DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 42089 CG5319 gccccgcucucuuACUAUUCc ||||||| gauuuuuugcuuuUGAUAAGa 2 9 1148 1168 [dm3:3R:13215850-13215870:+] 0.5924 140 7 -5.65 -1.2313 MIMAT0000343 dme-miR-280 42089 CG5319 auaGUAAAGUAUACGUUGCAUUUAUGu :| ||:| || ||| |||||| augUACUUUA-AU-CAAACAAAAUACa 2 25 1240 1264 [dm3:3R:13215942-13215966:+] 0.6026 128 6 -9.46 -0.2092 MIMAT0005464 dme-miR-iab-4as-3p 42089 CG5319 auuUGCAUAUGACUUAC-AUAGg |: ||||: |||| |||| uauAUCUAUAUAAAAUGUUAUCc 2 20 1190 1212 [dm3:3R:13215892-13215914:+] 0.6026 127 0 -10.78 -1.1944 MIMAT0005475 dme-miR-961 42089 CG5319 uagagucaaugaCCACUAGUuu | |||||| aaaaucgaaaaaGUUGAUCAua 3 11 512 533 [dm3:3R:13215214-13215235:+] 0.5385 122 0 -7.00 -0.1260 MIMAT0005488 dme-miR-972 42089 CG5319 cggauuuAUAAGC--AUAACAUGu | ||:| ||||||| ucggauuUCUUUGGAAAUUGUACu 2 16 1124 1147 [dm3:3R:13215826-13215849:+] 0.5822 142 7 -9.31 -0.9073 MIMAT0005509 dme-miR-991 42089 CG5319 ugAAAGGUUUGAUGUUGAAAUu | | || || :||||||| caUAUACACUCU-UAACUUUAu 2 21 530 550 [dm3:3R:13215232-13215252:+] 0.5385 150 7 -8.37 -0.9378 MIMAT0005509 dme-miR-991 42089 CG5319 ugaaagguuugauguUGAAAUu |||||| cuauuaccauuauguACUUUAa 2 8 1229 1250 [dm3:3R:13215931-13215952:+] 0.6026 120 6 -10.40 -0.1343 MIMAT0005022 dme-miR-1009 42089 CG5319 gacUUUACAUU-GUUA--AAAAC-UCu ||:|| || |||| ||||| || agcAAGUGAAAUCAAUGGUUUUGCAGu 2 21 434 460 [dm3:3R:13215136-13215162:+] 0.5177 130 0 -8.70 -0.3387 MIMAT0005022 dme-miR-1009 42089 CG5319 gacUUUACAUUGU-UAAAAACUCu | || || :| ||||||| | aauACAU-UAUUAGAUUUUUGCGa 2 21 1259 1281 [dm3:3R:13215961-13215983:+] 0.6026 125 0 -6.59 -0.1692 MIMAT0011787 dme-miR-2280* 42089 CG5319 agucaaucgaaCCUUCAUUUAa | |||||||| gugcagcacaaGAAAGUAAAUu 2 12 143 164 [dm3:3R:13214845-13214866:+] 0.5664 147 7 -9.64 -0.7245 MIMAT0011788 dme-miR-2281* 42089 CG5319 aaCGUAGACG---UCGACGUCUAUua ||| | || || | |||||| caGCAACCGCAAAAGAUACAGAUAca 3 22 94 119 [dm3:3R:13214796-13214821:+] 0.6087 136 0 -10.11 -0.1675 MIMAT0011788 dme-miR-2281* 42089 CG5319 aacGU-AGACGU-CGACGUCUAUUa || ||| | :| :|||||| auaCACUCUUAACUUUAUAGAUAAa 2 21 533 557 [dm3:3R:13215235-13215259:+] 0.5385 130 6 -9.69 -0.1069 MIMAT0011789 dme-miR-2281 42089 CG5319 cguuaugacgUCUAUGUCUAu |||||||||| caaccgcaaaAGAUACAGAUa 2 12 97 117 [dm3:3R:13214799-13214819:+] 0.6087 155 7 -16.88 -1.0742 