DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 41836 Caf1 auaGUAAAGUAUACGUUGCAU-UUAUGu ||| | | || | || ||||| -agCAUCUGUUCCGCCUCCUAUAAUACa 2 25 1 27 [dm3:3R:11053069-11053095:+] 0.5520 120 0 -9.56 -0.7633 MIMAT0000344 dme-miR-281-1* 41836 Caf1 ugacagcugccugUCGAGAGaa ||||||| caaaauuuaauuaAGCUCUCau 3 10 143 164 [dm3:3R:11053211-11053232:+] 0.4773 125 0 -11.25 -0.1297 MIMAT0000364 dme-miR-289 41836 Caf1 ucagcguccgAGGUGAAUUUAUAAAu | :|:||| |||||| uuaauuuauaUAUAUUUACAUAUUUu 2 17 111 136 [dm3:3R:11053179-11053204:+] 0.4773 132 6 -6.72 -0.3869 MIMAT0005488 dme-miR-972 41836 Caf1 cggauuuauaagcaUAACAUGu ||||||| ucauuugucagcagAUUGUACa 2 9 161 182 [dm3:3R:11053229-11053250:+] 0.4773 140 7 -11.35 -0.9129 MIMAT0005026 dme-miR-1013 41836 Caf1 gcucaagccGUAUGAAAAUa ||||:||||| auauauuuaCAUAUUUUUAa 2 12 120 139 [dm3:3R:11053188-11053207:+] 0.4773 139 0 -9.24 -0.1030 MIMAT0011784 dme-miR-2279* 41836 Caf1 uuAAAGUGUGUGUCUAUAAAUu ||| |: :|:| ||||||| auUUUAAUUUAUAUAUAUUUAc 2 21 108 129 [dm3:3R:11053176-11053197:+] 0.4773 164 7 -7.69 -1.2232 MIMAT0011791 dme-miR-2283 41836 Caf1 uaacagcAUAAGUACUAUAAAAg ||||:| ||||||| uuauauaUAUUUA-CAUAUUUUu 2 17 116 137 [dm3:3R:11053184-11053205:+] 0.4773 154 7 -5.67 -1.1494 MIMAT0011791 dme-miR-2283 41836 Caf1 uaacagcaUAAGUA-CUAUAAAag |||:|| |||||| ucauuuuaAUUUAUAUAUAUUUac 3 16 106 129 [dm3:3R:11053174-11053197:+] 0.4773 134 0 -3.93 -0.2763 MIMAT0012196 dme-miR-2489 41836 Caf1 ugACGUUUAUGUUGUAUGUUAu ||: |: | | ::|||||| uuUGUCAGCAGAUUGUACAAUc 2 21 164 185 [dm3:3R:11053232-11053253:+] 0.4773 140 6 -9.67 -0.1405 MIMAT0012199 dme-miR-2492 41836 Caf1 aaacuuucgagagcugUUUUGUa |||||| uauuuacauauuuuuaAAAACAa 2 8 123 145 [dm3:3R:11053191-11053213:+] 0.4773 120 6 -4.36 -0.5678 MIMAT0012201 dme-miR-2493 41836 Caf1 ugCGGAGCGUGUUUAUGUGUGcc ||||| :|: ||||||||| ccGCCUCCUAU-AAUACACACca 3 22 11 32 [dm3:3R:11053079-11053100:+] 0.5520 155 0 -24.68 -0.2610 MIMAT0012207 dme-miR-2496 41836 Caf1 auACGCACACACUCACGGGGCg ||: | || |||||||| aaUGU-UUUGGCCGUGCCCCGu 2 21 52 72 [dm3:3R:11053120-11053140:+] 0.4554 150 7 -21.98 -0.1527 MIMAT0012215 dme-miR-2500 41836 Caf1 gacuccAGGUGUGUGUUUUAGg |::| | |||||||: cauauuUUUAAAAACAAAAUUu 2 17 129 150 [dm3:3R:11053197-11053218:+] 0.4773 140 0 -7.25 -0.2432 MIMAT0012531 dme-miR-10-3p 41836 Caf1 uuuggaGAGAUCUUG---GCUUAAAc :| || ||: :|||||| agcagaUUGUACAAUCUAUGAAUUUu 2 18 170 195 [dm3:3R:11053238-11053263:+] 0.4773 128 6 -8.61 -0.1332 MIMAT0000347 dme-miR-283 41836 Caf1 ucuuaauggucgacUAUAAAu |||||| auuuuaauuuauauAUAUUUa 2 8 108 128 [dm3:3R:11053176-11053196:+] 0.4773 120 6 -2.75 -0.3426 MIMAT0000347 dme-miR-283 41836 Caf1 ucuuaauggucgacUAUAAAu |||||| uuauauauauuuacAUAUUUu 2 8 116 136 [dm3:3R:11053184-11053204:+] 0.4773 120 6 -2.17 -0.3869 MIMAT0000349 dme-miR-281-2* 41836 Caf1 ugacagcugccuaUCGAGAGaa ||||||| caaaauuuaauuaAGCUCUCau 3 10 143 164 [dm3:3R:11053211-11053232:+] 0.4773 125 0 -10.43 -0.1297 MIMAT0005467 dme-miR-190 41836 Caf1 guUGGUUCU-UAUAGUUUGUAUAGa |:: | | ||||: ||||||: uaAUUUAUAUAUAUU-UACAUAUUu 2 23 112 135 [dm3:3R:11053180-11053203:+] 0.4773 135 0 -9.28 -0.3444 MIMAT0005487 dme-miR-971 41836 Caf1 agugacauucuucauUGUGGUu |||||| cgccuccuauaauacACACCAa 2 8 12 33 [dm3:3R:11053080-11053101:+] 0.5520 120 6 -10.21 -0.2708 MIMAT0005019 dme-miR-1006 41836 Caf1 gauACUUAUUCUUUAGCUUAAAu || | || | :|||||| gauUGUACAAUCUA-UGAAUUUu 2 21 174 195 [dm3:3R:11053242-11053263:+] 0.4773 130 6 -7.65 -0.1222 MIMAT0005027 dme-miR-1014 41836 Caf1 gaCGUUU-AC-U-UU---UACUUAAAa |||:| || | || |||||||| caGCAGAUUGUACAAUCUAUGAAUUUu 2 20 169 195 [dm3:3R:11053237-11053263:+] 0.4773 147 7 -11.36 -1.1288