DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 31746 Traf6 auAGUAAAGUAUACGUUGCAUUUAUGu ||| | || || | |||||||||| agUCAAUGCAGAU-C-ACGUAAAUACa 2 26 616 640 [dm3:X:8049227-8049251:-] 0.4095 173 7 -20.94 -0.3600 MIMAT0005473 dme-miR-959 31746 Traf6 aaguAUUAUGGGGGCUA-CUGUu | :| |||: ||| |||| gaauUCGUUCCCUAGAUAGACAa 2 19 210 232 [dm3:X:8049635-8049657:-] 0.5001 122 0 -18.95 -0.6750 MIMAT0005517 dme-miR-997 31746 Traf6 acuuugaggaagcuCAAACCc |||||| ugaucaucaauuucGUUUGGa 2 8 998 1018 [dm3:X:8048849-8048869:-] 0.4648 120 6 -10.00 -0.1653 MIMAT0011784 dme-miR-2279* 31746 Traf6 uuaaaGUGUGUGUCUAUAAAuu |||::|:| |||||| acacaCACGUAUAUAUAUUUua 3 18 406 427 [dm3:X:8049440-8049461:-] 0.5469 145 0 -15.16 -0.1263 MIMAT0011786 dme-miR-2280 31746 Traf6 uauaaaAUAACGGUUCGAUUCu |:|| : :||||||| acuacaUGUU-UAGAGCUAAGa 2 17 1094 1114 [dm3:X:8048753-8048773:-] 0.4648 146 7 -12.74 -0.4574 MIMAT0011791 dme-miR-2283 31746 Traf6 uaacaGCAUAAGUACUAUAAAAg ||||| || ||||||| acacaCGUAU--AU-AUAUUUUa 2 19 408 427 [dm3:X:8049440-8049459:-] 0.5469 153 7 -8.29 -1.1771 MIMAT0011791 dme-miR-2283 31746 Traf6 uaacagcauaagUACUAUAAAAg || ||||||| gaaggggcgggaAU-AUAUUUUu 2 12 947 968 [dm3:X:8048899-8048920:-] 0.3711 141 7 -5.94 -0.5207 MIMAT0012196 dme-miR-2489 31746 Traf6 ugACGUUUAUGUUGUAUG-UUAu || | || ||| |||| ||| gaUG-AUAUUCAA-AUACUAAUc 2 21 504 524 [dm3:X:8049343-8049363:-] 0.4095 120 0 -5.99 -0.7363 MIMAT0012197 dme-miR-2490 31746 Traf6 aacgUUGGACG--AAAUAGCGAAGu | :|| | ||||||||||| uuuaAUUCUUCAGUUUAUCGCUUCg 2 20 855 879 [dm3:X:8048988-8049012:-] 0.4131 162 7 -17.88 -0.7153 MIMAT0012199 dme-miR-2492 31746 Traf6 aaacuUUCGAGAGC---UGUUUUGUa || ||:| | ||||||| uaauuAAUCUUUAGUUUUCAAAACAu 2 19 713 738 [dm3:X:8049129-8049154:-] 0.4117 145 7 -10.77 -0.8626 MIMAT0012199 dme-miR-2492 31746 Traf6 aaacuuucgagagcugUUUUGUa |||||| uggaaaaaaaaaaaaaAAAACAa 2 8 1015 1037 [dm3:X:8048830-8048852:-] 0.4648 120 6 -4.73 -0.1084 MIMAT0012201 dme-miR-2493 31746 Traf6 ugcggagcgUGUUUAUGUGUGCc :| :| ||||||| uacccgauaGCUGACACACACGu 2 15 393 415 [dm3:X:8049452-8049474:-] 0.4799 146 7 -17.70 -0.5669 MIMAT0012216 dme-miR-2501 31746 Traf6 aaucggguccgugaggUUUGAAUg ||||||| uaggucuauaauuggaAAACUUAg 2 9 641 664 [dm3:X:8049203-8049226:-] 0.4106 140 7 -11.38 -0.2762 MIMAT0000112 dme-miR-7 31746 Traf6 ugUUGUUUUAGUGAUCAGAAGGu ::|:: | |: | ||||||| gcGGCGGCACCGAU-GUCUUCCg 2 22 28 49 [dm3:X:8049818-8049839:-] 0.4935 147 7 -21.34 -0.1471 MIMAT0000338 dme-miR-277 31746 Traf6 acagcAUGGUCUA-UCACGUAAAu |||| || | ||||||| cgugaUACCUUAUCAAUGCAUUUu 2 19 682 705 [dm3:X:8049162-8049185:-] 0.4117 157 7 -12.23 -0.6175 MIMAT0000412 dme-miR-iab-4-5p 31746 Traf6 aguccUAUGUAAGUCAUAUGCa |||:|| :|||||||| ccuauAUAUAUAUAGUAUACGa 2 18 434 455 [dm3:X:8049412-8049433:-] 0.4782 169 7 -17.15 -1.0545 MIMAT0005476 dme-miR-962 31746 Traf6 cugucguaguuaaagagAUGGAAUa ||||||| cuuggguuuacccgugaUACCUUAu 2 9 670 694 [dm3:X:8049173-8049197:-] 0.4117 140 7 -14.82 -0.3220 MIMAT0005497 dme-miR-981 31746 Traf6 acguccAAAGCAGCUGUUGCUu |||:| ||||||| uaccuuUUUUGAAAACAACGAa 2 17 928 949 [dm3:X:8048918-8048939:-] 0.3711 152 7 -13.12 -0.5860 MIMAT0005507 dme-miR-137 31746 Traf6 gaugcacauaagAGUUCGUUAu |:||||||| gcaagcaucacaUUAAGCAAUc 2 11 480 501 [dm3:X:8049366-8049387:-] 0.4095 146 7 -8.42 -0.6094 MIMAT0005520 dme-miR-1000 31746 Traf6 ugacgacaCUGUCCUGUUAUa ||:| ||||||| guucccuaGAUA-GACAAUAa 2 14 216 235 [dm3:X:8049632-8049651:-] 0.5001 147 7 -10.69 -0.9032

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Traf6 RAID00388569 dme-miR-137-3p miRNA MIMAT0005507 Traf6 mRNA 31746 Prediction 0.2202 Traf6 RAID00458776 dme-miR-1002-5p miRNA MIMAT0005483 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID00650511 dme-miR-1000-5p miRNA MIMAT0005520 Traf6 mRNA 31746 Prediction 0.2202 Traf6 RAID01052793 dme-miR-997-5p miRNA MIMAT0005517 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID01080804 dme-mir-iab-4 miRNA MI0000432 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID01146854 dme-miR-310-3p miRNA MIMAT0000402 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID01560733 dme-miR-312-3p miRNA MIMAT0000404 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID01687964 dme-miR-277-3p miRNA MIMAT0000338 Traf6 mRNA 31746 Prediction 0.2202 Traf6 RAID01851879 dme-miR-981-3p miRNA MIMAT0005497 Traf6 mRNA 31746 Prediction 0.2202 Traf6 RAID02164755 dme-miR-962-5p miRNA MIMAT0005476 Traf6 mRNA 31746 Prediction 0.2202 Traf6 RAID02564014 dme-miR-1011-3p miRNA MIMAT0005024 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID02577691 dme-miR-92a-3p miRNA MIMAT0000334 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID02883523 dme-miR-1001-5p miRNA MIMAT0005521 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID02893928 dme-miR-252-5p miRNA MIMAT0005516 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID02932524 dme-miR-989-3p miRNA MIMAT0005506 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID03051172 dme-miR-375-3p miRNA MIMAT0005472 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID03311286 dme-miR-iab-4-5p miRNA MIMAT0000412 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID03386759 dme-miR-311-3p miRNA MIMAT0000403 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID03400735 dme-miR-7-5p miRNA MIMAT0000112 Traf6 mRNA 31746 Prediction 0.2202 Traf6 RAID03491009 dme-miR-283-5p miRNA MIMAT0000347 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID03769493 dme-miR-33-5p miRNA MIMAT0000342 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID03791457 dme-miR-313-3p miRNA MIMAT0000405 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID03800085 dme-miR-190-5p miRNA MIMAT0005467 Traf6 mRNA 31746 Prediction 0.1828 Traf6 RAID03890172 dme-miR-92b-3p miRNA MIMAT0000358 Traf6 mRNA 31746 Prediction 0.1828