MIMAT0011791 dme-miR-2283 42089 CG5319 uaacaGCAUA-AGUACUAUAAAAg :| || | | |||||||| gguaaUGCAUAUAAAGAUAUUUUc 2 19 488 511 [dm3:3R:13215190-13215213:+] 0.5385 153 7 -10.59 -0.6461 MIMAT0011791 dme-miR-2283 42089 CG5319 uaacagcAUAAG--UACUAUAAAAg ||| | | ||||||| uacgauaUAUACCAAACAUAUUUUu 2 17 735 759 [dm3:3R:13215437-13215461:+] 0.5385 143 7 -4.90 -0.4034 MIMAT0012196 dme-miR-2489 42089 CG5319 ugacguuUAUGUUGUAUGUUAu | |||| ||||| | uuuaaucAAACAAAAUACAUUa 2 16 1246 1267 [dm3:3R:13215948-13215969:+] 0.6026 127 0 -7.41 -0.1096 MIMAT0012199 dme-miR-2492 42089 CG5319 aaacuuucgagagcUGUUUUGUa |||||||| accaacacaacaauACAAAACAc 2 10 72 94 [dm3:3R:13214774-13214796:+] 0.6087 145 7 -6.82 -0.8414 MIMAT0012209 dme-miR-2497 42089 CG5319 gacGUUUGUAACAUUUA-CAACa :|::| ||| ||| |||| gaaUAGGCCAUGUUAAUAGUUGc 2 20 833 855 [dm3:3R:13215535-13215557:+] 0.5385 123 0 -10.53 -0.7563 MIMAT0012210 dme-miR-2498* 42089 CG5319 guuUUUAUUCGUAUUGU-CGGAAAu | ||| || ||:| |||||| cauACAUA--CACAAUAUGCCUUUc 2 22 1023 1045 [dm3:3R:13215725-13215747:+] 0.5312 126 6 -10.39 -0.8922 MIMAT0012214 dme-miR-2500* 42089 CG5319 ccAUAACAUAUACACACAAGG-AAUg |||| :|| || |||||| ||| ucUAUUUCGUA-GU-UGUUCCAUUAu 2 24 993 1016 [dm3:3R:13215695-13215718:+] 0.5390 131 0 -11.03 -0.8032 MIMAT0012215 dme-miR-2500 42089 CG5319 gacUCCAGGUGUGUGUUUUAGg || | || |:|||||||| aaaAGAUACAGAUACAAAAUCg 2 20 104 125 [dm3:3R:13214806-13214827:+] 0.6087 167 7 -14.69 -0.8656 MIMAT0012215 dme-miR-2500 42089 CG5319 gaCUCCAGGUGUGUGUUUUAGg ||| | :|:||||||||| acGAGAU--GCGCACAAAAUCc 2 21 928 947 [dm3:3R:13215630-13215649:+] 0.5082 161 7 -22.70 -0.1217 MIMAT0012215 dme-miR-2500 42089 CG5319 gacuccagGUGUGUGUUUUAGg :|: : ||||||| uauaaagaUAUUUUCAAAAUCg 2 15 497 518 [dm3:3R:13215199-13215220:+] 0.5385 142 7 -7.24 -1.0303 MIMAT0012215 dme-miR-2500 42089 CG5319 gacuccagguGUGUGUUUUAgg || ||||||| guacuuuaauCAAACAAAAUac 3 13 1242 1263 [dm3:3R:13215944-13215965:+] 0.6026 132 0 -7.60 -0.1686 MIMAT0012216 dme-miR-2501 42089 CG5319 aaucggguccgUGAG-GUUUGAAUg |||| ||||||| auuaguaguugACUCGAAAACUUAa 2 14 559 583 [dm3:3R:13215261-13215285:+] 0.5385 148 7 -14.02 -0.8678 MIMAT0000114 dme-miR-9a 42089 CG5319 agUAUGUCGAUCUAUUGGUUUcu |||| | || || |||||| uaAUAC-GAUAUAU-ACCAAAca 3 22 732 752 [dm3:3R:13215434-13215454:+] 0.5385 141 0 -8.24 -0.1541 MIMAT0012531 