DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36150 CG6751 auaguaAAGUAUACGUUGCAUUUAUgu ||:||||| : |||||| auaugcUUUAUAUGACUUUUAAAUAaa 3 22 32 58 [dm3:2R:6764753-6764779:+] 0.3836 145 0 -9.91 -0.1410 MIMAT0005481 dme-miR-966 36150 CG6751 ggugugucgggugUUGGGUGu :|||||| uaacucuugaauaGACCCACg 2 9 276 296 [dm3:2R:6764997-6765017:+] 0.7402 124 6 -14.85 -0.1064 MIMAT0005025 dme-miR-1012 36150 CG6751 gauaccccuuUUAGAAACUGAuu ||| |||||| uaagaaccuuAAUGAUUGACUuu 3 14 72 94 [dm3:2R:6764793-6764815:+] 0.3874 129 0 -6.91 -0.1150 MIMAT0005026 dme-miR-1013 36150 CG6751 gcuCAAGCCGUA-UGAAAAUa | |: :|| ||||||| uauGCUUUAUAUGACUUUUAa 2 18 33 53 [dm3:2R:6764754-6764774:+] 0.3836 144 7 -5.40 -1.0237 MIMAT0005026 dme-miR-1013 36150 CG6751 gcucaagccGUAUGAAAAUa :| ||||||| uaugcacuuUACACUUUUAu 2 12 130 149 [dm3:2R:6764851-6764870:+] 0.4048 143 7 -6.49 -0.3481 MIMAT0005026 dme-miR-1013 36150 CG6751 gcucaagccguaUGAAAAUa ||||||| ccuuaaugauugACUUUUAu 2 9 78 97 [dm3:2R:6764799-6764818:+] 0.3874 140 7 -6.95 -0.9151 MIMAT0005029 dme-miR-1016 36150 CG6751 gaUUCAUACCUCUCUCCA-CUu ||||| | | ||||| || gaAAGUACGCA-UGAGGUAGAc 2 20 356 376 [dm3:2R:6765077-6765097:+] 0.7402 121 0 -10.84 -0.4613 MIMAT0012199 dme-miR-2492 36150 CG6751 aaacuuucgagagcUGUUUUGUa |||||||| gucacaaacgaaauACAAAACAu 2 10 185 207 [dm3:2R:6764906-6764928:+] 0.4142 145 7 -10.21 -0.8819 MIMAT0012208 dme-miR-2497* 36150 CG6751 uuguuGAUGUAAAACGUUACGAAUg :|||| ||| ||||||| gcacuUUACACUUU--UAUGCUUAa 2 21 133 155 [dm3:2R:6764854-6764876:+] 0.4048 157 7 -12.52 -1.0582 MIMAT0012214 dme-miR-2500* 36150 CG6751 ccauaacauauaCACACAAGGAAUg | | ||||||| ccuaaacauuccGAGCAUUCCUUAa 2 14 212 236 [dm3:2R:6764933-6764957:+] 0.4142 141 7 -7.51 -0.9008 MIMAT0000105 dme-miR-1 36150 CG6751 gagGU-AUGAAGAAAUGUAAGGu || || | || ||||||| aaaCAUUAAUCCUAAACAUUCCg 2 20 202 224 [dm3:2R:6764923-6764945:+] 0.4142 154 7 -13.65 -0.7788 MIMAT0000109 dme-miR-4 36150 CG6751 aguUACCAACAGAU-CGAAAUa || ||| || |||||| uuuAUCUGUGUAUAUGCUUUAu 2 19 21 42 [dm3:2R:6764742-6764763:+] 0.3799 122 6 -8.45 -0.8650 MIMAT0000348 dme-miR-284 36150 CG6751 guuaacgacCUU--AGUUCAACGACUGAAGu ||| |:|| | :||||||: uauauauaaGAACCUUAA-UGAUUGACUUUu 2 21 66 95 [dm3:2R:6764787-6764816:+] 0.3874 133 0 -9.55 -0.1284 MIMAT0000348 dme-miR-284 36150 CG6751 guuaacGAC-CUUA-GUUCAACG-ACUGAAGu ||| | || :: || : ||||||: auuuauCUGUGUAUAUGCUUUAUAUGACUUUu 2 24 20 51 [dm3:2R:6764741-6764772:+] 0.3836 128 0 -10.00 -0.1046 MIMAT0000355 dme-miR-210 36150 CG6751 aucggcgaCAGUGUGCGUGUu | | |||||||| cuugaauaGACCCACGCACAu 2 14 281 301 [dm3:2R:6765002-6765022:+] 0.7402 149 7 -14.67 -0.7732 MIMAT0000413 dme-miR-iab-4-3p 36150 CG6751 caaugcauAUGACUUCCAUAUGGc ||| | ||||||| cuuaacacUACAUUACGUAUACCa 2 17 232 255 [dm3:2R:6764953-6764976:+] 0.4142 148 7 -11.99 -0.9130 MIMAT0005476 dme-miR-962 36150 CG6751 cugucguaguuaaagagaUGGAAUa |||||| uaugaauuauauauaagaACCUUAa 2 8 59 83 [dm3:2R:6764780-6764804:+] 0.3874 120 6 -5.74 -0.1667 MIMAT0005513 dme-miR-994 36150 CG6751 uaGUGCCGAUGAUAAAGGAAUc ||: | | | ||||||| aaCAUUCCGAGCA-UUCCUUAa 2 21 216 236 [dm3:2R:6764937-6764957:+] 0.4142 142 7 -8.66 -0.8746 MIMAT0005019 dme-miR-1006 36150 CG6751 gauACUUAUUCUUUAGCU-UAAAu | || || |||||| |||| gcuUAAACAACUAAUCGACAUUUc 2 21 150 173 [dm3:2R:6764871-6764894:+] 0.4222 132 0 -6.63 -0.3134 MIMAT0005027 dme-miR-1014 36150 CG6751 gacGUUUACUUUUACUUAAaa :|||| || ||||||| uuuUAAAUAAAUAUGAAUUau 3 19 48 68 [dm3:2R:6764769-6764789:+] 0.3874 150 0 -6.47 -0.1170

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score nclb RAID00223211 dme-miR-1013-3p miRNA MIMAT0005026 nclb mRNA 36150 Prediction 0.1828 nclb RAID00837099 dme-miR-284-3p miRNA MIMAT0000348 nclb mRNA 36150 Prediction 0.1828 nclb RAID01541738 dme-miR-962-5p miRNA MIMAT0005476 nclb mRNA 36150 Prediction 0.2202 nclb RAID02048408 dme-miR-4-3p miRNA MIMAT0000109 nclb mRNA 36150 Prediction 0.1828 nclb RAID02438866 dme-miR-274-5p miRNA MIMAT0000332 nclb mRNA 36150 Prediction 0.1828 nclb RAID02570468 dme-mir-iab-4 miRNA MI0000432 nclb mRNA 36150 Prediction 0.1828 nclb RAID03037507 dme-miR-iab-4-3p miRNA MIMAT0000413 nclb mRNA 36150 Prediction 0.1828 nclb RAID03106982 dme-miR-1-3p miRNA MIMAT0000105 nclb mRNA 36150 Prediction 0.2202 nclb RAID03234546 dme-miR-994-5p miRNA MIMAT0005513 nclb mRNA 36150 Prediction 0.2202 nclb RAID03463138 dme-miR-1014-3p miRNA MIMAT0005027 nclb mRNA 36150 Prediction 0.1828 nclb RAID03608335 dme-miR-1006-3p miRNA MIMAT0005019 nclb mRNA 36150 Prediction 0.1828 nclb RAID03911697 dme-miR-5-5p miRNA MIMAT0000110 nclb mRNA 36150 Prediction 0.1828 nclb RAID04062203 dme-miR-210-3p miRNA MIMAT0000355 nclb mRNA 36150 Prediction 0.1828