DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36040 TER94 auaguaaaGUAUACGUUGC-AUUUAUGu :| || :|| | ||||||| uacacacaUACAUUUAAAGAUAAAUACa 2 20 382 409 [dm3:2R:5880964-5880991:+] 0.7559 154 7 -10.98 -1.3471 MIMAT0000343 dme-miR-280 36040 TER94 auaguaaaGUAUACGUUGC-AUUUAUGu :| || :|| | ||||||| uacacacaUACAUUUAAAGAUAAAUACa 2 20 382 409 [dm3:2R:5880964-5880991:+] 0.7559 154 7 -10.98 -1.3470 MIMAT0000360 dme-miR-287 36040 TER94 cacgUUUGCUA--AAAGUUGUgu |||: || ||||||| auaaAAAUUAUAAAUUCAACAaa 3 18 463 485 [dm3:2R:5881045-5881067:+] 0.5271 132 0 -6.98 -0.7666 MIMAT0000360 dme-miR-287 36040 TER94 cacguuugcUAAAAGUUGUGu || || ||||| uaaauacauAUAUUAAACACc 2 13 402 422 [dm3:2R:5880984-5881004:+] 0.7559 120 0 -4.67 -0.1446 MIMAT0000360 dme-miR-287 36040 TER94 cacgUUUGCUA--AAAGUUGUgu |||: || ||||||| auaaAAAUUAUAAAUUCAACAaa 3 18 463 485 [dm3:2R:5881045-5881067:+] 0.5271 132 0 -6.98 -0.3797 MIMAT0000360 dme-miR-287 36040 TER94 cacguuugcUAAAAGUUGUGu || || ||||| uaaauacauAUAUUAAACACc 2 13 402 422 [dm3:2R:5880984-5881004:+] 0.7559 120 0 -4.67 -0.1449 MIMAT0000388 dme-miR-303 36040 TER94 uggUCAAAGGACACUUUGGAUUu ||||| || | |||| ||| augAGUUU-CUAU-AAACAUAAu 2 21 346 366 [dm3:2R:5880928-5880948:+] 0.7075 132 0 -7.96 -0.1003 MIMAT0000388 dme-miR-303 36040 TER94 uggUCAAAGGACACUUUGGAUUu ||||| || | |||| ||| augAGUUU-CUAU-AAACAUAAu 2 21 346 366 [dm3:2R:5880928-5880948:+] 0.7075 132 0 -7.96 -0.1000 MIMAT0005473 dme-miR-959 36040 TER94 aaguauuauggGGGCUACUGUu :| ||||||| cgauggcgaaaUCAGAUGACAu 2 12 147 168 [dm3:2R:5880729-5880750:+] 0.5329 143 7 -13.15 -0.8432 MIMAT0005473 dme-miR-959 36040 TER94 aaguauuauggGGGCUACUGUu :| ||||||| cgauggcgaaaUCAGAUGACAu 2 12 147 168 [dm3:2R:5880729-5880750:+] 0.5329 143 7 -13.15 -0.8424 MIMAT0005481 dme-miR-966 36040 TER94 ggUGUGUCG-GGUG-UUGGGUGu |||| || || || |||| uuACACCGCAAAACAAAACCACa 2 20 11 33 [dm3:2R:5880593-5880615:+] 0.5332 121 0 -19.83 -0.1432 MIMAT0005481 dme-miR-966 36040 TER94 ggUGUGUCG-GGUG-UUGGGUGu |||| || || || |||| uuACACCGCAAAACAAAACCACa 2 20 11 33 [dm3:2R:5880593-5880615:+] 0.5332 121 0 -19.83 -0.1257 MIMAT0005502 dme-miR-985 36040 TER94 acgggcugguaaccuUGUAAAc |||||| uacacauacacacauACAUUUa 2 8 376 397 [dm3:2R:5880958-5880979:+] 0.7559 120 6 -4.37 -0.6882 MIMAT0005502 dme-miR-985 36040 TER94 acgggcugguaaccuUGUAAAc |||||| aguguauuuggagcuACAUUUu 2 8 434 455 [dm3:2R:5881016-5881037:+] 0.7559 120 6 -9.05 -0.2682 MIMAT0005502 dme-miR-985 36040 TER94 acgggcugguaaccuUGUAAAc |||||| uacacauacacacauACAUUUa 2 8 376 397 [dm3:2R:5880958-5880979:+] 0.7559 120 6 -4.37 -0.6872 MIMAT0005502 dme-miR-985 36040 TER94 acgggcugguaaccuUGUAAAc |||||| aguguauuuggagcuACAUUUu 2 8 434 455 [dm3:2R:5881016-5881037:+] 0.7559 120 6 -9.05 -0.2714 MIMAT0005022 dme-miR-1009 36040 TER94 gacUUUACAUUGUUA-AAAACUCu || | ||| :| ||| ||| uaaAAUUAUAAGUGUAUUUGGAGc 2 21 424 447 [dm3:2R:5881006-5881029:+] 0.7559 123 0 -7.01 -0.1073 MIMAT0005022 dme-miR-1009 36040 TER94 gacUUUACAUUGUUA-AAAACUCu || | ||| :| ||| ||| uaaAAUUAUAAGUGUAUUUGGAGc 2 21 424 447 [dm3:2R:5881006-5881029:+] 0.7559 123 0 -7.01 -0.1063 MIMAT0005026 dme-miR-1013 36040 TER94 gcucaagccGUAUGAAAAUa ||||| |||| acauacacaCAUACAUUUAa 2 12 379 398 [dm3:2R:5880961-5880980:+] 0.7559 123 0 -6.74 -0.2704 MIMAT0005026 dme-miR-1013 36040 TER94 gcucaagccguaUGAAAAua |||||| ccacaaaauggaACUUUUua 3 9 29 48 [dm3:2R:5880611-5880630:+] 0.5332 120 0 -7.60 -0.1444 MIMAT0005026 dme-miR-1013 36040 TER94 gcucaagccGUAUGAAAAUa ||||| |||| acauacacaCAUACAUUUAa 2 12 379 398 [dm3:2R:5880961-5880980:+] 0.7559 123 0 -6.74 -0.2697 MIMAT0005026 dme-miR-1013 36040 TER94 gcucaagccguaUGAAAAua |||||| ccacaaaauggaACUUUUua 3 9 29 48 [dm3:2R:5880611-5880630:+] 0.5332 120 0 -7.60 -0.1440 MIMAT0011784 dme-miR-2279* 36040 TER94 uuaaaGUGUGUGUCUAUAAAUu :||||||| | ||||| acacaUACACACAUACAUUUAa 2 18 377 398 [dm3:2R:5880959-5880980:+] 0.7559 141 0 -13.92 -0.1940 MIMAT0011784 dme-miR-2279* 36040 TER94 uuaaaGUGUGUGUCUAUAAAUu :| |:||| ||||| | aaagaUAAAUACAUAUAUUAAa 2 18 397 418 [dm3:2R:5880979-5881000:+] 0.7559 129 0 -6.64 -0.1530 MIMAT0011784 dme-miR-2279* 36040 TER94 uuaaaGUGUGUGUCUAUAAAUu :||||||| | ||||| acacaUACACACAUACAUUUAa 2 18 377 398 [dm3:2R:5880959-5880980:+] 0.7559 141 0 -13.92 -0.1935 MIMAT0011784 dme-miR-2279* 36040 TER94 uuaaaGUGUGUGUCUAUAAAUu :| |:||| ||||| | aaagaUAAAUACAUAUAUUAAa 2 18 397 418 [dm3:2R:5880979-5881000:+] 0.7559 129 0 -6.64 -0.1543 MIMAT0011787 dme-miR-2280* 36040 TER94 agUCAAU-CGAACCUUCAUUUAa || || :|| ||||:||| ggAGCUACAUUUUUAAGUGAAUa 2 21 443 465 [dm3:2R:5881025-5881047:+] 0.7559 139 0 -7.15 -0.3749 MIMAT0011787 dme-miR-2280* 36040 TER94 agUCAAU-CGAACCUUCAUUUAa || || :|| ||||:||| ggAGCUACAUUUUUAAGUGAAUa 2 21 443 465 [dm3:2R:5881025-5881047:+] 0.7559 139 0 -7.15 -0.3783 MIMAT0011788 dme-miR-2281* 36040 TER94 aacGUAGACGUCGACGUCUAUUa || | || :| |||||| acaCACAUACAUUUAAAGAUAAa 2 21 383 405 [dm3:2R:5880965-5880987:+] 0.7559 124 6 -9.31 -0.8395 