dme-miR-10-3p 42089 CG5319 uuUGGAGAGAUCUUG----GCUUAAAc || |: :|||| : ||||||| auACAUUAUUAGAUUUUUGCGAAUUUa 2 22 1260 1286 [dm3:3R:13215962-13215988:+] 0.6026 148 7 -9.25 -1.2479 MIMAT0012531 dme-miR-10-3p 42089 CG5319 uuuggagagAUCUUGGCUUAAAc || :| ||||||| auaguugcaUACGA-CGAAUUUg 2 15 848 869 [dm3:3R:13215550-13215571:+] 0.5385 144 7 -12.05 -0.4500 MIMAT0000319 dme-miR-263a 42089 CG5319 cacuUAAGAAGGUCACGGUAAUug || ||:| | |||||| gauuAUGAAUCUAUUACCAUUAug 3 21 1219 1242 [dm3:3R:13215921-13215944:+] 0.6026 136 0 -10.11 -0.1978 MIMAT0000335 dme-miR-219 42089 CG5319 guucuuAACGCAAAC----CUGUUAGu |||| |||| ||||||: gauuuuUUGCUUUUGAUAAGACAAUUa 2 18 1148 1174 [dm3:3R:13215850-13215876:+] 0.5924 140 0 -12.41 -0.1856 MIMAT0000346 dme-miR-282 42089 CG5319 ugUCUGUUUCGGAUCAUCUC--CG-AUCUAa | |:::| ||| ||||| || ||||| ucAUAUGGACGCUAAUAGAGACGCAUAGAUa 2 27 616 646 [dm3:3R:13215318-13215348:+] 0.5385 137 0 -17.43 -0.6505 MIMAT0000347 dme-miR-283 42089 CG5319 ucuuaauggucgaCUAUAAAu ||||||| uaaugcauauaaaGAUAUUUu 2 9 490 510 [dm3:3R:13215192-13215212:+] 0.5385 140 7 -5.17 -0.9351 MIMAT0000392 dme-miR-9c 42089 CG5319 agAUGUCGAUCUUAUGGUUUcu ||| | || |||||||| aaUAC-GAUA-UAUACCAAAca 3 21 733 752 [dm3:3R:13215435-13215454:+] 0.5385 136 0 -9.80 -0.1660 MIMAT0000395 dme-miR-9b 42089 CG5319 guaUGUCGAUU---UUA---GUGGUUUcu | |||||| :|| :|||||| acaAAAGCUAAUACGAUAUAUACCAAAca 3 21 724 752 [dm3:3R:13215426-13215454:+] 0.5385 130 0 -11.67 -0.1660 MIMAT0000399 dme-miR-308 42089 CG5319 gaGUGUCAU-AUUAGGACAC-UAa | | ||| | ||||||| || agCCCCGUACUUCUCCUGUGCAUu 2 21 1057 1080 [dm3:3R:13215759-13215782:+] 0.5567 123 0 -12.48 -0.4815 MIMAT0000407 dme-miR-315 42089 CG5319 cgaAAGACUCGUUGUUAGUUUu || || | :||||||| ccaUUAUGUACUUUAAUCAAAc 2 20 1235 1256 [dm3:3R:13215937-13215958:+] 0.6026 151 7 -7.27 -1.1681 MIMAT0000407 dme-miR-315 42089 CG5319 cgaaagacucGUUGUUA-GUUUu ||||||| |||| gagaccaacaCAACAAUACAAAa 2 13 69 91 [dm3:3R:13214771-13214793:+] 0.6087 124 0 -11.89 -0.8602 MIMAT0000413 dme-miR-iab-4-3p 42089 CG5319 caAUGCAUAUG-ACUUCCAUAUGGc ||: ||||: | | |||||| uaUAUAUAUAUAUAUAUAUAUACCa 2 23 186 210 [dm3:3R:13214888-13214912:+] 0.5866 129 6 -12.05 -0.2337 MIMAT0000413 dme-miR-iab-4-3p 42089 CG5319 caaugcauaugacuuccAUAUGGc |||||| caaaagcuaauacgauaUAUACCa 2 8 725 748 [dm3:3R:13215427-13215450:+] 0.5385 120 6 -9.95 -0.1107 MIMAT0005468 dme-miR-193 42089 CG5319 caaCCCUGAAUCAUCCGGU-CAu |||| | ||||||| || cgaGGGA--GAAUAGGCCAUGUu 2 20 826 846 [dm3:3R:13215528-13215548:+] 0.5385 120 0 -18.88 -0.6224 MIMAT0005471 dme-miR-958 42089 CG5319 uuuCAU-CUUAUCUUCUUAGAgu ||| :|| | |||||| ccuGUAUUGAU-UAUGAAUCUau 3 20 1211 1232 [dm3:3R:13215913-13215934:+] 0.6026 124 0 -5.92 -0.1061 MIMAT0005472 dme-miR-375 42089 CG5319 auUGAAUUCGGUUUGCUUGUUu |: || ::|| | ||||| uuAUGUACUUUAAUCAAACAAa 2 21 1238 1259 [dm3:3R:13215940-13215961:+] 0.6026 124 0 -7.81 -0.1068 MIMAT0005472 dme-miR-375 42089 CG5319 auugaauuCGGUUUGC-UUGUUu ||::|:|| ||||| uauagccuGCUGAGCGCAACAAu 2 15 1083 1105 [dm3:3R:13215785-13215807:+] 0.5822 122 0 -14.23 -0.3252 MIMAT0005478 dme-miR-964 42089 CG5319 uuCAAUUCGAGGGGAUAAGAUu ||||| || ||||||| gcGUUAA---CCAAUAUUCUAa 2 21 684 702 [dm3:3R:13215386-13215404:+] 0.5385 152 7 -13.41 -0.9791 MIMAT0005493 dme-miR-977 42089 CG5319 aaucuguugcacuUAUAGAGu ||||||| uaguuguuccauuAUAUCUCu 2 9 1002 1022 [dm3:3R:13215704-13215724:+] 0.5312 140 7 -8.37 -0.9174 MIMAT0005493 dme-miR-977 42089 CG5319 aaucUGU-UGCACUUAUAGAgu |:| || | |||||| uuuuAUAUACAU--AUAUCUau 3 18 1179 1198 [dm3:3R:13215881-13215900:+] 0.6026 121 0 -4.17 -0.1578 MIMAT0005493 dme-miR-977 42089 CG5319 aaucuguUGCACUUA-UAGAGu ||||| || ||||| ugucaguACGUG-AUCAUCUCa 2 15 328 348 [dm3:3R:13215030-13215050:+] 0.5177 120 0 -18.70 -1.0484 MIMAT0005501 dme-miR-927 42089 CG5319 ccauuUCGCA--UCCU--UAAGAUUu ||||| | | ||||||| aagcuAGCGUUAACCAAUAUUCUAAa 2 18 678 703 [dm3:3R:13215380-13215405:+] 0.5385 143 7 -12.88 -0.9868 MIMAT0005504 dme-miR-987 42089 CG5319 guAGUUAGGUCUGAUAAAUGAAAu || ||: |:||| |||||| aaUCUAUUACCAUUAUGUACUUUa 2 23 1226 1249 [dm3:3R:13215928-13215951:+] 0.6026 138 6 -11.69 -0.2534 MIMAT0005516 dme-miR-252 42089 CG5319 gaggacgccGUGAU-CAUGAAuc ||:|| |||||| aucuauuacCAUUAUGUACUUua 3 14 1227 1249 [dm3:3R:13215929-13215951:+] 0.6026 132 0 -11.65 -0.2086 MIMAT0005519 dme-miR-999 42089 CG5319 ucUGUG-UCAGAAUGUCAAUUGu || | |||: |||||||| aaACCCAAGUUAACCAGUUAACg 2 21 870 892 [dm3:3R:13215572-13215594:+] 0.5166 155 7 -14.62 -0.3668 MIMAT0005520 dme-miR-1000 42089 CG5319 ugACG-ACACUGUCCUGUUAua ||| | |||:| |||||| uuUGCUUUUGAUAAGACAAUua 3 20 1153 1174 [dm3:3R:13215855-13215876:+] 0.5924 146 0 -15.86 -0.1821 MIMAT0005019 dme-miR-1006 42089 CG5319 