DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 38144 CG9139 auaGUAAAGUAUACGUUGC-----AUUUAUGu | || || | :||| |||||:| uagCUUUACAGAAAGGACGUUUAAUAAAUGCa 2 25 127 158 [dm3:3L:1298455-1298486:+] 0.5643 127 0 -11.20 -0.2097 MIMAT0000364 dme-miR-289 38144 CG9139 ucagcguccgaggugaauuUAUAAAu |||||| ucaauucaaauuucugcacAUAUUUa 2 8 84 109 [dm3:3L:1298412-1298437:+] 0.5497 120 6 -8.49 -0.2087 MIMAT0000364 dme-miR-289 38144 CG9139 ucagcguccgaggugaauuUAUAAAu |||||| gcacauauuuauuuguaccAUAUUUa 2 8 99 124 [dm3:3L:1298427-1298452:+] 0.5497 120 6 -9.74 -0.1587 MIMAT0005488 dme-miR-972 38144 CG9139 cggaUUUAUAAGCAUAACAUGu | |||||: |||||| cugcACAUAUUU-AUUUGUACc 2 19 97 117 [dm3:3L:1298425-1298445:+] 0.5497 124 6 -8.06 -0.2902 MIMAT0005021 dme-miR-1008 38144 CG9139 acAUUUGUGUUUUUCGACACu |:||: | : ||||||| acUGAAU-CCUGCAGCUGUGu 2 20 19 38 [dm3:3L:1298347-1298366:+] 0.5248 145 7 -12.34 -0.4797 MIMAT0011784 dme-miR-2279* 38144 CG9139 uuAAAGUGUGUGUCUAUAAAUu |||| ::||| ||||||| aaUUUC-UGCAC--AUAUUUAu 2 21 92 110 [dm3:3L:1298420-1298438:+] 0.5497 155 7 -11.84 -0.8427 MIMAT0011784 dme-miR-2279* 38144 CG9139 uuaAAGUGUGUGU-CUAUAAAUu ||:|: :::| ||||||| auaUUUAUUUGUACCAUAUUUAa 2 20 103 125 [dm3:3L:1298431-1298453:+] 0.5643 150 7 -7.80 -0.9926 MIMAT0011787 dme-miR-2280* 38144 CG9139 agUCAAUCGAACCUUCAUUUAa || | |: || | |||||| gcAGCU-GUGUGAAUGUAAAUa 2 21 29 49 [dm3:3L:1298357-1298377:+] 0.5351 126 6 -11.07 -0.1424 MIMAT0012197 dme-miR-2490 38144 CG9139 aacguuggacgaaauaGCGAAGu |||||| auuguaguuagcccaaCGCUUCa 2 8 64 86 [dm3:3L:1298392-1298414:+] 0.5351 120 6 -18.60 -0.1584 MIMAT0000109 dme-miR-4 38144 CG9139 aguUACCAACAGAUCGAAAUa || || ||||||||| accAUAUUUAACUAGCUUUAc 2 19 115 135 [dm3:3L:1298443-1298463:+] 0.5643 158 7 -11.33 -1.0545 MIMAT0000347 dme-miR-283 38144 CG9139 ucUUAAUGGUCGACUAUAAAu |||| :| || |||||| caAAUU-UCUGCACAUAUUUa 2 20 90 109 [dm3:3L:1298418-1298437:+] 0.5497 129 6 -6.86 -0.2087 MIMAT0000347 dme-miR-283 38144 CG9139 ucuuaauggucgacUAUAAAu |||||| uauuuauuuguaccAUAUUUa 2 8 104 124 [dm3:3L:1298432-1298452:+] 0.5643 120 6 -6.32 -0.1670 MIMAT0000352 dme-miR-79 38144 CG9139 uacgaaaccAUUAGAUCGAAAu ||| |||||||| uaccauauuUAA-CUAGCUUUa 2 14 114 134 [dm3:3L:1298442-1298462:+] 0.5643 151 7 -12.27 -1.1462 MIMAT0005030 dme-miR-1017 38144 CG9139 ccuacucaaacccaucUCGAAAg |||||| uguaccauauuuaacuAGCUUUa 2 8 112 134 [dm3:3L:1298440-1298462:+] 0.5643 120 6 -4.91 -0.1336

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rabex-5 RAID00225995 dme-miR-1017-3p miRNA MIMAT0005030 Rabex-5 mRNA 38144 Prediction 0.1828 Rabex-5 RAID00757062 dme-miR-79-3p miRNA MIMAT0000352 Rabex-5 mRNA 38144 Prediction 0.1828 Rabex-5 RAID02841115 dme-miR-4-3p miRNA MIMAT0000109 Rabex-5 mRNA 38144 Prediction 0.1828 Rabex-5 RAID03577667 dme-miR-283-5p miRNA MIMAT0000347 Rabex-5 mRNA 38144 Prediction 0.1828