DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 34896 cul-3 cacGUUUGCUAAAAGUUGUgu || | | ||||||| ugaCAUUCAAAAUUCAACAgu 3 19 258 278 [dm3:2L:15266096-15266116:-] 0.5638 130 0 -7.93 -0.1683 MIMAT0000364 dme-miR-289 34896 cul-3 ucagcguccgaGGUGAAUUUAUAAAu || || | |||||| uaauuauuaucCCUCUAAUAUAUUUc 2 16 308 333 [dm3:2L:15266041-15266066:-] 0.5638 127 6 -6.53 -0.2289 MIMAT0012196 dme-miR-2489 34896 cul-3 ugacGUUUAUG---UUGUAU-GUUAu |:||||| ||:||| |||| aaccCGAAUACAUAAAUAUAUCAAUu 2 19 183 208 [dm3:2L:15266166-15266191:-] 0.5383 129 0 -12.56 -0.7921 MIMAT0012198 dme-miR-2491 34896 cul-3 ucguUGACGUUUCCGUUGUCGc |:| ||| ||||||: ugacAUUCAAAAUUCAACAGUu 2 19 258 279 [dm3:2L:15266095-15266116:-] 0.5638 138 0 -10.09 -0.1399 MIMAT0012207 dme-miR-2496 34896 cul-3 auacgcacacacucaCGGGGCg |||||| uauaucaauuagugcGCCCCGa 2 8 199 220 [dm3:2L:15266154-15266175:-] 0.5383 120 6 -17.06 -0.1365 MIMAT0000105 dme-miR-1 34896 cul-3 gaGGUAUGA-A---GAAAUGUAAGgu |||| :| | | | |||||| acCCAUUUUGUAAGCCUGACAUUCaa 3 21 242 267 [dm3:2L:15266107-15266132:-] 0.5638 126 0 -11.03 -0.1087 MIMAT0000347 dme-miR-283 34896 cul-3 ucUUA-AUGGUCGACUAUAAau ||| ||:: :||||||| cuAAUAUAUUUCUUGAUAUUcu 3 20 322 343 [dm3:2L:15266031-15266052:-] 0.5638 138 0 -7.88 -0.1270 MIMAT0005478 dme-miR-964 34896 cul-3 uucaAUUCGAGGGG--AUAAGAuu || :|:|:: |||||| cuaaUAUAUUUCUUGAUAUUCUcu 3 19 322 345 [dm3:2L:15266029-15266052:-] 0.5638 125 0 -6.88 -0.1143

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cul3 RAID00318969 dme-miR-1011-3p miRNA MIMAT0005024 Cul3 mRNA 34896 Prediction 0.1828 Cul3 RAID00508347 dme-miR-283-5p miRNA MIMAT0000347 Cul3 mRNA 34896 Prediction 0.2202 Cul3 RAID00605751 dme-miR-7-5p miRNA MIMAT0000112 Cul3 mRNA 34896 Prediction 0.1828 Cul3 RAID01517940 dme-miR-1-3p miRNA MIMAT0000105 Cul3 mRNA 34896 Prediction 0.1828 Cul3 RAID01637452 dme-miR-960-5p miRNA MIMAT0005474 Cul3 mRNA 34896 Prediction 0.1828 Cul3 RAID02050547 dme-miR-14-3p miRNA MIMAT0000120 Cul3 mRNA 34896 Prediction 0.1828 Cul3 RAID02268597 dme-miR-277-3p miRNA MIMAT0000338 Cul3 mRNA 34896 Prediction 0.1828 Cul3 RAID02307289 dme-miR-964-5p miRNA MIMAT0005478 Cul3 mRNA 34896 Prediction 0.1828 Cul3 RAID02342898 dme-miR-970-3p miRNA MIMAT0005486 Cul3 mRNA 34896 Prediction 0.1828 Cul3 RAID03558332 dme-miR-1012-3p miRNA MIMAT0005025 Cul3 mRNA 34896 Prediction 0.1828