DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 47594 aPKC ucagcguccgagGUGAAUUUAUAAAu ||: || |||||| caacaacaaaaaCAUAUAUAUAUUUa 2 15 398 423 [dm3:2R:10832617-10832642:-] 0.4630 126 6 -6.74 -0.2495 MIMAT0005475 dme-miR-961 47594 aPKC uagagUCAAUGACCACUAGUUu || || | ||||||| aagaaAG-UAAUAUUGAUCAAa 2 18 679 699 [dm3:2R:10832341-10832361:-] 0.4255 147 7 -9.48 -1.1047 MIMAT0005488 dme-miR-972 47594 aPKC cggaUUUAUAAGCAUAACAUGu :|||| ||||||||: aaacGAAUA-AAGUAUUGUAUa 2 19 1053 1073 [dm3:2R:10831967-10831987:-] 0.5992 140 0 -13.55 -0.1918 MIMAT0005499 dme-miR-983 47594 aPKC agUAAUCAAGCUUUGCAUAAUa || | ||:| | |||||| auAUAACUUUGUUAAGUAUUAa 2 21 335 356 [dm3:2R:10832684-10832705:-] 0.4827 132 6 -6.37 -0.1519 MIMAT0005502 dme-miR-985 47594 aPKC acgggcUGGUAACCUUGUAAac | || | |||||| aaugguAACAAU--AACAUUca 3 17 304 323 [dm3:2R:10833639-10833658:-] 0.6790 121 0 -5.26 -0.6064 MIMAT0005509 dme-miR-991 47594 aPKC ugaAAGGUUUGAUGUUGAAAuu | ::||| | |||||| aagUAUUAAAAAAAAACUUUug 3 20 348 369 [dm3:2R:10832671-10832692:-] 0.4827 135 0 -6.44 -0.1070 MIMAT0005018 dme-miR-1005 47594 aPKC gacgcuuaaUUUCUAAGGUCu :|:|||||||| cucuauggcGAGGAUUCCAGu 2 13 40 60 [dm3:2R:10833902-10833922:-] 0.6797 152 7 -19.21 -0.2888 MIMAT0005018 dme-miR-1005 47594 aPKC gacgcuuaaUUUCUAAGGUCu :|:|||||||| cucuauggcGAGGAUUCCAGu 2 13 40 60 [dm3:2R:10833902-10833922:-] 0.6797 152 7 -19.21 -0.4118 MIMAT0005022 dme-miR-1009 47594 aPKC gacuuUACAUUGUUAAAA--ACUCu || |||::||||| |||| uuaguAUAUAAUGAUUUUACUGAGc 2 19 882 906 [dm3:2R:10832134-10832158:-] 0.4606 122 0 -7.08 -0.9336 MIMAT0005026 dme-miR-1013 47594 aPKC gcucaagccgUAUGAAAAUa | ||||||: uauuaaaaaaAAACUUUUGu 2 11 351 370 [dm3:2R:10832670-10832689:-] 0.4827 126 0 -6.85 -0.1090 MIMAT0011784 dme-miR-2279* 47594 aPKC uuaaagUGUGUGUCUAUAAAUu |||:|:| ||||||| acaaaaACAUAUAUAUAUUUAu 2 17 403 424 [dm3:2R:10832616-10832637:-] 0.4630 164 7 -11.05 -1.1626 MIMAT0011787 dme-miR-2280* 47594 aPKC agucaaucgaACCUUCAUUUAa || ||| |||| aauaaucaaaUGCAAGCAAAUa 2 13 325 346 [dm3:2R:10833616-10833637:-] 0.6790 120 0 -2.11 -0.1331 MIMAT0011788 dme-miR-2281* 47594 aPKC aacGUAGACGUCGACGUCUAUUa || |||| ||| |||| aauCAAAUGCA--AGCAAAUAAu 2 21 328 348 [dm3:2R:10833614-10833634:-] 0.6790 121 0 -10.03 -0.1611 MIMAT0011791 dme-miR-2283 47594 aPKC uaacagcaUAAGUACUAUAAAag || :|| |||||| acaaaaacAUAUAU-AUAUUUau 3 16 403 424 [dm3:2R:10832616-10832637:-] 0.4630 129 0 -2.62 -0.1105 MIMAT0011791 dme-miR-2283 47594 aPKC uaacAGCAUAAGUACUA-UAAAAg | |||| || || ||||| uaauUAGUAU--AUAAUGAUUUUa 