DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 41704 rdx gccccgcUCUCU-UACUAUUcc | :|| ||||||| uaaugauACGGAUAUGAUAAug 3 15 849 870 [dm3:3R:9794038-9794059:-] 0.6734 129 0 -11.51 -0.1477 MIMAT0000330 dme-miR-184* 41704 rdx gccccgcuCUC-UUACUAUUCc ||| ||||||| | gaguaaauGAGUAAUGAUACGg 2 14 838 859 [dm3:3R:9794049-9794070:-] 0.6734 124 0 -14.37 -0.1051 MIMAT0000330 dme-miR-184* 41704 rdx gccccgcucucuuACUAUUcc |||||| auuuaauucacuuUGAUAAac 3 9 391 411 [dm3:3R:9794497-9794517:-] 0.5384 120 0 -2.03 -0.1006 MIMAT0000343 dme-miR-280 41704 rdx auaguaaAGUAUACGUUGCAUUUAUGu ||: | ||| ||||||| guaaaaaUCGAAGGCA---UAAAUACa 2 21 657 680 [dm3:3R:9794228-9794251:-] 0.5384 148 7 -11.04 -0.9444 MIMAT0000388 dme-miR-303 41704 rdx uggucaaaggacacUUUGGAUUu |||||||| caacaaaaacaaaaAAACCUAAa 2 10 552 574 [dm3:3R:9794334-9794356:-] 0.5384 145 7 -12.44 -1.3044 MIMAT0005464 dme-miR-iab-4as-3p 41704 rdx auUUGCA-UAUGACUUACAUAGg ||| | || :| |||||||: uaAACUUGAUUUUAAAUGUAUUu 2 21 407 429 [dm3:3R:9794479-9794501:-] 0.5384 147 0 -9.09 -0.1493 MIMAT0005482 dme-miR-967 41704 rdx gcGAAGAGGUCUCCAUAGAga |||:||: | |||||| guCUUUUCU-UAAGUAUCUaa 3 20 1076 1095 [dm3:3R:9793813-9793832:-] 0.5453 137 0 -13.65 -0.1500 MIMAT0005482 dme-miR-967 41704 rdx gcgaAGAGGUCUCCAUAGAga | ||:| | |||||| uaagUAUCUAAAAGUAUCUaa 3 18 1085 1105 [dm3:3R:9793803-9793823:-] 0.5453 137 0 -8.43 -0.2074 MIMAT0005488 dme-miR-972 41704 rdx cggAUUUAUAAGCAUAACAUGu ||| || |: |:|||||| augUAAUUAAUU-UGUUGUACa 2 20 1147 1167 [dm3:3R:9793741-9793761:-] 0.5453 145 6 -10.84 -0.2987 MIMAT0005489 dme-miR-973 41704 rdx uuuuagcUUCAAG-UUG-GUGGUUGgu || | | ||| ||||||| augcaacAACUACAAACACACCAACaa 3 19 8 34 [dm3:3R:9794874-9794900:-] 0.6809 136 0 -14.63 -0.6294 MIMAT0005500 dme-miR-984 41704 rdx uuuAAGGUUGGCAUA-AAUGGAGu | :::|:: || ||||||: auuUGUUGAUUUAAUAUUACCUUa 2 21 431 454 [dm3:3R:9794454-9794477:-] 0.5384 131 0 -9.78 -0.1936 MIMAT0005509 dme-miR-991 41704 rdx ugAAA--GGUUUGAUG-UUGAAAUu ||| ||:|::| : ||||||| ugUUUACCCGAGUUCUAAACUUUAa 2 21 998 1022 [dm3:3R:9793886-9793910:-] 0.3462 154 7 -14.12 -0.7687 MIMAT0005521 dme-miR-1001 41704 rdx acuaggaacccuCAAAUGGGu |||||||| uaaaaauuuauuGUUUACCCg 2 10 987 1007 [dm3:3R:9793901-9793921:-] 0.3462 145 7 -13.26 -0.2969 MIMAT0011787 dme-miR-2280* 41704 rdx agUCAAUCGAACCUUCAUUUAa | | || | :||||||| cuAAUGAG-UAACGAGUAAAUg 2 21 826 846 [dm3:3R:9794062-9794082:-] 0.6734 142 7 -5.47 -0.6773 