2 24 523 548 [dm3:2R:18451077-18451102:-] 0.5465 146 7 -16.72 -0.7061 MIMAT0005478 dme-miR-964 37575 dnr1 uucAAUUCGAGGGGAUAAGAUu || | ||| ||||||| aucUUUA-CUCAAGUAUUCUAg 2 20 241 261 [dm3:2R:18451364-18451384:-] 0.6142 149 7 -12.05 -0.5241 MIMAT0005490 dme-miR-974 37575 dnr1 uuaugaUGAAGAA-ACGAGCGAa |:| || |||||||| -----aAUUGGUUGUGCUCGCUg 2 17 1 18 [dm3:2R:18451607-18451624:-] 0.6589 151 7 -16.58 -0.7908 MIMAT0005503 dme-miR-986 37575 dnr1 agucaguguugcgauAAGCUCu |||||| uauagauguacgaacUUCGAGa 2 8 382 403 [dm3:2R:18451222-18451243:-] 0.5055 120 6 -16.19 -0.1284 MIMAT0005024 dme-miR-1011 37575 dnr1 gaCGCUCGCUAAACUUGGUU-AUu |: ||| |||| ||||| || auGUUAGCAAUUU-UACCAACUAa 2 22 589 611 [dm3:2R:18451014-18451036:-] 0.5622 127 0 -12.33 -1.2760

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dnr1 RAID00474524 dme-miR-277-3p miRNA MIMAT0000338 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID00493129 dme-miR-964-5p miRNA MIMAT0005478 dnr1 mRNA 37575 Prediction 0.2202 dnr1 RAID01026772 dme-miR-307a-3p miRNA MIMAT0000398 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID01056082 dme-miR-986-5p miRNA MIMAT0005503 dnr1 mRNA 37575 Prediction 0.2202 dnr1 RAID01117323 dme-miR-955-5p miRNA MIMAT0005466 dnr1 mRNA 37575 Prediction 0.2202 dnr1 RAID01313328 dme-miR-190-5p miRNA MIMAT0005467 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID02177975 dme-miR-962-5p miRNA MIMAT0005476 dnr1 mRNA 37575 Prediction 0.2202 dnr1 RAID02200280 dme-miR-991-3p miRNA MIMAT0005509 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID02576033 dme-miR-1011-3p miRNA MIMAT0005024 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID02748833 dme-miR-283-5p miRNA MIMAT0000347 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID02784088 dme-miR-iab-8-5p miRNA MIMAT0005463 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID02848903 dme-mir-307a miRNA MI0000418 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID03164295 dme-miR-317-3p miRNA MIMAT0000409 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID03170405 dme-miR-305-5p miRNA MIMAT0000391 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID03190255 dme-mir-iab-4 miRNA MI0000432 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID03675123 dme-miR-iab-4-3p miRNA MIMAT0000413 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID03798220 dme-miR-375-3p miRNA MIMAT0005472 dnr1 mRNA 37575 Prediction 0.1828 dnr1 RAID03912710 dme-miR-974-5p miRNA MIMAT0005490 dnr1 mRNA 37575 Prediction 0.2381 dnr1 RAID04032252 dme-miR-304-5p miRNA MIMAT0000390 dnr1 mRNA 37575 Prediction 0.1828