2 20 879 900 [dm3:2R:10832140-10832161:-] 0.4564 120 0 -5.91 -0.8937 MIMAT0012196 dme-miR-2489 47594 aPKC ugacGUUUAU-GUUG-UA-UGUUAu ||: || ||:| || ||||| ggauCAGUUAGCAGCAAUAACAAUc 2 19 124 148 [dm3:2R:10833814-10833838:-] 0.6144 120 0 -10.41 -0.2852 MIMAT0012196 dme-miR-2489 47594 aPKC ugacGUUUAU-GUUG-UA-UGUUAu ||: || ||:| || ||||| ggauCAGUUAGCAGCAAUAACAAUc 2 19 124 148 [dm3:2R:10833814-10833838:-] 0.6144 120 0 -10.41 -0.4072 MIMAT0012198 dme-miR-2491 47594 aPKC ucGUUGACGUUUCCGUUGUCGc |||| ||: |||||||| auCAACAUCAGCAGCAACAGCa 2 21 266 287 [dm3:2R:10833675-10833696:-] 0.6790 164 7 -19.01 -0.7920 MIMAT0012198 dme-miR-2491 47594 aPKC ucGUUGACGUUUCCGUUGUCGc |||| ||: |||||||| auCAACAUCAGCAGCAACAGCa 2 21 266 287 [dm3:2R:10833675-10833696:-] 0.6790 164 7 -19.01 -0.9884 MIMAT0012199 dme-miR-2492 47594 aPKC aaacuUUCGAGAGCUGUUUUGUa || :| :||||||| caaucAAUUUAAAUGCAAAACAa 2 19 725 747 [dm3:2R:10832293-10832315:-] 0.4255 142 7 -6.68 -0.8585 MIMAT0012199 dme-miR-2492 47594 aPKC aaACUU--UCGAGAGCUGUU-UUGUa ||:| ||:| | :||| |||| ggUGGAUCAGUUAGCAGCAAUAACAa 2 22 121 146 [dm3:2R:10833816-10833841:-] 0.6144 120 0 -9.54 -0.3832 MIMAT0012199 dme-miR-2492 47594 aPKC aaACUU--UCGAGAGCUGUU-UUGUa ||:| ||:| | :||| |||| ggUGGAUCAGUUAGCAGCAAUAACAa 2 22 121 146 [dm3:2R:10833816-10833841:-] 0.6144 120 0 -9.54 -0.5268 MIMAT0012202 dme-miR-2494* 47594 aPKC aaggGUUAGA---CCACGUGAAUg ||||:| |||||||| aaaaCAAUUUCAAAUUGCACUUAa 2 18 762 785 [dm3:2R:10832255-10832278:-] 0.4149 148 7 -13.95 -1.0780 MIMAT0012209 dme-miR-2497 47594 aPKC gacguuUGUAACAUUUACA-ACa || |||| ||||| || aauguuAC-UUGUUAAUGUAUGa 2 17 595 616 [dm3:2R:10832424-10832445:-] 0.4115 122 0 -10.12 -1.0068 MIMAT0012216 dme-miR-2501 47594 aPKC aaucgggucCGUGAGGUUUG-AAUg ||||| :|||| ||| uuucaaauuGCACU-UAAACGUUAc 2 16 769 792 [dm3:2R:10832248-10832271:-] 0.4149 121 0 -13.75 -0.5531 MIMAT0000105 dme-miR-1 47594 aPKC gagguAUGAAGA-AAUGUAAGGu |::||:| |:|||||| acuuuUGUUUUUAAUGCAUUCCa 2 18 363 385 [dm3:2R:10832655-10832677:-] 0.4827 140 6 -17.64 -0.1108 MIMAT0000105 dme-miR-1 47594 aPKC gagguaugaagaAAUGUAAGgu | |||||| uaaugguaacaaUAACAUUCau 3 11 303 324 [dm3:2R:10833638-10833659:-] 0.6790 122 0 -6.17 -0.4606 MIMAT0000108 dme-miR-3 47594 aPKC acucugugugaaacGGGUCACu :|||||| ucuauggcgaggauUCCAGUGa 2 9 41 62 [dm3:2R:10833900-10833921:-] 0.6797 124 6 -16.61 -0.1150 MIMAT0000113 dme-miR-8 47594 aPKC cuguagaaauggacugUCAUAAu |||||| caauauaacuuuguuaAGUAUUa 2 8 333 355 [dm3:2R:10832685-10832707:-] 0.4827 120 6 -11.21 -0.1570 