MIMAT0011787 dme-miR-2280* 41704 rdx agUCAAUCGAACCUUCAUUUaa | ||| || ||||||| uaAAUUAAAUUUAAAGUAAAgu 3 21 624 645 [dm3:3R:9794263-9794284:-] 0.5384 140 0 -4.47 -0.2041 MIMAT0011787 dme-miR-2280* 41704 rdx agucaaucgaaCCUUCAUUUaa | ||||||| aaaacaaaacgGAAAGUAAAau 3 12 603 624 [dm3:3R:9794284-9794305:-] 0.5384 127 0 -6.47 -0.1447 MIMAT0011787 dme-miR-2280* 41704 rdx agucaaucgaaccUUCAUUUaa ||||||| aaguaaaaacuaaAAGUAAAaa 3 10 642 663 [dm3:3R:9794245-9794266:-] 0.5384 125 0 -4.79 -0.1091 MIMAT0011788 dme-miR-2281* 41704 rdx aacguagaCGUCGACGUCUAUUa |||| ||||||| uguuaaacGCAG--ACAGAUAAu 2 16 312 332 [dm3:3R:9794576-9794596:-] 0.5028 144 7 -15.58 -0.5008 MIMAT0011791 dme-miR-2283 41704 rdx uaacAGC-AUAAGUACUAUAAAAg |:| | || | :|||||| aaacUUGAUUUUAAAUGUAUUUUa 2 20 408 431 [dm3:3R:9794477-9794500:-] 0.5384 134 6 -4.19 -0.3590 MIMAT0012198 dme-miR-2491 41704 rdx ucGUUGACGUUUCCGUUGUCGc ||||| ||| ||||||| agCAACUACAAUAACAACAGCa 2 21 69 90 [dm3:3R:9794818-9794839:-] 0.5138 168 7 -21.97 -1.1238 MIMAT0012198 dme-miR-2491 41704 rdx ucGUUG-ACGUU-UCCGUUGUCGc |||| ||| | ||||||| aaCAACAAUCAACAAUCAACAGCa 2 21 108 131 [dm3:3R:9794777-9794800:-] 0.5705 150 7 -14.48 -1.2113 MIMAT0012198 dme-miR-2491 41704 rdx ucGUUGACGUUU---CCGUUGUCGc ||||| |||| ||||| | aaCAACUACAAACACACCAACAACa 2 21 12 36 [dm3:3R:9794872-9794896:-] 0.6809 127 0 -11.82 -0.5384 MIMAT0012199 dme-miR-2492 41704 rdx aaacuUUCGAGAGCUGUUUUGUa || ||: | ||||||| auuuuAAUCUUAAGUCAAAACAc 2 19 490 512 [dm3:3R:9794396-9794418:-] 0.5384 154 7 -8.38 -0.9435 MIMAT0012199 dme-miR-2492 41704 rdx aaacuUUCGAGAGC-UGUUUUGua || :| |:| ||||||| uaauuAAUUUGUUGUACAAAACua 3 19 1150 1173 [dm3:3R:9793735-9793758:-] 0.5453 137 0 -9.01 -0.1791 MIMAT0012199 dme-miR-2492 41704 rdx aaacuuucgagagcUGUUUUGUa |||||||: aaagagcauaaaaaACAAAACGg 2 10 592 614 [dm3:3R:9794294-9794316:-] 0.5384 129 0 -11.12 -0.1973 MIMAT0012199 dme-miR-2492 41704 rdx aaacuuucgagagcugUUUUGUa |||||| agaaacaacaacaacaAAAACAa 2 8 541 563 [dm3:3R:9794345-9794367:-] 0.5384 120 6 -4.76 -0.1781 MIMAT0012201 dme-miR-2493 41704 rdx ugcggagcGUGUUUAUGUGUGcc :|||| |||||| gcaacaacUACAA--ACACACca 3 16 10 30 [dm3:3R:9794878-9794898:-] 0.6809 128 0 -10.23 -0.9257 MIMAT0012214 dme-miR-2500* 41704 rdx ccAU-AACAUAUACA-CACAA-GGAAUg || |||| || | | || ||||| uuUAUUUGUUGAUUUAAUAUUACCUUAu 2 24 428 455 [dm3:3R:9794453-9794480:-] 0.5384 121 0 -7.52 -1.1064 MIMAT0012215 dme-miR-2500 41704 rdx