gauACUUAUUCUUUAGCUUAAAu || ||| || ||||||| aguUGCAUACGA---CGAAUUUg 2 21 850 869 [dm3:3R:13215552-13215571:+] 0.5385 152 7 -8.85 -0.4369 MIMAT0005019 dme-miR-1006 42089 CG5319 gauacuUAUUCUUUA---GCUUAAAu || ||| | ||||||| uacauuAUUAGAUUUUUGCGAAUUUa 2 18 1261 1286 [dm3:3R:13215963-13215988:+] 0.6026 144 7 -9.89 -1.2479 MIMAT0005024 dme-miR-1011 42089 CG5319 gaCGCUCGCUAAACUUGGUUAUu || |||| || |||||||| aaGCUAGCG--UU-AACCAAUAu 2 22 678 697 [dm3:3R:13215380-13215399:+] 0.5385 160 7 -16.36 -0.7588 MIMAT0005027 dme-miR-1014 42089 CG5319 gacguUUACUUUUACUUAAAa | ||| |||||| | ccuguAUUGAUUAUGAAUCUa 2 17 1211 1231 [dm3:3R:13215913-13215933:+] 0.6026 124 0 -12.97 -0.1134 MIMAT0005027 dme-miR-1014 42089 CG5319 gacguuuacuuuuaCUUAAAa |||||| uauuagauuuuugcGAAUUUa 2 8 1266 1286 [dm3:3R:13215968-13215988:+] 0.6026 120 6 -5.08 -0.3361

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score lute RAID00021666 dme-miR-958-3p miRNA MIMAT0005471 lute mRNA 42089 Prediction 0.1828 lute RAID00050550 dme-miR-308-3p miRNA MIMAT0000399 lute mRNA 42089 Prediction 0.1828 lute RAID00138970 dme-miR-282-5p miRNA MIMAT0000346 lute mRNA 42089 Prediction 0.1828 lute RAID00152358 dme-miR-193-3p miRNA MIMAT0005468 lute mRNA 42089 Prediction 0.1828 lute RAID00222760 dme-miR-iab-4-3p miRNA MIMAT0000413 lute mRNA 42089 Prediction 0.1828 lute RAID00298333 dme-miR-1-3p miRNA MIMAT0000105 lute mRNA 42089 Prediction 0.1828 lute RAID00320093 dme-miR-375-3p miRNA MIMAT0005472 lute mRNA 42089 Prediction 0.1828 lute RAID00697405 dme-miR-1014-3p miRNA MIMAT0005027 lute mRNA 42089 Prediction 0.2202 lute RAID00757130 dme-miR-311-3p miRNA MIMAT0000403 lute mRNA 42089 Prediction 0.1828 lute RAID00823779 dme-miR-1006-3p miRNA MIMAT0005019 lute mRNA 42089 Prediction 0.2202 lute RAID00840141 dme-miR-987-5p miRNA MIMAT0005504 lute mRNA 42089 Prediction 0.2202 lute RAID00966697 dme-miR-316-5p miRNA MIMAT0000408 lute mRNA 42089 Prediction 0.1828 lute RAID01118133 dme-miR-964-5p miRNA MIMAT0005478 lute mRNA 42089 Prediction 0.2202 lute RAID01134726 dme-miR-92a-3p miRNA MIMAT0000334 lute mRNA 42089 Prediction 0.1828 lute RAID01254701 dme-miR-210-3p miRNA MIMAT0000355 lute mRNA 42089 Prediction 0.1828 lute RAID01351725 dme-miR-999-3p miRNA MIMAT0005519 lute mRNA 42089 Prediction 0.2202 lute RAID01618845 dme-miR-310-3p