DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37190 abba auaguaaAGUAUACGUUGCAUUUAUGu ||| | | :|| |||||| -------UCAGAAUCCGCGAAAAUACc 2 21 1 20 [dm3:2R:14896279-14896298:+] 0.5962 132 6 -7.84 -0.1413 MIMAT0011786 dme-miR-2280 37190 abba uauaaaauaacgguUCGAUUcu |||||| aauggaggaaaagcAGCUAAaa 3 9 154 175 [dm3:2R:14896432-14896453:+] 0.4721 120 0 -5.10 -0.1116 MIMAT0012204 dme-miR-2495 37190 abba ucAGUCGGGUUAA--CUUCACGGu | | ::::|| |||||||| auUAAUAUUGGUUACGAAGUGCCa 2 21 82 105 [dm3:2R:14896360-14896383:+] 0.5350 147 7 -16.46 -0.7716 MIMAT0012204 dme-miR-2495 37190 abba ucAGUCGGGUUAA--CUUCACGGu | | ::::|| |||||||| auUAAUAUUGGUUACGAAGUGCCa 2 21 82 105 [dm3:2R:14896360-14896383:+] 0.5350 147 7 -16.46 -0.7971 MIMAT0012213 dme-miR-2499 37190 abba augccugcacuuacagUAGGCGUa ||||||: -----------ucagaAUCCGCGa 2 9 1 13 [dm3:2R:14896279-14896291:+] 0.5962 124 0 -12.59 -0.2790 MIMAT0012213 dme-miR-2499 37190 abba augccugcacuuacagUAGGCGUa ||||||: -----------ucagaAUCCGCGa 2 9 1 13 [dm3:2R:14896279-14896291:+] 0.5962 124 0 -12.59 -0.1139 MIMAT0012215 dme-miR-2500 37190 abba gacuccaggugugugUUUUAGg |||||| cagcuaaaaaaaaaaAAAAUCg 2 8 167 188 [dm3:2R:14896445-14896466:+] 0.5662 120 6 -3.63 -0.1959 MIMAT0000114 dme-miR-9a 37190 abba agUAU-GUCGAU-CUAU-UGGUUUCu ||| ::|:|| || : :|||||| uaAUAUUGGUUACGAAGUGCCAAAGc 2 22 84 109 [dm3:2R:14896362-14896387:+] 0.5350 138 6 -12.10 -0.1147 MIMAT0000362 dme-miR-263b 37190 abba cacuuaAGAGGGUCACGGUUc |: | |||||||| uauuggUUACGAAGUGCCAAa 2 16 87 107 [dm3:2R:14896365-14896385:+] 0.5350 147 7 -12.75 -1.1378 MIMAT0000362 dme-miR-263b 37190 abba cacuuaAGAGGGUCACGGUUc |: | |||||||| uauuggUUACGAAGUGCCAAa 2 16 87 107 [dm3:2R:14896365-14896385:+] 0.5350 147 7 -12.75 -1.1176 MIMAT0000392 dme-miR-9c 37190 abba agAU-GUCGAU-CUU-AUGGUUUCu || ::|:|| ||| |:|||||| aaUAUUGGUUACGAAGUGCCAAAGc 2 21 85 109 [dm3:2R:14896363-14896387:+] 0.5350 145 6 -15.38 -0.1147 MIMAT0000395 dme-miR-9b 37190 abba guAU-GUCGAU-UUUAGUGGUUUCu || ::|:|| :|| ::|||||| aaUAUUGGUUACGAAGUGCCAAAGc 2 22 85 109 [dm3:2R:14896363-14896387:+] 0.5350 143 6 -12.38 -0.1125 MIMAT0000402 dme-miR-310 37190 abba uuuCCGGCCCUUCACAC-GUUAu | |: | || |||| |||| uacGCCUAGAAAUUGUGUCAAUu 2 20 128 150 [dm3:2R:14896406-14896428:+] 0.6023 123 0 -11.31 -0.7724 MIMAT0000402 dme-miR-310 37190 abba uuuCCGGCCCUUCACAC-GUUAu | |: | || |||| |||| uacGCCUAGAAAUUGUGUCAAUu 2 20 128 150 [dm3:2R:14896406-14896428:+] 0.6023 123 0 -11.31 -0.7271 MIMAT0000407 dme-miR-315 37190 abba cgaaagacucgUUGUUAGUUUu || ||||:|| cuaaaaaaaaaAAAAAUCGAAa 2 12 170 191 [dm3:2R:14896448-14896469:+] 0.5662 131 0 -6.90 -0.3110 MIMAT0005496 dme-miR-980 37190 abba auucgggaaguguucCGUCGAu |||||| agcaauggaggaaaaGCAGCUa 2 8 151 172 [dm3:2R:14896429-14896450:+] 0.4721 120 6 -12.94 -0.1887 MIMAT0005505 dme-miR-988 37190 abba cgcacuccaaacguUGUUCCcc |||||| gcgaaaauaccgauACAAGGaa 3 9 10 31 [dm3:2R:14896288-14896309:+] 0.3673 120 0 -9.75 -0.2657 MIMAT0005505 dme-miR-988 37190 abba cgcacuccaaacguUGUUCCcc |||||| gcgaaaauaccgauACAAGGaa 3 9 10 31 [dm3:2R:14896288-14896309:+] 0.3673 120 0 -9.75 -0.1290 MIMAT0005507 dme-miR-137 37190 abba gaugcacaUAAGAGUUCGUUAu :| | ||||||| guuacgaaGUGCCAAAGCAAUu 2 15 92 113 [dm3:2R:14896370-14896391:+] 0.5350 142 7 -13.86 -0.8622 MIMAT0005507 dme-miR-137 37190 abba gaugcacaUAAGAGUUCGUUAu :| | ||||||| guuacgaaGUGCCAAAGCAAUu 2 15 92 113 [dm3:2R:14896370-14896391:+] 0.5350 142 7 -13.86 -0.8109

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score tn RAID00522502 dme-miR-977-3p miRNA MIMAT0005493 tn mRNA 37190 Prediction 0.1828 tn RAID01186893 dme-miR-988-3p miRNA MIMAT0005505 tn mRNA 37190 Prediction 0.1828 tn RAID01307235 dme-miR-971-3p miRNA MIMAT0005487 tn mRNA 37190 Prediction 0.1828 tn RAID01668422 dme-miR-9b-5p miRNA MIMAT0000395 tn mRNA 37190 Prediction 0.1828 tn RAID01679943 dme-miR-137-3p miRNA MIMAT0005507 tn mRNA 37190 Prediction 0.2202 tn RAID02263767 dme-miR-315-5p miRNA MIMAT0000407 tn mRNA 37190 Prediction 0.1828 tn RAID02369325 dme-miR-980-3p miRNA MIMAT0005496 tn mRNA 37190 Prediction 0.2202 tn RAID02737512 dme-miR-310-3p miRNA MIMAT0000402 tn mRNA 37190 Prediction 0.1828 tn RAID02774957 dme-miR-9c-5p miRNA MIMAT0000392 tn mRNA 37190 Prediction 0.1828 tn RAID02861613 dme-miR-263b-5p miRNA MIMAT0000362 tn mRNA 37190 Prediction 0.2202 tn RAID03317469 dme-miR-967-5p miRNA MIMAT0005482 tn mRNA 37190 Prediction 0.1828 tn RAID04015572 dme-miR-9a-5p miRNA MIMAT0000114 tn mRNA 37190 Prediction 0.1828