gacuccaGGUGUGU-GUUUUAGg |||| || ||||||| gcacccaCCACCCACCAAAAUCg 2 16 934 956 [dm3:3R:9793952-9793974:-] 0.4214 158 7 -15.24 -0.1399 MIMAT0012215 dme-miR-2500 41704 rdx gacucCAGGUGUGUGUU-UUAGg || ||| |||| |||| aauucGUACACCAACAACAAUCa 2 18 96 118 [dm3:3R:9794790-9794812:-] 0.5422 125 0 -10.89 -0.8209 MIMAT0012215 dme-miR-2500 41704 rdx gacuccaGGUGUGUGUUUUAGg | ||| |||||| | gaaacaaCAACA-ACAAAAACa 2 16 542 562 [dm3:3R:9794346-9794366:-] 0.5384 121 0 -7.02 -0.1076 MIMAT0012216 dme-miR-2501 41704 rdx aaucggguccGUGAG---GUUUGAAUg ||||: :||||||: uaauuuaauuCACUUUGAUAAACUUGa 2 15 389 415 [dm3:3R:9794493-9794519:-] 0.5384 129 0 -11.59 -0.2283 MIMAT0000391 dme-miR-305 41704 rdx gucucguggacuacuuCAUGUUa |||||| auguaauuaauuuguuGUACAAa 2 8 1147 1169 [dm3:3R:9793739-9793761:-] 0.5453 120 6 -8.20 -0.2092 MIMAT0000407 dme-miR-315 41704 rdx cgaaaGACUCGUUGUUA-GUUUu || | ||:||| |||| aaaacCUAAAAAAUAAUGCAAAc 2 18 565 587 [dm3:3R:9794321-9794343:-] 0.5384 121 0 -4.47 -1.2178 MIMAT0000408 dme-miR-316 41704 rdx gcgguCAUUCGCCUUUUUCUgu | || | ||||||| auaauGCAAACAAAAAAAGAgc 3 18 577 598 [dm3:3R:9794310-9794331:-] 0.5384 133 0 -9.19 -0.1351 MIMAT0005472 dme-miR-375 41704 rdx auUGAAUUCGGUUUGCUUGUUu ||| | || || ||||| caACUACAAACACACCAACAAc 2 21 14 35 [dm3:3R:9794873-9794894:-] 0.6809 128 0 -7.07 -0.2168 MIMAT0005476 dme-miR-962 41704 rdx cugucGUAGUUAAA--GAGAUGGAAUa ::|::|||| : :||||||| uuauuUGUUGAUUUAAUAUUACCUUAu 2 21 429 455 [dm3:3R:9794453-9794479:-] 0.5384 155 7 -11.97 -1.1376 MIMAT0005477 dme-miR-963 41704 rdx cuuuGUUGGACUAUAAAUGGAAca ::|::| ||| ||||||| uuguUGAUUUAAUA-UUACCUUau 3 21 433 455 [dm3:3R:9794453-9794475:-] 0.5384 142 0 -9.16 -0.1014 MIMAT0005486 dme-miR-970 41704 rdx uaucggcgcacacaGAAUACu |||||| ugauuuaauauuacCUUAUGa 2 8 437 457 [dm3:3R:9794451-9794471:-] 0.5384 120 6 -7.27 -0.4176 MIMAT0005487 dme-miR-971 41704 rdx agugacauucuucauUGUGGUu |||||| gcaacaacuacaaacACACCAa 2 8 10 31 [dm3:3R:9794877-9794898:-] 0.6809 120 6 -10.21 -0.9935 MIMAT0005504 dme-miR-987 41704 rdx guaguuAGGUCUGA---UAAAUGAAAu ||:| ||| ||||||||| ccgaguUCUAAACUUUAAUUUACUUUu 2 19 1005 1031 [dm3:3R:9793877-9793903:-] 0.3462 161 7 -11.98 -0.4962 MIMAT0005520 dme-miR-1000 41704 rdx ugacgacacuguccUGUUAUa |||||| caaacacaccaacaACAAUAa 2 8 20 40 [dm3:3R:9794868-9794888:-] 0.5138 120 6 -5.67 -0.1323 MIMAT0005016 dme-miR-1003 41704 rdx gacacuuauacauuUACACUCu ||||||| augcaguggccgccAUGUGAGa 2 9 219 240 [dm3:3R:9794668-9794689:-] 0.4671 140 7 -14.24 -0.1683 MIMAT0005017 dme-miR-1004 41704 rdx gacAC-UC-CCUUCACUACACUCu || || || | ||||||| cgaUGCAGUGGCCGCCAUGUGAGa 2 20 217 240 [dm3:3R:9794668-9794691:-] 0.4671 145 7 -15.60 -0.1651 MIMAT0005027 dme-miR-1014 41704 rdx gacguUUACUUUUACUUAAaa ||| | ||||||| cgaguAAUAAUUAUGAAUUaa 3 17 470 490 [dm3:3R:9794418-9794438:-] 0.5384 136 0 -6.50 -0.2777

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rdx RAID00753597 dme-miR-305-5p miRNA MIMAT0000391 rdx mRNA 41704 Prediction 0.2381 rdx RAID01793814 dme-miR-972-3p miRNA MIMAT0005488 rdx mRNA 41704 Prediction 0.1828 rdx RAID01898816 dme-miR-991-3p miRNA MIMAT0005509 rdx mRNA 41704 Prediction 0.1828 rdx RAID01910815 dme-miR-927-5p miRNA MIMAT0005501 rdx mRNA 41704 Prediction 0.1828 rdx RAID02070373 dme-miR-33-5p miRNA MIMAT0000342 rdx mRNA 41704 Prediction 0.1828 rdx RAID02218311 dme-miR-971-3p miRNA MIMAT0005487 rdx mRNA 41704 Prediction 0.2202 rdx RAID02375511 dme-miR-1014-3p miRNA MIMAT0005027 rdx mRNA 41704 Prediction 0.1828 rdx RAID02485444 dme-miR-375-3p miRNA MIMAT0005472 rdx mRNA 41704 Prediction 0.1828 rdx RAID02637407 dme-miR-970-3p miRNA MIMAT0005486 rdx mRNA 41704 Prediction 0.2202 rdx RAID02675493 dme-miR-8-3p miRNA MIMAT0000113 rdx mRNA 41704 Prediction 0.1828 rdx RAID02706396 dme-miR-219-5p miRNA MIMAT0000335 rdx mRNA 41704 Prediction 0.1828 rdx RAID02828110 dme-miR-11-3p miRNA MIMAT0000116 rdx mRNA 41704 Prediction 0.1828 rdx RAID02904728 dme-miR-987-5p miRNA MIMAT0005504 rdx mRNA 41704 Prediction 0.2202 rdx RAID02929324 dme-miR-1001-5p miRNA MIMAT0005521 rdx mRNA 41704 Prediction 0.1828 rdx RAID03047779 dme-miR-316-5p miRNA MIMAT0000408 rdx mRNA 41704 Prediction 0.1828 rdx RAID03187819 dme-miR-1012-3p miRNA MIMAT0005025 rdx mRNA 41704 Prediction 0.1828 rdx RAID03188749 dme-miR-963-5p miRNA MIMAT0005477 rdx mRNA 41704 Prediction 0.1828 rdx RAID03203752 dme-miR-1004-3p miRNA MIMAT0005017 rdx mRNA 41704 Prediction 0.2202 rdx RAID03350821 dme-miR-1000-5p miRNA MIMAT0005520 rdx mRNA 41704 Prediction 0.2202 rdx RAID03437679 dme-miR-315-5p miRNA MIMAT0000407 rdx mRNA 41704 Prediction 0.1828 rdx RAID03609672 dme-miR-962-5p miRNA MIMAT0005476 rdx mRNA 41704 Prediction 0.2202 rdx RAID03621159 dme-miR-1003-3p miRNA MIMAT0005016 rdx mRNA 41704 Prediction 0.2202 rdx RAID03966146 dme-miR-303-5p miRNA MIMAT0000388 rdx mRNA 41704 Prediction 0.1828