miRNA MIMAT0000402 lute mRNA 42089 Prediction 0.1828 lute RAID01640335 dme-miR-977-3p miRNA MIMAT0005493 lute mRNA 42089 Prediction 0.2202 lute RAID01643335 dme-miR-9b-5p miRNA MIMAT0000395 lute mRNA 42089 Prediction 0.1828 lute RAID01689021 dme-miR-285-3p miRNA MIMAT0000356 lute mRNA 42089 Prediction 0.1828 lute RAID01829924 dme-miR-315-5p miRNA MIMAT0000407 lute mRNA 42089 Prediction 0.2202 lute RAID01951219 dme-miR-963-5p miRNA MIMAT0005477 lute mRNA 42089 Prediction 0.1828 lute RAID02080571 dme-miR-92b-3p miRNA MIMAT0000358 lute mRNA 42089 Prediction 0.1828 lute RAID02177155 dme-miR-998-3p miRNA MIMAT0005518 lute mRNA 42089 Prediction 0.1828 lute RAID02307955 dme-miR-263a-5p miRNA MIMAT0000319 lute mRNA 42089 Prediction 0.1828 lute RAID02697113 dme-miR-252-5p miRNA MIMAT0005516 lute mRNA 42089 Prediction 0.1828 lute RAID02850363 dme-miR-991-3p miRNA MIMAT0005509 lute mRNA 42089 Prediction 0.1828 lute RAID02890475 dme-miR-1000-5p miRNA MIMAT0005520 lute mRNA 42089 Prediction 0.1828 lute RAID03080368 dme-miR-9c-5p miRNA MIMAT0000392 lute mRNA 42089 Prediction 0.1828 lute RAID03122580 dme-miR-313-3p miRNA MIMAT0000405 lute mRNA 42089 Prediction 0.1828 lute RAID03219842 dme-miR-1011-3p miRNA MIMAT0005024 lute mRNA 42089 Prediction 0.2202 lute RAID03260067 dme-miR-995-3p miRNA MIMAT0005514 lute mRNA 42089 Prediction 0.1828 lute RAID03351228 dme-miR-10-3p miRNA MIMAT0012531 lute mRNA 42089 Prediction 0.1828 lute RAID03372959 dme-miR-283-5p miRNA MIMAT0000347 lute mRNA 42089 Prediction 0.1828 lute RAID03461870 dme-miR-956-3p miRNA MIMAT0005469 lute mRNA 42089 Prediction 0.1828 lute RAID03520325 dme-miR-972-3p miRNA MIMAT0005488 lute mRNA 42089 Prediction 0.1828 lute RAID03663294 dme-miR-988-3p miRNA MIMAT0005505 lute mRNA 42089 Prediction 0.1828 lute RAID03680778 dme-miR-961-5p miRNA MIMAT0005475 lute mRNA 42089 Prediction 0.1828 lute RAID03712421 dme-miR-927-5p miRNA MIMAT0005501 lute mRNA 42089 Prediction 0.2202 lute RAID03772610 dme-miR-219-5p miRNA MIMAT0000335 lute mRNA 42089 Prediction 0.2202 lute RAID03794284 dme-miR-9a-5p miRNA MIMAT0000114 lute mRNA 42089 Prediction 0.1828 lute RAID03811354 dme-mir-iab-4 miRNA MI0000432 lute mRNA 42089 Prediction 0.1828 lute RAID03947555 dme-miR-312-3p miRNA MIMAT0000404 lute mRNA 42089 Prediction 0.1828