MIMAT0000113 dme-miR-8 47594 aPKC cuguagaaauggacugUCAUAAu |||||| aaagaaaaacgaauaaAGUAUUg 2 8 1047 1069 [dm3:2R:10831971-10831993:-] 0.5992 120 6 -6.93 -0.3748 MIMAT0000338 dme-miR-277 47594 aPKC acagcauggucuaucACGUAAAu ||||||| acgauuugagucuccUGCAUUUg 2 9 80 102 [dm3:2R:10833860-10833882:-] 0.7715 140 7 -11.50 -0.3080 MIMAT0000338 dme-miR-277 47594 aPKC acagcauggucuaucACGUAAAu ||||||| acgauuugagucuccUGCAUUUg 2 9 80 102 [dm3:2R:10833860-10833882:-] 0.7715 140 7 -11.50 -0.4358 MIMAT0000347 dme-miR-283 47594 aPKC ucuuaauggucgacUAUAAAu |||||| acaaaaacauauauAUAUUUa 2 8 403 423 [dm3:2R:10832617-10832637:-] 0.4630 120 6 -3.59 -0.2473 MIMAT0000354 dme-miR-276b 47594 aPKC ucucgUGCCAUAAUUCA-AGGAu ||| | ||:||| |||| ggcugACGAU-UUGAGUCUCCUg 2 18 75 96 [dm3:2R:10833866-10833887:-] 0.7715 123 0 -14.90 -0.8113 MIMAT0000354 dme-miR-276b 47594 aPKC ucucgUGCCAUAAUUCA-AGGAu ||| | ||:||| |||| ggcugACGAU-UUGAGUCUCCUg 2 18 75 96 [dm3:2R:10833866-10833887:-] 0.7715 123 0 -14.90 -0.9590 MIMAT0000365 dme-bantam 47594 aPKC uuaGUCGAAAGUUUUACU-AGAGu ::||| |:| ||| |||| ccgUGGCUGACGAUUUGAGUCUCc 2 21 71 94 [dm3:2R:10833868-10833891:-] 0.7715 120 0 -13.55 -0.7041 MIMAT0000365 dme-bantam 47594 aPKC uuaGUCGAAAGUUUUACU-AGAGu ::||| |:| ||| |||| ccgUGGCUGACGAUUUGAGUCUCc 2 21 71 94 [dm3:2R:10833868-10833891:-] 0.7715 120 0 -13.55 -0.8626 MIMAT0000401 dme-miR-309 47594 aPKC aucCUGUUUGAAAUGGGUCACg |:|:|: | :|||||| uauGGCGAGGAU--UCCAGUGa 2 20 43 62 [dm3:2R:10833900-10833919:-] 0.6797 128 6 -17.66 -0.1054 MIMAT0000407 dme-miR-315 47594 aPKC cgaaagacucguuguUAGUUUu |||||| uuaaaauuaguauauAUCAAAa 2 8 503 524 [dm3:2R:10832516-10832537:-] 0.3974 120 6 -8.28 -0.1814 MIMAT0000407 dme-miR-315 47594 aPKC cgaaagacucGUUGUUAGUUUu :||:||||||| auaacauucaUAAUAAUCAAAu 2 13 314 335 [dm3:2R:10833627-10833648:-] 0.6790 152 7 -9.84 -1.2647 MIMAT0000410 dme-miR-318 47594 aPKC acucuAU-UUGUUUC--GGGUCACu || ::|:|:| :|||||| ggcucUAUGGCGAGGAUUCCAGUGa 2 18 38 62 [dm3:2R:10833900-10833922,10833982-10833983:-] 0.6725 131 6 -18.86 -0.1093 MIMAT0005467 dme-miR-190 47594 aPKC guUGGUUCUUAUAGUUUGUAUAga | ||| || | |||||||| acAACAACAACA-AAAACAUAUau 3 23 394 416 [dm3:2R:10832624-10832646:-] 0.4729 144 0 -10.91 -0.1222 MIMAT0005472 dme-miR-375 47594 aPKC auugAAUUCGGUUUGCUUGUUu | ||| |||||||:|| cauaUAAAGAAAAACGAAUAAa 2 19 1042 1063 [dm3:2R:10831977-10831998:-] 0.6950 150 0 -16.05 -0.1116 MIMAT0005487 dme-miR-971 47594 aPKC agugACAUUCUUCAUUG-UGGUu | | | |||||| |||| ccgaUUUUAUUAGUAACAACCAa 2 19 792 814 [dm3:2R:10832226-10832248:-] 0.4149 122 0 -14.01 -1.0532 MIMAT0005492 dme-miR-976 47594 aPKC cguaacuacuauugAUUAGGUu ||||||| ccagcaucuuuuugUAAUCCAc 2 9 458 479 [dm3:2R:10832561-10832582:-] 0.4117 140 7 -8.02 -0.5567 MIMAT0005492 dme-miR-976 47594 aPKC cguaacuACUAUUGAUUAGGUu | |||| ||||| | auaacauUCAUAA-UAAUCAAa 2 16 314 334 [dm3:2R:10833628-10833648:-] 0.6790 121 0 -5.94 -0.1712 MIMAT0005497 dme-miR-981 47594 aPKC acguccaaagcagcUGUUGCuu |||||| uuaaauuuccaaauACAACGca 3 9 653 674 [dm3:2R:10832366-10832387:-] 0.4255 120 0 -8.25 -0.1032 MIMAT0005507 dme-miR-137 47594 aPKC gaugcacauaagaGUUCGUUAu |||||||| uuaaagaacauagCAAGCAAUc 2 10 708 729 [dm3:2R:10832311-10832332:-] 0.4255 145 7 -9.69 -0.3683 MIMAT0005507 dme-miR-137 47594 aPKC gaugcacauaagaGUUCGUUau ||||||| uaauaaucaaaugCAAGCAAau 3 10 324 345 [dm3:2R:10833617-10833638:-] 0.6790 125 0 -8.26 -0.1211 MIMAT0005516 dme-miR-252 47594 aPKC gaggacgccGUGAUCAUGAAUc |||| ||||||| aaugcauucCACU-GUACUUAc 2 14 375 395 [dm3:2R:10832645-10832665:-] 0.4827 151 7 -13.73 -0.7024 MIMAT0005520 dme-miR-1000 47594 aPKC ugacgacacuguccUGUUAUa |||||| ucaucauaaugguaACAAUAa 2 8 297 317 [dm3:2R:10833645-10833665:-] 0.6790 120 6 -6.60 -0.2927 MIMAT0005024 dme-miR-1011 47594 aPKC gacgcucgcuaaacUUGGUUAUu |||||||| auuuuauuaguaacAACCAAUAu 2 10 795 817 [dm3:2R:10832223-10832245:-] 0.4149 145 7 -7.54 -0.6585

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score aPKC RAID00068139 dme-miR-283-5p miRNA MIMAT0000347 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID00355131 dme-miR-961-5p miRNA MIMAT0005475 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID00504322 dme-miR-33-5p miRNA MIMAT0000342 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID00698207 dme-miR-312-3p miRNA MIMAT0000404 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID00812456 dme-miR-958-3p miRNA MIMAT0005471 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID00865048 dme-miR-3-3p miRNA MIMAT0000108 aPKC mRNA 47594 Prediction 0.2202 aPKC RAID01056703 dme-miR-971-3p miRNA MIMAT0005487 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID01086338 dme-miR-1-3p miRNA MIMAT0000105 aPKC mRNA 47594 Prediction 0.2381 aPKC RAID01143766 dme-miR-375-3p miRNA MIMAT0005472 aPKC mRNA 47594 Prediction 0.2202 aPKC RAID01222479 dme-miR-960-5p miRNA MIMAT0005474 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID01315527 dme-miR-1002-5p miRNA MIMAT0005483 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID01531867 dme-miR-311-3p miRNA