DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 33981 smt3 auaguaaaguauacguugcaUUUAUGu |||||| acuuaaaacgaaaaagaaaaAAAUACa 2 8 41 67 [dm3:2L:6966961-6966987:-] 0.4632 120 6 -7.50 -0.2438 MIMAT0000363 dme-miR-288 33981 smt3 guacuUUACUUUAGCUGUACUUu || | | | ||||||| aacacAACAACAACAACAUGAAg 2 19 88 110 [dm3:2L:6966918-6966940:-] 0.4632 150 7 -9.14 -0.8103 MIMAT0005502 dme-miR-985 33981 smt3 acgggcugguaaccUUGUAAAc ||||||| gcguaaauaacaaaAACAUUUg 2 9 186 207 [dm3:2L:6966821-6966842:-] 0.4632 140 7 -9.39 -0.6107 MIMAT0011787 dme-miR-2280* 33981 smt3 agucaaucgaaccuUCAUUUAa :|||||| gcagacaagaaaauGGUAAAUa 2 9 207 228 [dm3:2L:6966800-6966821:-] 0.4632 124 6 -8.32 -0.2318 MIMAT0012196 dme-miR-2489 33981 smt3 ugacgUUUAUGUUGUAUGUUau ||: | || |||||| cgaaaAAGAAAAAAAUACAAga 3 18 49 70 [dm3:2L:6966958-6966979:-] 0.4632 137 0 -5.55 -0.2750 MIMAT0012201 dme-miR-2493 33981 smt3 ugcGGAGCGUGUUUAUGUGUGcc |||| :|||| ||||||| acuCCUCUUACAACUACACACuu 3 21 22 44 [dm3:2L:6966984-6967006:-] 0.4959 160 0 -21.86 -0.1109 MIMAT0012202 dme-miR-2494* 33981 smt3 aaggguuagaccacGUGAAUg |||||| cucuuacaacuacaCACUUAa 2 8 26 46 [dm3:2L:6966982-6967002:-] 0.4959 120 6 -9.78 -0.1562 MIMAT0000332 dme-miR-274 33981 smt3 uaaugggcaaucacagccaGUGUUUu |||||| aaaaaaauacaagaaaaacCACAAAa 2 8 57 82 [dm3:2L:6966946-6966971:-] 0.4632 120 6 -11.29 -0.1839 MIMAT0000332 dme-miR-274 33981 smt3 uaaugggcaaucacagccaGUGUUUu |||||| uaaagcauuuuauaaacuaCACAAAa 2 8 227 252 [dm3:2L:6966776-6966801:-] 0.4348 120 6 -12.21 -0.2773 MIMAT0000338 dme-miR-277 33981 smt3 acagcAUGGUCUAUCACGUAAAu |: :| ||| |||||| gaaaaUGGUAAAUAAAGCAUUUu 2 19 215 237 [dm3:2L:6966791-6966813:-] 0.4632 126 6 -7.05 -0.1482 MIMAT0000390 dme-miR-304 33981 smt3 gaGUGUAAAU-GU-UUAAC-UCUAAu ::| |||| :| || || ||||| uaUGCUUUUAGUACAACUGUAGAUUc 2 22 145 170 [dm3:2L:6966858-6966883:-] 0.4632 123 0 -8.50 -0.7435 MIMAT0000391 dme-miR-305 33981 smt3 gucuCGUGGAC-UACUUCAUGUUa | |: || | ||||||| gauuGAAUAUGCUUUUAGUACAAc 2 20 138 161 [dm3:2L:6966867-6966890:-] 0.4632 142 7 -9.23 -0.7566 MIMAT0000408 dme-miR-316 33981 smt3 gcggucAUUCGCCUUUUUCUgu ||| |||||||| cacacuUAAAACGAAAAAGAaa 3 17 38 59 [dm3:2L:6966969-6966990:-] 0.4959 136 0 -10.30 -0.2290 MIMAT0005501 dme-miR-927 33981 smt3 ccAU-UUCGCAUCCUUAAGAUUu || || :|||| ||||||| agUACAACUGUAG--AUUCUAAa 2 21 154 174 [dm3:2L:6966854-6966874:-] 0.4632 156 7 -13.20 -0.6576 MIMAT0005507 dme-miR-137 33981 smt3 gaugcacauaagagUUCGUUau |||||| aagaaaaaccacaaAAGCAAaa 3 9 67 88 [dm3:2L:6966940-6966961:-] 0.4632 120 0 -5.25 -0.1175 MIMAT0005519 dme-miR-999 33981 smt3 ucugugucagAAUG--UCAAUUgu |||| |||||| --------gaUUACUUAGUUAAgu 3 13 1 16 [dm3:2L:6967012-6967027:-] 0.5285 127 0 -6.05 -0.1346

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score smt3 RAID00070807 dme-miR-137-3p miRNA MIMAT0005507 smt3 mRNA 33981 Prediction 0.1828 smt3 RAID00861001 dme-miR-274-5p miRNA MIMAT0000332 smt3 mRNA 33981 Prediction 0.1828 smt3 RAID00906483 dme-miR-927-5p miRNA MIMAT0005501 smt3 mRNA 33981 Prediction 0.2202 smt3 RAID00989217 dme-miR-305-5p miRNA MIMAT0000391 smt3 mRNA 33981 Prediction 0.2202 smt3 RAID01814920 dme-miR-304-5p miRNA MIMAT0000390 smt3 mRNA 33981 Prediction 0.1828 smt3 RAID02255755 dme-miR-316-5p miRNA MIMAT0000408 smt3 mRNA 33981 Prediction 0.1828 smt3 RAID02359110 dme-miR-964-5p miRNA MIMAT0005478 smt3 mRNA 33981 Prediction 0.1828 smt3 RAID02367163 dme-miR-277-3p miRNA MIMAT0000338 smt3 mRNA 33981 Prediction 0.1828 smt3 RAID02616996 dme-miR-999-3p miRNA MIMAT0005519 smt3 mRNA 33981 Prediction 0.1828 smt3 RAID03419515 dme-miR-985-3p miRNA MIMAT0005502 smt3 mRNA 33981 Prediction 0.1828 smt3 RAID03729154 dme-miR-976-3p miRNA MIMAT0005492 smt3 mRNA 33981 Prediction 0.1828