MIMAT0011788 dme-miR-2281* 36040 TER94 aacGUAGACGUCGACGUCUAUUa || | || :| |||||| acaCACAUACAUUUAAAGAUAAa 2 21 383 405 [dm3:2R:5880965-5880987:+] 0.7559 124 6 -9.31 -0.8385 MIMAT0012194 dme-miR-307-as* 36040 TER94 gguagUGUUGGAGGAACUCACu :| || |::|| |||| uuggaGCUACAUUUUUAAGUGa 2 18 441 462 [dm3:2R:5881023-5881044:+] 0.7559 125 0 -9.37 -0.4339 MIMAT0012194 dme-miR-307-as* 36040 TER94 gguagUGUUGGAGGAACUCACu :| || |::|| |||| uuggaGCUACAUUUUUAAGUGa 2 18 441 462 [dm3:2R:5881023-5881044:+] 0.7559 125 0 -9.37 -0.4184 MIMAT0012196 dme-miR-2489 36040 TER94 ugACGUUUAUGU-UGUAUGUUAu | || ||||| ||||||| | gaUACACAUACACACAUACAUUu 2 21 374 396 [dm3:2R:5880956-5880978:+] 0.7559 143 0 -13.86 -0.1398 MIMAT0012196 dme-miR-2489 36040 TER94 ugACGUUUAUGUUGUAUGU-UAu | :||| |:|| ||||| || caUUUAAAGAUAA-AUACAUAUa 2 21 392 413 [dm3:2R:5880974-5880995:+] 0.7559 126 0 -8.11 -1.3502 MIMAT0012196 dme-miR-2489 36040 TER94 ugACGUUUAUGU-UGUAUGUUAu | || ||||| ||||||| | gaUACACAUACACACAUACAUUu 2 21 374 396 [dm3:2R:5880956-5880978:+] 0.7559 143 0 -13.86 -0.1394 MIMAT0012196 dme-miR-2489 36040 TER94 ugACGUUUAUGUUGUAUGU-UAu | :||| |:|| ||||| || caUUUAAAGAUAA-AUACAUAUa 2 21 392 413 [dm3:2R:5880974-5880995:+] 0.7559 126 0 -8.11 -1.3502 MIMAT0012199 dme-miR-2492 36040 TER94 aaacuuUCGAGA---GCUGUUUUGUa ||:|:| | :||||||| auuucuAGUUUUACACCGCAAAACAa 2 18 1 26 [dm3:2R:5880583-5880608:+] 0.6728 148 7 -11.19 -1.3008 MIMAT0012199 dme-miR-2492 36040 TER94 aaacuuUCGAGA---GCUGUUUUGUa ||:|:| | :||||||| auuucuAGUUUUACACCGCAAAACAa 2 18 1 26 [dm3:2R:5880583-5880608:+] 0.6728 148 7 -11.19 -1.2803 MIMAT0012201 dme-miR-2493 36040 TER94 ugcggaGC-GUGUUUAUGUGUGcc || :||| |||||||| uauuaaCGAUACACAUACACACau 3 18 367 390 [dm3:2R:5880949-5880972:+] 0.7559 144 0 -17.24 -0.4591 MIMAT0012201 dme-miR-2493 36040 TER94 ugcggaGC-GUGUUUAUGUGUGcc || :||| |||||||| uauuaaCGAUACACAUACACACau 3 18 367 390 [dm3:2R:5880949-5880972:+] 0.7559 144 0 -17.24 -0.4582 MIMAT0012215 dme-miR-2500 36040 TER94 gacuccagguGUGUGUUUUAGg || |||||||| auuauaaauuCA-ACAAAAUCa 2 13 469 489 [dm3:2R:5881051-5881071:+] 0.5271 146 7 -9.82 -1.3456 MIMAT0012216 dme-miR-2501 36040 TER94 aaucgggUCCGUGAGGUUUGAAUg || : || :|||| || auauaugAGUUUCUAUAAACAUAa 2 18 342 365 [dm3:2R:5880924-5880947:+] 0.7075 121 0 -9.83 -0.1015 MIMAT0012216 dme-miR-2501 36040 TER94 aaucgggUCCGUGAGGUUUGAAUg || : || :|||| || auauaugAGUUUCUAUAAACAUAa 2 18 342 365 [dm3:2R:5880924-5880947:+] 0.7075 121 0 -9.83 -0.1013 MIMAT0012531 