MIMAT0000403 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID01669349 dme-miR-957-3p miRNA MIMAT0005470 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID01852264 dme-miR-277-3p miRNA MIMAT0000338 aPKC mRNA 47594 Prediction 0.2455 aPKC RAID01899921 dme-miR-92a-3p miRNA MIMAT0000334 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02009295 dme-miR-318-3p miRNA MIMAT0000410 aPKC mRNA 47594 Prediction 0.2381 aPKC RAID02345304 dme-miR-276b-3p miRNA MIMAT0000354 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02364521 dme-miR-310-3p miRNA MIMAT0000402 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02407712 dme-miR-977-3p miRNA MIMAT0005493 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02416897 dme-miR-1005-3p miRNA MIMAT0005018 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02505803 dme-miR-986-5p miRNA MIMAT0005503 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02630820 dme-miR-315-5p miRNA MIMAT0000407 aPKC mRNA 47594 Prediction 0.2202 aPKC RAID02722687 dme-miR-190-5p miRNA MIMAT0005467 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02830048 dme-miR-92b-3p miRNA MIMAT0000358 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02923178 dme-miR-985-3p miRNA MIMAT0005502 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID02994657 dme-miR-309-3p miRNA MIMAT0000401 aPKC mRNA 47594 Prediction 0.2202 aPKC RAID03041774 dme-miR-8-3p miRNA MIMAT0000113 aPKC mRNA 47594 Prediction 0.2381 aPKC RAID03097838 dme-bantam-3p miRNA MIMAT0000365 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID03175259 dme-miR-967-5p miRNA MIMAT0005482 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID03263360 dme-miR-976-3p miRNA MIMAT0005492 aPKC mRNA 47594 Prediction 0.2202 aPKC RAID03327609 dme-miR-981-3p miRNA MIMAT0005497 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID03477782 dme-miR-252-5p miRNA MIMAT0005516 aPKC mRNA 47594 Prediction 0.2381 aPKC RAID03487593 dme-miR-932-5p miRNA MIMAT0005479 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID03591685 dme-miR-989-3p miRNA MIMAT0005506 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID03662586 dme-miR-1000-5p miRNA MIMAT0005520 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID03669176 dme-miR-137-3p miRNA MIMAT0005507 aPKC mRNA 47594 Prediction 0.2381 aPKC RAID03882188 dme-miR-313-3p miRNA MIMAT0000405 aPKC mRNA 47594 Prediction 0.1828 aPKC RAID04000243 dme-miR-1011-3p miRNA MIMAT0005024 aPKC mRNA 47594 Prediction 0.2202