DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 45922 rap auaGUAAAGUAU-ACGUUGCAUUUAUgu || || | | :||: |||||| aaaCAAAGCAAAGUAUAAUAUAAAUAaa 3 25 73 100 [dm3:X:4561926-4561953:-] 0.4260 135 0 -8.87 -0.1024 MIMAT0000343 dme-miR-280 45922 rap auaguaaaGUAUACGUUGCAUUUAUgu || |||:| |||||| cgaaaacaCA-AUGUAUAUUAAAUAaa 3 20 653 678 [dm3:X:4561348-4561373:-] 0.4383 133 0 -7.19 -0.1022 MIMAT0000343 dme-miR-280 45922 rap auaguaaaGUAUACGUUG-C--AUUUAUgu || ||||: | |||||| ugaccccaCAGCAGCAAUAGAUUAAAUAaa 3 20 238 267 [dm3:X:4561759-4561788:-] 0.4380 125 0 -7.22 -0.1209 MIMAT0000394 dme-miR-306* 45922 rap cguguccguguCUCACUGGGGg | |||||||| uguaaauuguuGUGUGACCCCa 2 12 224 245 [dm3:X:4561781-4561802:-] 0.4366 147 7 -17.98 -0.7253 MIMAT0005464 dme-miR-iab-4as-3p 45922 rap auuugcAUAUGACUUACAUAGg | | :| |||||||: ugcugcUUUUUUAAAUGUAUUg 2 17 464 485 [dm3:X:4561541-4561562:-] 0.4383 136 0 -7.31 -0.1129 MIMAT0005481 dme-miR-966 45922 rap ggugUGUCGGGUGUUG-GGUGu | | :| ||||| |||| uuggAAAAUCAACAACACCACa 2 18 410 431 [dm3:X:4561595-4561616:-] 0.4383 121 0 -15.36 -0.8358 MIMAT0005489 dme-miR-973 45922 rap uuUUAGCUUCAAGUU--GG-UGGUUGGu || |||| ||| || ||||||| gaAACCGAAAAACAAAGCCAACCAACCa 2 24 111 138 [dm3:X:4561888-4561915:-] 0.4604 161 7 -22.89 -0.9358 MIMAT0005502 dme-miR-985 45922 rap acggGCUGGUAA-CCUUGUAAAc ||:: ||| | ||||||| agaaCGGUAAUUAGCAACAUUUa 2 19 289 311 [dm3:X:4561715-4561737:-] 0.4407 157 7 -10.63 -0.4564 MIMAT0005502 dme-miR-985 45922 rap acgggcugguaaccUUGUAAAc ||||||| cuuuauuucaagcaAACAUUUa 2 9 595 616 [dm3:X:4561410-4561431:-] 0.4383 140 7 -4.63 -1.0045 MIMAT0005502 dme-miR-985 45922 rap acgggcugguaaccuUGUAAAc |||||| gauaccccuacauauACAUUUa 2 8 528 549 [dm3:X:4561477-4561498:-] 0.4383 120 6 -11.08 -0.1150 MIMAT0005509 dme-miR-991 45922 rap ugaaAGGUUUGAUG-UUGAAAUu ||:||:: || ||||||| agccUCUAAGUAACUAACUUUAu 2 19 578 600 [dm3:X:4561426-4561448:-] 0.4383 161 7 -10.99 -0.8449 MIMAT0005509 dme-miR-991 45922 rap ugaAAGGUUUGAUGUUG-AAAUu ||:|||:| | ||| |||| uuaUUUCAAGC-A-AACAUUUAu 2 20 597 617 [dm3:X:4561409-4561429:-] 0.4383 123 0 -9.16 -0.6885 MIMAT0005509 dme-miR-991 45922 rap ugaaagguUUGAU-GUUG-AAAUu ||:|| |||| |||| agaacgguAAUUAGCAACAUUUAc 2 15 289 312 [dm3:X:4561714-4561737:-] 0.4407 121 0 -6.34 -0.4536 MIMAT0011791 dme-miR-2283 45922 rap uaacAGCAUAAGUACUAUAAAAg |: ||| :|| ||||||| acguUUAUAUAUAU-AUAUUUUu 2 20 551 572 [dm3:X:4561454-4561475:-] 0.4383 157 7 -6.79 -1.0626 MIMAT0012196 