DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 44118 vih cacGUUU-GCUAAAAGUU-GUGu |||| | || |||| ||| caaCAAACCAAUCAUCAAUCACc 2 19 101 123 [dm3:3L:12498349-12498371:+] 0.5336 121 0 -9.12 -0.6826 MIMAT0005481 dme-miR-966 44118 vih ggUGUGUCGGGU--GUUG-GGUGu |:|:||: || |||| |||| acAUAUAGUGCAAGCAACUCCACu 2 20 55 78 [dm3:3L:12498303-12498326:+] 0.5336 126 0 -23.05 -0.4969 MIMAT0005482 dme-miR-967 44118 vih gcGAAGAGGUCUCCAUAGAGa | || :| | ||||||| cgCGUCGUCUUA-GUAUCUCc 2 20 534 553 [dm3:3L:12498782-12498801:+] 0.5500 145 7 -15.22 -0.6125 MIMAT0005517 dme-miR-997 44118 vih acuuugaggaagcUCAAACCc ||||||| -------------AGUUUGGc 2 9 1 8 [dm3:3L:12498249-12498256:+] 0.6600 140 7 -7.11 -0.4798 MIMAT0005022 dme-miR-1009 44118 vih gacuuUAC-AUUGUUAAAAACUCu ||| | || |||||||| uacgcAUGAUUAC-UUUUUUGAGa 2 19 379 401 [dm3:3L:12498627-12498649:+] 0.5054 151 7 -11.42 -1.0824 MIMAT0012212 dme-miR-2499* 44118 vih cgUAACGCGACUGCAGAUGCGUGc ||||: :| | | ||||||: uaAUUGU-UUUA--UAUACGCAUg 2 23 366 386 [dm3:3L:12498614-12498634:+] 0.5365 133 0 -15.08 -0.2105 MIMAT0000332 dme-miR-274 44118 vih uaaugggcaaucacagccaGUGUUUu |||||| agcuugauguuauugaaacCACAAAu 2 8 628 653 [dm3:3L:12498876-12498901:+] 0.5500 120 6 -10.10 -0.1399 MIMAT0000390 dme-miR-304 44118 vih gaGUGUAAAUGUUUAACU-CUAAu ||: ||| :: | ||| |||| gcCAUUUUUUUGUACUGAUGAUUu 2 22 430 453 [dm3:3L:12498678-12498701:+] 0.5121 125 0 -7.15 -0.6442 MIMAT0000412 dme-miR-iab-4-5p 44118 vih aguccuauguaagucAUAUGCa |||||| uaguuaauuguuuuaUAUACGc 2 8 362 383 [dm3:3L:12498610-12498631:+] 0.5365 120 6 -7.32 -0.1801 MIMAT0005478 dme-miR-964 44118 vih uuCAAUUCGA--GGGGAUAAGAuu | ||| || ::::|||||| cgGAUAAUCUGGUUUUUAUUCUca 3 21 243 266 [dm3:3L:12498491-12498514:+] 0.5365 135 0 -7.81 -0.1244 MIMAT0005486 dme-miR-970 44118 vih uaucGGCGCACACAGAAUACu |||:| || ||||||| gaccCCGUGCGUUUCUUAUGu 2 18 205 225 [dm3:3L:12498453-12498473:+] 0.4566 165 7 -20.47 -0.6189 MIMAT0005504 dme-miR-987 44118 vih guAGUUAGGUCUG-AUAAAUGAAAu |: || :| :| |: ||||||| guUUUAUAUACGCAUGAUUACUUUu 2 23 371 395 [dm3:3L:12498619-12498643:+] 0.5054 153 7 -6.53 -0.8147 MIMAT0005519 dme-miR-999 44118 vih ucugugucagAAUGUCAAUUGu || :||||||: uaaggauaaaUUUUAGUUAAUu 2 13 349 370 [dm3:3L:12498597-12498618:+] 0.5365 132 0 -9.67 -0.1187 MIMAT0005027 dme-miR-1014 44118 vih gacguUUACUUUUAC-UUAAAa | ||: |||| ||||| aauguAUUGGUAAUGUAAUUUu 2 17 302 323 [dm3:3L:12498550-12498571:+] 0.5365 124 0 -10.21 -1.1170

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score vih RAID00419309 dme-miR-34-5p miRNA MIMAT0000350 vih mRNA 44118 Prediction 0.1828 vih RAID00568659 dme-miR-997-5p miRNA MIMAT0005517 vih mRNA 44118 Prediction 0.1828 vih RAID01069629 dme-miR-iab-4-5p miRNA MIMAT0000412 vih mRNA 44118 Prediction 0.1828 vih RAID01131950 dme-miR-304-5p miRNA MIMAT0000390 vih mRNA 44118 Prediction 0.1828 vih RAID01306626 dme-miR-973-5p miRNA MIMAT0005489 vih mRNA 44118 Prediction 0.1828 vih RAID02130470 dme-miR-274-5p miRNA MIMAT0000332 vih mRNA 44118 Prediction 0.1828 vih RAID02298240 dme-miR-1014-3p miRNA MIMAT0005027 vih mRNA 44118 Prediction 0.1828 vih RAID02575860 dme-miR-970-3p miRNA MIMAT0005486 vih mRNA 44118 Prediction 0.2202 vih RAID02640759 dme-miR-219-5p miRNA MIMAT0000335 vih mRNA 44118 Prediction 0.1828 vih RAID02705612 dme-miR-964-5p miRNA MIMAT0005478 vih mRNA 44118 Prediction 0.1828 vih RAID02858998 dme-miR-987-5p miRNA MIMAT0005504 vih mRNA 44118 Prediction 0.1828 vih RAID02970655 dme-miR-316-5p miRNA MIMAT0000408 vih mRNA 44118 Prediction 0.1828 vih RAID03238079 dme-miR-14-3p miRNA MIMAT0000120 vih mRNA 44118 Prediction 0.1828 vih RAID03760065 dme-miR-999-3p miRNA MIMAT0005519 vih mRNA 44118 Prediction 0.1828