DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 40170 Mi-2 auaGUAAAGU-AUACGUUGCAUUUAUGu :|| | | || :||: ||:|||| uacUAUGUGAUUACAUAAUCUAGAUACa 2 25 278 305 [dm3:3L:19875177-19875204:-] 0.5503 143 0 -11.51 -0.1035 MIMAT0005464 dme-miR-iab-4as-3p 40170 Mi-2 auuUGCAUAUGACUUACAUAGg || ||| | |||||||: gauACAAAUA-UAAAUGUAUUu 2 20 300 320 [dm3:3L:19875162-19875182:-] 0.5503 141 0 -7.48 -0.1036 MIMAT0005499 dme-miR-983 40170 Mi-2 aguAAUCAAGCUUUGCAUAAua | || | | |||||| uguUAAGAGC-AUUCGUAUUcc 3 20 19 39 [dm3:3L:19875510-19875530:-] 0.5645 121 0 -6.37 -0.1021 MIMAT0005509 dme-miR-991 40170 Mi-2 ugaAAGGUUUG-AUGU-UGAAAUu ||||| :| |:| |||||| guaUUCCAUGCAAAUAUACUUUAc 2 20 33 56 [dm3:3L:19875493-19875516:-] 0.5645 126 6 -9.00 -1.0716 MIMAT0011784 dme-miR-2279* 40170 Mi-2 uuaaagUGUGUGUCUAUAAAUu |:|:| | :|||||| auacaaAUAUAAAUGUAUUUAa 2 17 301 322 [dm3:3L:19875160-19875181:-] 0.5503 140 6 -7.75 -0.3009 MIMAT0011784 dme-miR-2279* 40170 Mi-2 uuAAAGUGUGUGUCUAU-AAAUu || ||::|| | ||| |||| uaUUCCAUGCAAAUAUACUUUAc 2 21 34 56 [dm3:3L:19875493-19875515:-] 0.5645 132 0 -6.09 -1.0766 MIMAT0011786 dme-miR-2280 40170 Mi-2 uaUAAAAUAACGGUUCGAUUCu | |||| | ||||||||| auACUUUACU--CAAGCUAAGa 2 21 48 67 [dm3:3L:19875482-19875501:-] 0.5645 161 7 -16.07 -1.2782 MIMAT0012531 dme-miR-10-3p 40170 Mi-2 uuUGGA--GAGAUCUUGGCUUAAAc ||:| ||| || |||||| auACUUUACUCAAGCUAAGAAUUUa 2 22 48 72 [dm3:3L:19875477-19875501:-] 0.5645 124 6 -8.86 -0.2962 MIMAT0000346 dme-miR-282 40170 Mi-2 ugucuguuucggaucaucuccGAUCUAa |||||| ucuacuaugugauuacauaauCUAGAUa 2 8 276 303 [dm3:3L:19875179-19875206:-] 0.5503 120 6 -11.34 -0.3303 MIMAT0000391 dme-miR-305 40170 Mi-2 gucucGUGGACUACUUCAUGUUa ||: || |||||||| guucaCAUACGA-CAAGUACAAu 2 19 238 259 [dm3:3L:19875223-19875244:-] 0.5503 148 7 -13.13 -0.9119 MIMAT0000391 dme-miR-305 40170 Mi-2 guCUCGUGGACUACUUC-AUGUUa || :|| | || || ||||| guGAUUACAUAAUCUAGAUACAAa 2 22 284 307 [dm3:3L:19875175-19875198:-] 0.5503 125 0 -6.68 -1.2908 MIMAT0005466 dme-miR-955 40170 Mi-2 cugUGAGUUUGGAGACGUGCUAc |:|:|||::||| |||||| agaAUUUAAAUUUCUACACGAUa 2 21 65 87 [dm3:3L:19875395-19875397,19875465-19875484:-] 0.5574 152 6 -21.04 -0.2453 MIMAT0005470 dme-miR-957 40170 Mi-2 cgGAGUCA-AAA---CC--UGCCAAAGu :||:|| ||| || ||||||| agUUCGGUGUUUCCAGGCUUCGGUUUCu 2 21 165 192 [dm3:3L:19875290-19875317:-] 0.5503 145 7 -18.52 -0.3058 MIMAT0005486 dme-miR-970 40170 Mi-2 uaucggcgcaCACAGAAUAcu || |||||| aaguacaauaGU-UCUUAUua 3 12 251 270 [dm3:3L:19875212-19875231:-] 0.5503 121 0 -4.39 -0.1000 MIMAT0005504 dme-miR-987 40170 Mi-2 guaGUUAGGUCUG-AUAAAUGAAAu :| |||| :| || |||||| ucgUAUUCCAUGCAAAUAUACUUUa 2 22 31 55 [dm3:3L:19875494-19875518:-] 0.5645 132 6 -12.99 -0.1532

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Mi-2 RAID00569923 dme-miR-955-5p miRNA MIMAT0005466 Mi-2 mRNA 40170 Prediction 0.2202 Mi-2 RAID01094308 dme-bantam-3p miRNA MIMAT0000365 Mi-2 mRNA 40170 Prediction 0.1828 Mi-2 RAID02136867 dme-miR-10-3p miRNA MIMAT0012531 Mi-2 mRNA 40170 Prediction 0.2202 Mi-2 RAID02551551 dme-miR-33-5p miRNA MIMAT0000342 Mi-2 mRNA 40170 Prediction 0.1828 Mi-2 RAID02588153 dme-miR-305-5p miRNA MIMAT0000391 Mi-2 mRNA 40170 Prediction 0.2202 Mi-2 RAID02896580 dme-miR-308-3p miRNA MIMAT0000399 Mi-2 mRNA 40170 Prediction 0.1828 Mi-2 RAID02992418 dme-miR-282-5p miRNA MIMAT0000346 Mi-2 mRNA 40170 Prediction 0.2202 Mi-2 RAID03504896 dme-miR-1014-3p miRNA MIMAT0005027 Mi-2 mRNA 40170 Prediction 0.2202 Mi-2 RAID03662768 dme-miR-1006-3p miRNA MIMAT0005019 Mi-2 mRNA 40170 Prediction 0.1828 Mi-2 RAID03690459 dme-miR-987-5p miRNA MIMAT0005504 Mi-2 mRNA 40170 Prediction 0.2202 Mi-2 RAID03739139 dme-miR-957-3p miRNA MIMAT0005470 Mi-2 mRNA 40170 Prediction 0.2202 Mi-2 RAID03972148 dme-miR-970-3p miRNA MIMAT0005486 Mi-2 mRNA 40170 Prediction 0.1828