dme-miR-2489 45922 rap ugacGUUUAUGUUG--UAUGUUAu :||||| ||| ||||||| auauUAAAUA-AACUUAUACAAUu 2 19 667 689 [dm3:X:4561337-4561359:-] 0.4383 159 7 -10.52 -0.9471 MIMAT0012196 dme-miR-2489 45922 rap ugaCGUUUAUGUUGUAUGU-UAu ||||| |: :||||| || caaGCAAACAU-UUAUACACAUa 2 20 603 624 [dm3:X:4561402-4561423:-] 0.4383 121 0 -10.34 -1.0919 MIMAT0012199 dme-miR-2492 45922 rap aaacUUUCGAGAGCUGUUUUGUa | | | | |||||||| aaacACAACACAACACAAAACAa 2 20 46 68 [dm3:X:4561958-4561980:-] 0.3816 147 7 -7.55 -1.0503 MIMAT0012199 dme-miR-2492 45922 rap aaacuuucgagagcUGUUUUGUa |||||||| caacacaaaacaaaACAAAACAa 2 10 56 78 [dm3:X:4561948-4561970:-] 0.3816 145 7 -7.22 -1.1793 MIMAT0012207 dme-miR-2496 45922 rap auacgcacacacuCACGGGGcg ||||||| acaauuucaaaauGUGCCCCaa 3 10 684 705 [dm3:X:4561321-4561342:-] 0.4761 125 0 -13.38 -0.2672 MIMAT0012209 dme-miR-2497 45922 rap gaCGUUUGU--AACAUUU-ACAACa |||: |: ||||||| ||||| caGCAGUCGUUUUGUAAAUUGUUGu 2 21 212 236 [dm3:X:4561790-4561814:-] 0.4792 135 0 -18.09 -0.2375 MIMAT0012216 dme-miR-2501 45922 rap aaucggguccgugagGUUUGAAUg :||||||| acaauguauauuaaaUAAACUUAu 2 10 660 683 [dm3:X:4561343-4561366:-] 0.4383 141 7 -9.91 -1.0715 MIMAT0012531 dme-miR-10-3p 45922 rap uuUG-GAGAGAUCUUGGCU-UAAAc || || ||| ||:||| |||| acACACUAUCUUUAAUCGACAUUUu 2 22 435 459 [dm3:X:4561567-4561591:-] 0.4383 132 0 -12.22 -0.6925 MIMAT0000120 dme-miR-14 45922 rap auccUCUCUCUUUUUCUGACu || ||| :||||||| uccaAGCGAG-CGAAGACUGa 2 18 11 30 [dm3:X:4561996-4562015:-] 0.3716 151 7 -16.48 -0.7168 MIMAT0000120 dme-miR-14 45922 rap aucCUCUCU-----CUUU-UUC-UGACu |||||| |||| ||| |||| caaGAGAGAUGGCUGAAACAAGAACUGa 2 19 349 376 [dm3:X:4561650-4561677:-] 0.4205 120 0 -18.28 -1.0594 MIMAT0000412 dme-miR-iab-4-5p 45922 rap aguccUAUGUAAGU-CAUAUGCa | |:|| || |||||| ccccuACAUAUACAUUUAUACGu 2 18 532 554 [dm3:X:4561472-4561494:-] 0.4383 124 6 -13.54 -0.1049 MIMAT0005463 dme-miR-iab-4as-5p 45922 rap gccAUAUGGAAGUCAUAUGCAuu ||||| || ||||||| acaUAUACAUU---UAUACGUuu 3 21 537 556 [dm3:X:4561470-4561489:-] 0.4383 140 0 -10.53 -0.1115 MIMAT0005467 dme-miR-190 45922 rap guUGGUUCU--UAU-AGUUUGU-AUAGa | ||| | | | ||| ||| |||| ucAACAACACCACACUCACACACUAUCu 2 23 418 445 [dm3:X:4561581-4561608:-] 0.4383 120 0 -12.45 -0.8660 MIMAT0005479 dme-miR-932 45922 rap gacGUUACGUGAUGCC-UUAACu | | |: |||:|| ||||| aaaCUAAGU-CUAUGGAAAUUGu 2 20 382 403 [dm3:X:4561623-4561644:-] 0.4383 121 0 -13.51 -0.6302 MIMAT0005484 dme-miR-968 45922 rap guUGGGAAAUUACCUAUGA-UGAAu | ||| ||| | | ||| |||| cuAGCCUCUAA-GUA-ACUAACUUu 2 23 576 598 [dm3:X:4561428-4561450:-] 0.4383 122 0 -9.02 -0.9851 MIMAT0005487 dme-miR-971 45922 rap agUGACAUUCU--UCAUUGUGGUu |:|| || | | ||||||| uaAUUGGAAAAUCAACAACACCAc 2 21 407 430 [dm3:X:4561596-4561619:-] 0.4383 151 7 -10.12 -0.3902 MIMAT0005506 dme-miR-989 45922 rap caAGGUGAUGCAGUGU-AGUGu || || || |||| |||| aaUCAACAACACCACACUCACa 2 20 416 437 [dm3:X:4561589-4561610:-] 0.4383 127 0 -13.86 -0.8348 MIMAT0005507 dme-miR-137 45922 rap gaugcacauaagAGUUCGUUAu |:||||||| aauaaauuuaagUUAAGCAAUc 2 11 262 283 [dm3:X:4561743-4561764:-] 0.4174 146 7 -8.10 -0.7656 MIMAT0005507 dme-miR-137 45922 rap gaugcacauaagagUUCGUUau |||||| aacaaaacaaaacaAAGCAAag 3 9 64 85 [dm3:X:4561941-4561962:-] 0.4260 120 0 -4.56 -0.1112 MIMAT0005520 dme-miR-1000 45922 rap ugacgacacuguCCUGUUAUa |||||||| ------------GGACAAUAa 2 10 1 9 [dm3:X:4562017-4562025:-] 0.5998 145 7 -8.67 -0.6723 MIMAT0005027 dme-miR-1014 45922 rap gaCGUUUACUU-U-UAC-UUAAAa |:|::| || | ||| ||||| acGUAGGUAAACACAUGCAAUUUa 2 20 311 334 [dm3:X:4561692-4561715:-] 0.4407 121 0 -4.91 -0.9178

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rap RAID00054874 dme-miR-10-3p miRNA MIMAT0012531 rap mRNA 45922 Prediction 0.1828 rap RAID00547145 dme-miR-iab-8-5p miRNA MIMAT0005463 rap mRNA 45922 Prediction 0.1828 rap RAID01191615 dme-miR-137-3p miRNA MIMAT0005507 rap mRNA 45922 Prediction 0.2202 rap RAID01203133 dme-miR-932-5p miRNA MIMAT0005479 rap mRNA 45922 Prediction 0.1828 rap RAID01356860 dme-miR-iab-4-5p miRNA MIMAT0000412 rap mRNA 45922 Prediction 0.1828 rap RAID01593647 dme-miR-973-5p miRNA MIMAT0005489 rap mRNA 45922 Prediction 0.1828 rap RAID02108716 dme-miR-991-3p miRNA MIMAT0005509 rap mRNA 45922 Prediction 0.1828 rap RAID02247455 dme-miR-989-3p miRNA MIMAT0005506 rap mRNA 45922 Prediction 0.1828 rap RAID02439141 dme-miR-971-3p miRNA MIMAT0005487 rap mRNA 45922 Prediction 0.2202 rap RAID02534245 dme-miR-968-5p miRNA MIMAT0005484 rap mRNA 45922 Prediction 0.1828 rap RAID02581750 dme-miR-1014-3p miRNA MIMAT0005027 rap mRNA 45922 Prediction 0.1828 rap RAID03143678 dme-miR-190-5p miRNA MIMAT0005467 rap mRNA 45922 Prediction 0.1828 rap RAID03515694 dme-miR-14-3p miRNA MIMAT0000120 rap mRNA 45922 Prediction 0.2202 rap RAID03586026 dme-miR-1000-5p miRNA MIMAT0005520 rap mRNA 45922 Prediction 0.2202 rap RAID03914981 dme-miR-985-3p miRNA MIMAT0005502 rap mRNA 45922 Prediction 0.1828