dme-miR-10-3p 36040 TER94 uuUGGAGAGAUCUUGGCUUAAAc | ||:|:|| || :|||||| ggAACUUUUUA-AA-UGAAUUUu 2 22 38 58 [dm3:2R:5880620-5880640:+] 0.5332 145 6 -10.89 -0.1063 MIMAT0012531 dme-miR-10-3p 36040 TER94 uuUGGAGAGAUCUUGGCUUAAAc | ||:|:|| || :|||||| ggAACUUUUUA-AA-UGAAUUUu 2 22 38 58 [dm3:2R:5880620-5880640:+] 0.5332 145 6 -10.89 -0.1060 MIMAT0000332 dme-miR-274 36040 TER94 uaaugggcaaucacagccaGUGUUUu |||||| uuacaccgcaaaacaaaacCACAAAa 2 8 11 36 [dm3:2R:5880593-5880618:+] 0.5332 120 6 -13.53 -0.2576 MIMAT0000332 dme-miR-274 36040 TER94 uaaugggcaaucacagccaGUGUUUu |||||| uuacaccgcaaaacaaaacCACAAAa 2 8 11 36 [dm3:2R:5880593-5880618:+] 0.5332 120 6 -13.53 -0.2570 MIMAT0000407 dme-miR-315 36040 TER94 cgAAAGACUCGUUGUUAGUUUu |||:| ||:: ||| ||| caUUUUUAAGUG--AAUAAAAa 2 21 450 469 [dm3:2R:5881032-5881051:+] 0.7559 125 0 -4.49 -0.2248 MIMAT0000407 dme-miR-315 36040 TER94 cgAAAGACUCGUUGUUAGUUUu |||:| ||:: ||| ||| caUUUUUAAGUG--AAUAAAAa 2 21 450 469 [dm3:2R:5881032-5881051:+] 0.7559 125 0 -4.49 -0.2180 MIMAT0005467 dme-miR-190 36040 TER94 guuGGUUCUUAUAGUUUGUAUAga ::|| :||| | |||||| cauUUAAAGAUA-AAUACAUAUau 3 22 392 414 [dm3:2R:5880974-5880996:+] 0.7559 135 0 -6.76 -0.5381 MIMAT0005467 dme-miR-190 36040 TER94 guuGGUUCUUAUAGUUUGUAUAga ::|| :||| | |||||| cauUUAAAGAUA-AAUACAUAUau 3 22 392 414 [dm3:2R:5880974-5880996:+] 0.7559 135 0 -6.76 -0.5406 MIMAT0005485 dme-miR-969 36040 TER94 uuuugaacgaaUCACCUUGAg | ||||||| caaaaccacaaAAUGGAACUu 2 11 24 44 [dm3:2R:5880606-5880626:+] 0.5332 142 7 -11.13 -1.1988 MIMAT0005485 dme-miR-969 36040 TER94 uuuugaaCGAAU-CACCUUGAg |: || ||||:|| auuauaaGUGUAUUUGGAGCUa 2 15 428 449 [dm3:2R:5881010-5881031:+] 0.7559 125 0 -9.35 -0.1560 MIMAT0005485 dme-miR-969 36040 TER94 uuuugaacgaaUCACCUUGAg | ||||||| caaaaccacaaAAUGGAACUu 2 11 24 44 [dm3:2R:5880606-5880626:+] 0.5332 142 7 -11.13 -1.1984 MIMAT0005485 dme-miR-969 36040 TER94 uuuugaaCGAAU-CACCUUGAg |: || ||||:|| auuauaaGUGUAUUUGGAGCUa 2 15 428 449 [dm3:2R:5881010-5881031:+] 0.7559 125 0 -9.35 -0.1515 MIMAT0005487 dme-miR-971 36040 TER94 agugacauucuucaUUGUGGUu ||||||: aaauacauauauuaAACACCGu 2 9 403 424 [dm3:2R:5880985-5881006:+] 0.7559 124 0 -9.53 -0.7501 MIMAT0005487 dme-miR-971 36040 TER94 agugacauucuucaUUGUGGUu ||||||: aaauacauauauuaAACACCGu 2 9 403 424 [dm3:2R:5880985-5881006:+] 0.7559 124 0 -9.53 -0.7514 MIMAT0005501 dme-miR-927 36040 TER94 ccAUUUCGC--AUCCUUAAGAUUu | |||:| || |||| ||| uuUUAAGUGAAUAAAAAUUAUAAa 2 21 453 476 [dm3:2R:5881035-5881058:+] 0.7559 127 0 -4.78 -0.4183 MIMAT0005501 dme-miR-927 36040 TER94 ccAUUUCGC--AUCCUUAAGAUUu | |||:| || |||| ||| uuUUAAGUGAAUAAAAAUUAUAAa 2 21 453 476 [dm3:2R:5881035-5881058:+] 0.7559 127 0 -4.78 -0.3903 MIMAT0005516 dme-miR-252 36040 TER94 gaGGACGCCGUGAUCA-UGAAUc |||| | |:| :|| ||||| auCCUG-GACGC-GGUAACUUAc 2 21 97 117 [dm3:2R:5880679-5880699:+] 0.5375 120 0 -16.81 -0.2002 MIMAT0005516 dme-miR-252 36040 TER94 gaGGACGCCGUGAUCA-UGAAUc |||| | |:| :|| ||||| auCCUG-GACGC-GGUAACUUAc 2 21 97 117 [dm3:2R:5880679-5880699:+] 0.5375 120 0 -16.81 -0.1998 MIMAT0005019 dme-miR-1006 36040 TER94 gaUACUU--AUUCUUUAGCUUAAAu |||:| | || :|||||| aaAUGGAACUUUUUAAAUGAAUUUu 2 22 34 58 [dm3:2R:5880616-5880640:+] 0.5332 132 6 -7.18 -0.1160 MIMAT0005019 dme-miR-1006 36040 TER94 gaUACUU--AUUCUUUAGCUUAAAu |||:| | || :|||||| aaAUGGAACUUUUUAAAUGAAUUUu 2 22 34 58 [dm3:2R:5880616-5880640:+] 0.5332 132 6 -7.18 -0.1157 MIMAT0005027 dme-miR-1014 36040 TER94 gacguuuacuUUUACUUAAAa |||||||||| ggaacuuuuuAAAUGAAUUUu 2 12 38 58 [dm3:2R:5880620-5880640:+] 0.5332 155 7 -8.66 -1.1902 MIMAT0005027 dme-miR-1014 36040 TER94 gacguuuacuUUUACUUAAAa |||||||||| ggaacuuuuuAAAUGAAUUUu 2 12 38 58 [dm3:2R:5880620-5880640:+] 0.5332 155 7 -8.66 -1.1898

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TER94 RAID00346832 dme-miR-274-5p miRNA MIMAT0000332 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID00466353 dme-miR-1014-3p miRNA MIMAT0005027 TER94 mRNA 36040 Prediction 0.2381 TER94 RAID00576793 dme-miR-1006-3p miRNA MIMAT0005019 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID00835140 dme-miR-927-5p miRNA MIMAT0005501 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID00899438 dme-miR-971-3p miRNA MIMAT0005487 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID01421876 dme-miR-985-3p miRNA MIMAT0005502 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID01582924 dme-miR-969-5p miRNA MIMAT0005485 TER94 mRNA 36040 Prediction 0.2202 TER94 RAID01912371 dme-miR-10-3p miRNA MIMAT0012531 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID02216008 dme-miR-252-5p miRNA MIMAT0005516 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID03081550 dme-miR-190-5p miRNA MIMAT0005467 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID03634619 dme-miR-315-5p miRNA MIMAT0000407 TER94 mRNA 36040 Prediction 0.1828 TER94 RAID03764769 dme-miR-959-3p miRNA MIMAT0005473 TER94 mRNA 36040 Prediction 0.1828